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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1308#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence
[GTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATAGGCTCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGATATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAGGGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTGATGATTCTGGAGAAATTAAGAGCTCATATCGGAAAATACATCTGTTTGATGT]
[+] EMBL CB668655 [GTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATAGGCTCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGATATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAGGGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTGATGATTCTGGAGAAATTAAGAGCTCATATCGGAAAATACATCTGTTTGATGT]
consensusID : consensus_1308#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[CGAATTCGGCACGAGGCTGACATGCGTGCCTTTAAAAGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACAGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATACGCTCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGATATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAGGGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTG]
[+] EMBL CB668785 [CGAATTCGGCACGAGGCTGACATGCGTGCCTTTAAAAGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGATTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACGGCGCGGCTGCTCCGGTGAGCCGCGCCACAGAATCGGGAGCTCCAAGTGGGCCATTTTTGGTAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATACGCTCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGATATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAGGGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1308#0 -------------------------GTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGC 35
consensus_1308#1 CGAATTCGGCACGAGGCTGACATGCGTGCCTTTAAAAGGGTTCTGAAACCTGGGATGCGC 60
**** * * ***********************
consensus_1308#0 AAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCT 95
consensus_1308#1 AAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCCGCACCGCTGGCCGACCCTGATCTTCT 120
************************************************************
consensus_1308#0 GTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGA 155
consensus_1308#1 GTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGA 180
************************************************************
consensus_1308#0 GCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCG 215
consensus_1308#1 GCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCG 240
************************************************************
consensus_1308#0 TTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCT 275
consensus_1308#1 TTCGTCTGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCT 300
************************************************************
consensus_1308#0 CCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGA 335
consensus_1308#1 CCGAAGTTTCCCTCAGGATAGCTGGAGCCCATTACGAGTTCTATCGGGTAAAGCCAATGA 360
************************************************************
consensus_1308#0 TTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACG 395
consensus_1308#1 TTAGAGGCATCGGGGGCGCAACGCCCTCGACCTATTCTCAAACTTTAAATAGGTAGGACG 420
************************************************************
consensus_1308#0 GCGCGGCTGCTCCGGTGAGCCGCGCCACGGAATCGGGAGCTCCAAGTGGGCCATTTTTGG 455
consensus_1308#1 GCGCGGCTGCTCCGGTGAGCCGCGCCACAGAATCGGGAGCTCCAAGTGGGCCATTTTTGG 480
**************************** *******************************
consensus_1308#0 TAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATAGGC 515
consensus_1308#1 TAAGCAGCATCCTCTGGTGTCAAATTTCTTTGCTTTCCTGAGGTATTCTCATTCATACGC 540
********************************************************* **
consensus_1308#0 TCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGA 575
consensus_1308#1 TCCAAGGATGGCGAGTCTATTAAGATTGCTGAACCATTAGATGGCCCAATAATGCAGAGA 600
************************************************************
consensus_1308#0 TATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAG 635
consensus_1308#1 TATTGCTCACTTGCAAAGGAATCAAGTATGTGGTTGTCTCTTGGAGGGTTTCAAGAAAAG 660
************************************************************
consensus_1308#0 GGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTGATGATTCTGGAGAAATT 695
consensus_1308#1 GGTCCTGATGATTCACACCAGTACAATACTCATGTACTAATTG----------------- 703
*******************************************
consensus_1308#0 AAGAGCTCATATCGGAAAATACATCTGTTTGATGT 730
consensus_1308#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||