cluster # 13080

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13080 cluster # 13080 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13080#0 length = 1920 sequences # 10

consensus_13080#1 length = 997 sequences # 1
consensus_13080#2 length = 374 sequences # 1

consensusID : consensus_13080#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1920
fasta sequence

                              [AAACCCTAGCCCCTCCCCTCTTCTCCTCTTCACAACCTCCTCCCCCTCGCGCCACCGCCCAACCATCTCCCCTCTCGCCGGAGTACTCGCCGCCGCCTTGCTCCAACCACCGAAGCTCCGAGGATGATCTCCGCGATATCGTGGGTGCCCAGGGGCGCCGCCAAGCTCGTCCCCGTCGAGGCGGA-CGCCCCACGCAGGAGGAGATCGA-CGAGGCCATCAAGGCCATCGCCCAGCACACGGAAGGTGGGAGCGACGCCGACGAGGACGCCGACGACGGCGAGGAGAATGGCAACATGGAGGTCGATGCCGCCGCCGATGAGGAGGAGGAGGAGGTAGACGAGGTCGCGCAGGCAAAGGCCGCGGCCAAGGCGCTCGCTAAGGGCGCTGTCGATGACGTCGCCGACGAGCTCAAGGAGCTCAACATGGACAACTACGACGAGGAGGAGGAAGGTCTCGAGATTTTCAGCTCCGGCCAAGGGGACTTGTACTATGCTAGCAATGACCTGGACCCCTATCTCAAGAACAATGATGAGGATGACGATGATGAAGAGATTGAAGACATGACTATCAAACCTACTGATTTGATGGTAGTTTGTGCATATAATGAGGATGATGTCAATTCGCTGCAGGTAAATTTACTTGAAGAAACAGAAGACGGCGATCTAAATATGTTTGTGCACCATGAGGTGCCTCTAGCTGATTTTCCGTTGTGCACAGCATGGATGGATTTTAACCTTAAGGGTGGCGACAAAGGGAATTTCGTAGCTGTTGGCACCATGGATCCTGCAATTGAAATTTGGGACCTGGATATAGTCGATGAAGTTCAACCTCACATGGTGCTAGGAGGACATTCAAAAAAGAAGAAAAAAGTAAAGGGCAAAAAGGCAAAAAAGTACAAGAAGGGAAGTCATAGAAGTTCTGTGCTTGGTCTTGCATGGAACAAGGAGGTGAGGAATGTTCTAGCTAGTGCAAGTGCAGACAAAACTGTTAAGATTTGGGATGTATCTGTTGGCAAATGTGCAGTCACATTGGAACATCATGATGACAAGGTTCAATCTGTTGCTTGGAGCCGACAATCGCCTGAAGTTCTTCTAAGCGGATCGTTCGATAAATCAGTTGCCATGAATGACATGAAAGATGGTGGACAGAGTTGTAATAAATGGTCTGTTGAAGCAGATGTAGAAAGCTTAGCTTGGGATCCGCATAATGAGCACTCCTTCATGGTTAGTCTTGAAAATGGGATGGTTCAAGCATTTGATAAGCGGACAGCCTCATCAAATTCAAATTCTGGTCGTCCCACGTTTACTCTGCACGCACACGAGAAGGCTGTATCTTCCATCTCCTTCAGTCCATCTACCCCAAATTTTCTTGCGACAGGCTCGACTGACAAAATGGTGAAGCTATGGGATTTATCAAACAACCAACCATCGTGCATCGCCTCTCTGAATCCAAAACTCGGAGCTATTTTCTCGGTATCATTTTCGAATGACAGTCCCTTCTTGTTGGCCAGCGGAGGATCAAAAGGCAAATTAAAAGTCTGGAACACACTAACGGAACCGGCTGTAGCTAATAAATTCGGGAAATAGATCCGTAGGAAATTCGACAAGCTTTCCGAGGACCGATACAAGTGATGCTGGAAACATAATAGCAGTCAACATTGCTGGCTCAAGCGGTTTCTGGCTATACATTGCTACGCACATGAGGATAGATTTCTAGTTGTGATGTAAGCTTTTCGTTTTGTCCATGTTATCAAGTCCAATTTTGTTGAACGAGTGGAATGCAAACAATCGATTCATGTACCTTTTGGCGCTTGTGCAACAGAAAGTGATGAAAGGGTTTTGCAGTGGATATCTCTTATCGGNNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL C74237               [AAACCCTAGCCCCTCCCCTCTTCTCCTCTTCACAACCTCCTCCCCCTCGCGCCACCGCCCAACCATCTCCCCTCTCGCCGGAGTACTCGCCGCCGCCTTGCTCCAACCACCGAAGCTCCGAGGATGATCTCCGCGATATCGTGGGTGCCCAGGGGCGCCGCCAAGCTCGTCCCCGTCGAGGCGGA CGCCCCACGCAGGAGGAGATCGA CGAGGCCATCAAGGCCATCGCCCAGCACACGGAAGGTGGGAGCGACGCNGACGAGGACGCCGACGACGGGAAGGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK100821             [    CCTAGCCCCTCCCCTCTTCTCCTCTTCACAACCTCCTCCCCCTCGCGCCACCGCCCAACCATCTCCCCTCTCGCCGGAGTACTCGCCGCCGCCTTGCTCCAACCACCGAAGCTCCGAGGATGATCTCCGCGATATCGTGGGTGCCCAGGGGCGCCGCCAAGCTCGTCCCCGTCGAGGCGGAGCCGCCCACGCAGGAGGAGATCGA CGAGGCCATCAAGGCCATCGCCCAGCACACGGAAGGTGGGAGCGACGCCGACGAGGACGCCGACGACGGCGAGGAGAATGGCAACATGGAGGTCGATGCCGCCGCCGATGAGGAGGAGGAGGAGGTAGACGAGGTCGCGCAGGCAAAGGCCGCGGCCAAGGCGCTCGCTAAGGGCGCTGTCGATGACGTCGCCGACGAGCTCAAGGAGCTCAACATGGACAACTACGACGAGGAGGAGGAAGGTCTCGAGATTTTCAGCTCCGGCCAAGGGGACTTGTACTATGCTAGCAATGACCTGGACCCCTATCTCAAGAACAATGATGAGGATGACGATGATGAAGAGATTGAAGACATGACTATCAAACCTACTGATTTGATGGTAGTTTGTGCATATAATGAGGATGATGTCAATTCGCTGCAGGTAAATTTACTTGAAGAAACAGAAGACGGCGATCTAAATATGTTTGTGCACCATGAGGTGCCTCTAGCTGATTTTCCGTTGTGCACAGCATGGATGGATTTTAACCTTAAGGGTGGCGACAAAGGGAATTTCGTAGCTGTTGGCACCATGGATCCTGCAATTGAAATTTGGGACCTGGATATAGTCGATGAAGTTCAACCTCACATGGTGCTAGGAGGACATTCAAAAAAGAAGAAAAAAGTAAAGGGCAAAAAGGCAAAAAAGTACAAGAAGGGAAGTCATAGAAGTTCTGTGCTTGGTCTTGCATGGAACAAGGAGGTGAGGAATGTTCTAGCTAGTGCAAGTGCAGACAAAACTGTTAAGATTTGGGATGTATCTGTTGGCAAATGTGCAGTCACATTGGAACATCATGATGACAAGGTTCAATCTGTTGCTTGGAGCCGACAATCGCCTGAAGTTCTTCTAAGCGGATCGTTCGATAAATCAGTTGCCATGAATGACATGAAAGATGGTGGACAGAGTTGTAATAAATGGTCTGTTGAAGCAGATGTAGAAAGCTTAGCTTGGGATCCGCATAATGAGCACTCCTTCATGGTTAGTCTTGAAAATGGGATGGTTCAAGCATTTGATAAGCGGACAGCCTCATCAAATTCAAATTCTGGTCGTCCCACGTTTACTCTGCACGCACACGAGAAGGCTGTATCTTCCATCTCCTTCAGTCCATCTACCCCAAATTTTCTTGCGACAGGCTCGACTGACAAAATGGTGAAGCTATGGGATTTATCAAACAACCAACCATCGTGCATCGCCTCTCTGAATCCAAAACTCGGAGCTATTTTCTCGGTATCATTTTCGAATGACAGTCCCTTCTTGTTGGCCAGCGGAGGATCAAAAGGCAAATTAAAAGTCTGGAACACACTAACGGAACCGGCTGTAGCTAATAAATTCGGGAAATAGATCCGTAGGAAATTCGACAAGCTTTCCGAGGACCGATACAAGTGATGCTGGAAACATAATAGCAGTCAACATTGCTGGCTCAAGCGGTTTCTGGCTATACATTGCTACGCACATGAGGATAGATTTCTAGTTGTGATGTAAGCTTTTCGTTTTGTCCATGTTATCAAGTCCAATTTTGTTGAACGAGTGGAATGCAAACAATCGATTCATGTACCTTTTGGCGCTTGTGCAACAGAAAGTGATGAAAGGGTTTTGCAGTGGATA                                                                      ]
[+] EMBL AU166024             [                                                                                                                                                                                             CCCACGCAGAAGGAGATCGACCGAGGCCATCAAGGCCATCGCCCAGCACACGNAAGGTGGGAGCGACGCCGACGAGGACGCCGACGACGGCGAGGAGAATGGCAACATGGAGGTCGATGCCGCCGCCGATGAGGAGGAGGAGGAGGTAGACGAGGTCGCGCAGGCAAAGGCCGCGGCCAAGGCGCTCGCTAAGGGCGCTGTCGATGACGTCGCCGACGAGCTCAAGGAGCTCAACATGGACAACTACGACGAGGAGGAGGAAGGTCTCGAGATTTTCAGCTCCGGCCAAGGGGACTTGTACTATGCTAGCAATGACCTGGACCCCTATCTCAAGAACAATGATGAGGATGACGATGATGAAGAGATTGAAGACATGACTATCAAACCTACTGATTTGATGGTAGTTTGTGCATATAATGAGGATGATGTCAATTCGCTGCAGGTAAATTTACTTGAAGAAACAGAAGACGGCGATCTAAATATGTTTGTGCACCATGAGGTGCCTCTAGCTGATTTTCCGTTGTGCACAGCATGGATGGATTTTAACCTTAAGGGTGGCGACAAAGGGAATTTCGTAGCTGTTGGCACCATGGATCCTGCAATTGAAATTTGGGACCTGGATATAGTCGATGAAGTTCAACCTCACATGGTGCTAGGAGGACATTCAAAAAAaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF324296             [                                                                                                                                                                                                                                                                                                                                          GGAGGTAGACGAGGTCGCGCAGGCAAAGGCCGCGGCCAAGGCGCTCGCTAAGGGCGCTGTCGATGACGTCGCCGACGAGCTCAAGGAGCTCAACATGGACAACTACGACGAGGAGGAGGAAGGTCTCGAGATTTTCAGCTCCGGCCAAGGGGACTTGTACTATGCTAGCAATGACCTGGACCCCTATCTCAAGAACAATGATGAGGATGACGATGATGAAGAGATTGAAGACATGACTATCAAACCTACTGATTTGATGGTAGTTTGTGCATATAATGAGGATGATGTCAATTCGCTGCAGGTAAATTTACTTGAAGAAACAGAAGACGGCGATCTAAATATGTTTGTGCACCATGAGGTGCCTCTAGCTGATTTTCCGTTGTGCACAGCATGGATGGATTTTAACCTTAAGGGTGGCGACAAAGGGAATTTCGTAGCTGTTGGCACCATGGATCCTGCAATTGAAATTTGGGACCTGGATATAGTCGATGAAGTTCAACCTCACATGGTGCTAGGAGGACATTCAAAAAAGAAGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF297608             [                                                                                                                                                                                                                                                                                                                                                            GCAGGCAAAGGCCGCGGCCAAGGCGCTCGCTAAGGGCGCTGTCGATGACGTCGCCGACGAGCTCAAGGAGCTCAACATGGACAACTACGACGAGGGGGAGGAAGGTCTCGAGATTTTCAGCTCCGGCCAAGGGGACTTGTACTATGCTAGCAATGACCTGGACCCCTATCTCAAGAACAATGATGAGGATGACGATGATGAAGAGATTGAAGACATGACTATCAAACCTACTGATTTGATGGTAGTTTGTGCATATAATGAGGATGATGTCAATTCGCTGCAGGTAAATTTACTTGAAGAAACAGAAGACGGCGATCTAAATATGTTTGTGCACCATGAGGTGCCTCTAGCTGATTTTCCGTTGTGCACAGCATGGATGGATTTTAACCTTAAGGGTGGCGACAAAGGGAATTTCGTAGCTGTTGGCACCATGGATCCTGCAATTGAAATTTGGGACCTGGATATAGTCGATGAAGTTCAACCTCACATGGTGCTAGGAGGACATTCAAAAAAGAAGAAAAAAGTAAAGGGCAAAAAGGCAAAAAAGTACAAGAAGGGAAGTCATAGAAGTTCTGTGCTTGGTCTTGCATGGAACAAGGAGGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL C26588               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GACGATGATGAAGAGATTGAAGACATGACTATCAAACCTACTGATTTGATGGTAGTTTGTGCATATAATGAGGATGATGTCAATTCGCTGCAGGTAAATTTACTTGAAGAAACAGAAGACGGCGATCTAAATATGTTTGTGCACCATGAGGT CCTCTAGCTGATTTTCCGTTGTGCACAGCATGGATGGATTTTAACCTTAAGGGTGGCGACAAAGGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CA763427             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   agaggacgaGACAAGGGGAATTTTGTAGCTGTTGGCACCATGGATCCTGCAATTGAAATTTGGGACCTGGATATAGTCGATGAAGTTCAACCTCACATGGTGCTAGGAGGACATTCAAAAAAAAAaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK112027             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGGTTCAATCTGTTGCTTGGAGCCGACAATCGCCTGAAGTTCTTCTAAGCGGATCGTTCGATAAATCAGTTGCCATGAATGACATGAAAGATGGTGGACAGAGTTGTAATAAATGGTCTGTTGAAGCAGATGTAGAAAGCTTAGCTTGGGATCCGCATAATGAGCACTCCTTCATGGTTAGTCTTGAAAATGGGATGGTTCAAGCATTTGATAAGCGGACAGCCTCATCAAATTCAAATTCTGGGCGTCCCACGTTTACTCTGCACGCACACGAGAAGGCTGTATCTTCCATCTCCTTCAGTCCATCTACCCCAAATTTTCTTGCGACAGGCTCGACTGACAAAATGGTGAAGCTATGGGATTTATCAAACAACCAACCATCGTGCATCGCCTCTCTGAATCCAAAACTCGGAGCTATTTTCTCGGTATCATTTTCGAATGACAGTCCCTTCTTGTTGGCCAGCGGAGGATCAAAAGGCAAATTAAAAGTCTGGAACACACTAACGGAACCGGCTGTAGCTAATAAATTCGGGAAATAGATCCGTAGGAAATTCGACAAGCTTTCCGAGGACCGATACAAGTGATGCTGGAAACATAATAGCAGTCAACATTGCTGGCTCAAGCGGTTTCTGGCTATACATTGCTACGCACATGAGGATAGATTTCTAGTTGTGATGTAAGCTTTTCGTTTTGTCCATGTTATCAAGTCCAATTTTGTTGAACGAGTGGAATGCAAACAATCGATTCATGTACCTTTTGGCGCTTGTGCAACAGAAAGTGATGAAAGGGT                                                                                   ]
[+] EMBL BE040397             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAAGGCTGTATCTTCCATCTCCTTCAGTCCATCTACCCCAAATTTTCTTGCGACAGGCTCGACTGACAAAATGGTGAAGCTATGGGATTTATCAAACAACCAGCCATCATGCATCGCCTCTCTGAATCCAAAACTCGGAGCTATTTTCTCGGTATCATTTTCGAATGACAGTCCCTTCTTGTTGGCCAGCGGAGGATCAAAAGGCAAATTAAAAGTCTGGAACACACTAACGGAACCGGCTGTAGCTAATAAATTCGGGAAATAGATCTGTAGGAAATTCGACAAGCTTTCCGAGGACCGATACAAGTGATGCTGGAAACATAATAGCAGTCAACATTGCTGGCTCAAGCGGTTTCTGGCTATACATTGCTACGCACATGAGGATAGATTTCTAGTTGTGATGTAAGCTTTTCGTTTTGTCCATGTTATCAAGTCCAATTTTGTTGAACGAGTGGAATGCAAACAATCGATTCATGTACCTTTTGGCGCTTGTGCAACAGANAGTGATGAAAGGGTTTTGCAGTGGATATCTCTTATCGGNNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[-] EMBL CF297609             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTGAAGCTATGGGATTTATCAAACAACCAACCATCGTGCATCGCCTCTGTGAATCCAAAACTCGGAGCTATTTTCTCGGTATCATTTTCGAATGACAGTCCCTTCTTGTTGGCCAGCGGAGGATCAAAAGGCAAATTAAAAGTTTGGAACACACTAACGGAACCGGCTGTAGCTAATAAATTCGGGAAATAGATCCGTAGGAAATTCGACAAGCTTTCCGAGGACCGATACAAGTGATGCTGGAAACATAATAGCAGTCAACATTGCTGGCTCAAGCGGTTTCTGGCTATACATTGCTACGCACATGAGGATAGATTTCTAGTTGTGATGTAAGCTTTTCGTTTTGTCCATGTTATCAAGTCCAATTTTGTTGAATGAGTGGAATGCCAACAATCGATTCATG CCCTTTTGGCGCTTGTGCACCAGAGAGTGATGTAAGGGTTTTGCAGAGGATATCTCTTCTGGGAAAAAAA                                                    ]




>consensus_13080#0
AAACCCTAGCCCCTCCCCTCTTCTCCTCTTCACAACCTCCTCCCCCTCGCGCCACCGCCC
AACCATCTCCCCTCTCGCCGGAGTACTCGCCGCCGCCTTGCTCCAACCACCGAAGCTCCG
AGGATGATCTCCGCGATATCGTGGGTGCCCAGGGGCGCCGCCAAGCTCGTCCCCGTCGAG
GCGGACGCCCCACGCAGGAGGAGATCGACGAGGCCATCAAGGCCATCGCCCAGCACACGG
AAGGTGGGAGCGACGCCGACGAGGACGCCGACGACGGCGAGGAGAATGGCAACATGGAGG
TCGATGCCGCCGCCGATGAGGAGGAGGAGGAGGTAGACGAGGTCGCGCAGGCAAAGGCCG
CGGCCAAGGCGCTCGCTAAGGGCGCTGTCGATGACGTCGCCGACGAGCTCAAGGAGCTCA
ACATGGACAACTACGACGAGGAGGAGGAAGGTCTCGAGATTTTCAGCTCCGGCCAAGGGG
ACTTGTACTATGCTAGCAATGACCTGGACCCCTATCTCAAGAACAATGATGAGGATGACG
ATGATGAAGAGATTGAAGACATGACTATCAAACCTACTGATTTGATGGTAGTTTGTGCAT
ATAATGAGGATGATGTCAATTCGCTGCAGGTAAATTTACTTGAAGAAACAGAAGACGGCG
ATCTAAATATGTTTGTGCACCATGAGGTGCCTCTAGCTGATTTTCCGTTGTGCACAGCAT
GGATGGATTTTAACCTTAAGGGTGGCGACAAAGGGAATTTCGTAGCTGTTGGCACCATGG
ATCCTGCAATTGAAATTTGGGACCTGGATATAGTCGATGAAGTTCAACCTCACATGGTGC
TAGGAGGACATTCAAAAAAGAAGAAAAAAGTAAAGGGCAAAAAGGCAAAAAAGTACAAGA
AGGGAAGTCATAGAAGTTCTGTGCTTGGTCTTGCATGGAACAAGGAGGTGAGGAATGTTC
TAGCTAGTGCAAGTGCAGACAAAACTGTTAAGATTTGGGATGTATCTGTTGGCAAATGTG
CAGTCACATTGGAACATCATGATGACAAGGTTCAATCTGTTGCTTGGAGCCGACAATCGC
CTGAAGTTCTTCTAAGCGGATCGTTCGATAAATCAGTTGCCATGAATGACATGAAAGATG
GTGGACAGAGTTGTAATAAATGGTCTGTTGAAGCAGATGTAGAAAGCTTAGCTTGGGATC
CGCATAATGAGCACTCCTTCATGGTTAGTCTTGAAAATGGGATGGTTCAAGCATTTGATA
AGCGGACAGCCTCATCAAATTCAAATTCTGGTCGTCCCACGTTTACTCTGCACGCACACG
AGAAGGCTGTATCTTCCATCTCCTTCAGTCCATCTACCCCAAATTTTCTTGCGACAGGCT
CGACTGACAAAATGGTGAAGCTATGGGATTTATCAAACAACCAACCATCGTGCATCGCCT
CTCTGAATCCAAAACTCGGAGCTATTTTCTCGGTATCATTTTCGAATGACAGTCCCTTCT
TGTTGGCCAGCGGAGGATCAAAAGGCAAATTAAAAGTCTGGAACACACTAACGGAACCGG
CTGTAGCTAATAAATTCGGGAAATAGATCCGTAGGAAATTCGACAAGCTTTCCGAGGACC
GATACAAGTGATGCTGGAAACATAATAGCAGTCAACATTGCTGGCTCAAGCGGTTTCTGG
CTATACATTGCTACGCACATGAGGATAGATTTCTAGTTGTGATGTAAGCTTTTCGTTTTG
TCCATGTTATCAAGTCCAATTTTGTTGAACGAGTGGAATGCAAACAATCGATTCATGTAC
CTTTTGGCGCTTGTGCAACAGAAAGTGATGAAAGGGTTTTGCAGTGGATATCTCTTATCG
GNNAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensusID : consensus_13080#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 997
fasta sequence

                              [TCGCGCCACCGCCCAACCATCTCCNCTCTCGCCGGAGTACTCGCCGCCGCCTTGCTCCAACCACCGAAGCTCCGAGGATGATCTCCGCGATATCGTGGGTGCCCAGGGGCGCCGCCAAGCTCGTCCCCGTCGAGGCGGAGCCGCCCACGCAGGAGGAGATCGACGAGGCCATCAAGGCCATCGCCCAGCACACGGAAGGTGGGAGCGACGCCGACGAGGACGCCGACGACGGCGAGGAGAATGGCAACATGGAGGTCGATGCCGCCGCCGATGAGGAGGAGGAGGAGGTAGACGAGGTCGCGCAGGCAAAGGCCGCGGCCAAGGCGCTCGCTAAGGGCGCTGTCGATGACGTCGCCGACGAGCTCAAGGAGCTCAACATGGACAACTACGACGAGGAGGAGGGGGTCTCGAGATTTCAGCTCCGGCCAAGGGGACTTGACTATGCTAGCANTGACCCTGACCCNTATCTCAAGAACAATGATGAGGATGACGATGATGAAGAGTATGNGACNTGACTATCANACCTACTGATTTGGATGAGTTGTGCATATATGAGGATATGCAAATCGCTGNGGTAATTACTTGAAAACAGAGAACGGAGCTAAAATTTTTGTCGACCATAGGTGCTTANCTGAATTTCGTGTCACNNATGGATGATTAACTATAGGTGAACCAAGGATTNCNACTGTGCCCATGTCCTGATGAATTGACCGGATANCATAGTCACTCCTGGCTGAGACTAAAAAAAAATTGGGCAGGCAAACCAAGGGGGTTTAATTCGTCCTGAACGGAGGTGTCTCGCCCACCTTAGGTTTGTGGGCCTCTAAAAGTTGGTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNNNNNNNNNNNNANNNNNATGGNNNNNNNACTCTTCCTTTATGTGTTTATAGGGGNAGNGGGGGGGGGTAGNNNNTNNNNTNTTNANTNTTNTTTNTNNTTTTTTANTTGT]

[+] EMBL AW155096             [TCGCGCCACCGCCCAACCATCTCCNCTCTCGCCGGAGTACTCGCCGCCGCCTTGCTCCAACCACCGAAGCTCCGAGGATGATCTCCGCGATATCGTGGGTGCCCAGGGGCGCCGCCAAGCTCGTCCCCGTCGAGGCGGAGCCGCCCACGCAGGAGGAGATCGACGAGGCCATCAAGGCCATCGCCCAGCACACGGAAGGTGGGAGCGACGCCGACGAGGACGCCGACGACGGCGAGGAGAATGGCAACATGGAGGTCGATGCCGCCGCCGATGAGGAGGAGGAGGAGGTAGACGAGGTCGCGCAGGCAAAGGCCGCGGCCAAGGCGCTCGCTAAGGGCGCTGTCGATGACGTCGCCGACGAGCTCAAGGAGCTCAACATGGACAACTACGACGAGGAGGAGGGGGTCTCGAGATTTCAGCTCCGGCCAAGGGGACTTGACTATGCTAGCANTGACCCTGACCCNTATCTCAAGAACAATGATGAGGATGACGATGATGAAGAGTATGNGACNTGACTATCANACCTACTGATTTGGATGAGTTGTGCATATATGAGGATATGCAAATCGCTGNGGTAATTACTTGAAAACAGAGAACGGAGCTAAAATTTTTGTCGACCATAGGTGCTTANCTGAATTTCGTGTCACNNATGGATGATTAACTATAGGTGAACCAAGGATTNCNACTGTGCCCATGTCCTGATGAATTGACCGGATANCATAGTCACTCCTGGCTGAGACTAAAAAAAAATTGGGCAGGCAAACCAAGGGGGTTTAATTCGTCCTGAACGGAGGTGTCTCGCCCACCTTAGGTTTGTGGGCCTCTAAAAGTTGGTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNNNNNNNNNNNNANNNNNATGGNNNNNNNACTCTTCCTTTATGTGTTTATAGGGGNAGNGGGGGGGGGTAGNNNNTNNNNTNTTNANTNTTNTTTNTNNTTTTTTANTTGT]




>consensus_13080#1
TCGCGCCACCGCCCAACCATCTCCNCTCTCGCCGGAGTACTCGCCGCCGCCTTGCTCCAA
CCACCGAAGCTCCGAGGATGATCTCCGCGATATCGTGGGTGCCCAGGGGCGCCGCCAAGC
TCGTCCCCGTCGAGGCGGAGCCGCCCACGCAGGAGGAGATCGACGAGGCCATCAAGGCCA
TCGCCCAGCACACGGAAGGTGGGAGCGACGCCGACGAGGACGCCGACGACGGCGAGGAGA
ATGGCAACATGGAGGTCGATGCCGCCGCCGATGAGGAGGAGGAGGAGGTAGACGAGGTCG
CGCAGGCAAAGGCCGCGGCCAAGGCGCTCGCTAAGGGCGCTGTCGATGACGTCGCCGACG
AGCTCAAGGAGCTCAACATGGACAACTACGACGAGGAGGAGGGGGTCTCGAGATTTCAGC
TCCGGCCAAGGGGACTTGACTATGCTAGCANTGACCCTGACCCNTATCTCAAGAACAATG
ATGAGGATGACGATGATGAAGAGTATGNGACNTGACTATCANACCTACTGATTTGGATGA
GTTGTGCATATATGAGGATATGCAAATCGCTGNGGTAATTACTTGAAAACAGAGAACGGA
GCTAAAATTTTTGTCGACCATAGGTGCTTANCTGAATTTCGTGTCACNNATGGATGATTA
ACTATAGGTGAACCAAGGATTNCNACTGTGCCCATGTCCTGATGAATTGACCGGATANCA
TAGTCACTCCTGGCTGAGACTAAAAAAAAATTGGGCAGGCAAACCAAGGGGGTTTAATTC
GTCCTGAACGGAGGTGTCTCGCCCACCTTAGGTTTGTGGGCCTCTAAAAGTTGGTGCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNNNNNNNNNNNNAN
NNNNATGGNNNNNNNACTCTTCCTTTATGTGTTTATAGGGGNAGNGGGGGGGGGTAGNNN
NTNNNNTNTTNANTNTTNTTTNTNNTTTTTTANTTGT

consensusID : consensus_13080#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [CAAATTAAAAGTCTGGAACACACTAACGGAACCGGCTGTAGCTAATAAATTCGGGAAATAGATCCGTAGGAAATTCGACAAGCTTTCCGAGGACCGATACAAGTGATGCTGGAAACATAATAGCAGTCAACATTGCTGGCTCAAGCGGTTTCTGGCTATACAATTNTACGCACATGAGGATAGATTTCTAGTTGTGATGTAAGCTTTTCGTTTTGTCCATGTTATCAAGTCCAATTTTGTTGAACGAGTGGAATGCAAACAATCGATTCATGTACCTTTTGGCGCTTGTGCAACAGAAAGTGATGAAAGGGTTTTGCAGTGGATATCTCTTATCGGAAATTTTACTGTGTTAATTTTGTGCGAGATAAAAAAAA]

[+] EMBL AU092357             [CAAATTAAAAGTCTGGAACACACTAACGGAACCGGCTGTAGCTAATAAATTCGGGAAATAGATCCGTAGGAAATTCGACAAGCTTTCCGAGGACCGATACAAGTGATGCTGGAAACATAATAGCAGTCAACATTGCTGGCTCAAGCGGTTTCTGGCTATACAATTNTACGCACATGAGGATAGATTTCTAGTTGTGATGTAAGCTTTTCGTTTTGTCCATGTTATCAAGTCCAATTTTGTTGAACGAGTGGAATGCAAACAATCGATTCATGTACCTTTTGGCGCTTGTGCAACAGAAAGTGATGAAAGGGTTTTGCAGTGGATATCTCTTATCGGAAATTTTACTGTGTTAATTTTGTGCGAGATAAAAAAAA]




>consensus_13080#2
CAAATTAAAAGTCTGGAACACACTAACGGAACCGGCTGTAGCTAATAAATTCGGGAAATA
GATCCGTAGGAAATTCGACAAGCTTTCCGAGGACCGATACAAGTGATGCTGGAAACATAA
TAGCAGTCAACATTGCTGGCTCAAGCGGTTTCTGGCTATACAATTNTACGCACATGAGGA
TAGATTTCTAGTTGTGATGTAAGCTTTTCGTTTTGTCCATGTTATCAAGTCCAATTTTGT
TGAACGAGTGGAATGCAAACAATCGATTCATGTACCTTTTGGCGCTTGTGCAACAGAAAG
TGATGAAAGGGTTTTGCAGTGGATATCTCTTATCGGAAATTTTACTGTGTTAATTTTGTG
CGAGATAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13080#0      AAACCCTAGCCCCTCCCCTCTTCTCCTCTTCACAACCTCCTCCCCCTCGCGCCACCGCCC 60
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      AACCATCTCCCCTCTCGCCGGAGTACTCGCCGCCGCCTTGCTCCAACCACCGAAGCTCCG 120
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      AGGATGATCTCCGCGATATCGTGGGTGCCCAGGGGCGCCGCCAAGCTCGTCCCCGTCGAG 180
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      GCGGACGCCCCACGCAGGAGGAGATCGACGAGGCCATCAAGGCCATCGCCCAGCACACGG 240
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      AAGGTGGGAGCGACGCCGACGAGGACGCCGACGACGGCGAGGAGAATGGCAACATGGAGG 300
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      TCGATGCCGCCGCCGATGAGGAGGAGGAGGAGGTAGACGAGGTCGCGCAGGCAAAGGCCG 360
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      CGGCCAAGGCGCTCGCTAAGGGCGCTGTCGATGACGTCGCCGACGAGCTCAAGGAGCTCA 420
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      ACATGGACAACTACGACGAGGAGGAGGAAGGTCTCGAGATTTTCAGCTCCGGCCAAGGGG 480
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      ACTTGTACTATGCTAGCAATGACCTGGACCCCTATCTCAAGAACAATGATGAGGATGACG 540
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      ATGATGAAGAGATTGAAGACATGACTATCAAACCTACTGATTTGATGGTAGTTTGTGCAT 600
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      ATAATGAGGATGATGTCAATTCGCTGCAGGTAAATTTACTTGAAGAAACAGAAGACGGCG 660
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      ATCTAAATATGTTTGTGCACCATGAGGTGCCTCTAGCTGATTTTCCGTTGTGCACAGCAT 720
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      GGATGGATTTTAACCTTAAGGGTGGCGACAAAGGGAATTTCGTAGCTGTTGGCACCATGG 780
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      ATCCTGCAATTGAAATTTGGGACCTGGATATAGTCGATGAAGTTCAACCTCACATGGTGC 840
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      TAGGAGGACATTCAAAAAAGAAGAAAAAAGTAAAGGGCAAAAAGGCAAAAAAGTACAAGA 900
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      AGGGAAGTCATAGAAGTTCTGTGCTTGGTCTTGCATGGAACAAGGAGGTGAGGAATGTTC 960
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ------------------------------------------------------------
                                                                                   

consensus_13080#0      TAGCTAGTGCAAGTGCAGACAAAACTGTTAAGATTTGGGATGTATCTGTTGGCAAATGTG 1020
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ---------TCGCGCCACCGCCCAACCATCTCCNCTCTCGCCGGAGTACTCGCCGCCGCC 51
                                                                                   

consensus_13080#0      CAGTCACATTGGAACATCATGATGACAAGGTTCAATCTGTTGCTTGGAGCCGACAATCGC 1080
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      TTGCTCCAACCACCGAAGCTCCGAGGATGATCTCCGCGATATCGTGGGTGCCCAGGGGCG 111
                                                                                   

consensus_13080#0      CTGAAGTTCTTCTAAGCGGATCGTTCGATAAATCAGTTGCCATGAATGACATGAAAGATG 1140
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      CCGCCAAGCTCGTCCCCGTCGAGGCGGAGCCGCCCACGCAGGAGGAGATCGACGAGGCCA 171
                                                                                   

consensus_13080#0      GTGGACAGAGTTGTAATAAATGGTCTGTTGAAGCAGATGTAGAAAGCTTAGCTTGGGATC 1200
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      TCAAGGCCATCGCCCAGCACACGGAAGGTGGGAGCGACGCCGACGAGGACGCCGACGACG 231
                                                                                   

consensus_13080#0      CGCATAATGAGCACTCCTTCATGGTTAGTCTTGAAAATGGGATGGTTCAAGCATTTGATA 1260
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      GCGAGGAGAATGGCAACATGGAGGTCGATGCCGCCGCCGATGAGGAGGAGGAGGAGGTAG 291
                                                                                   

consensus_13080#0      AGCGGACAGCCTCATCAAATTCAAATTCTGGTCGTCCCACGTTTACTCTGCACGCACACG 1320
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      ACGAGGTCGCGCAGGCAAAGGCCGCGGCCAAGGCGCTCGCTAAGGGCGCTGTCGATGACG 351
                                                                                   

consensus_13080#0      AGAAGGCTGTATCTTCCATCTCCTTCAGTCCATCTACCCCAAATTTTCTTGCGACAGGCT 1380
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      TCGCCGACGAGCTCAAGGAGCTCAACATGGACAACTACGACGAGGAGGAGGGGGTCTCGA 411
                                                                                   

consensus_13080#0      CGACTGACAAAATGGTGAAGCTATGGGATTTATCAAACAACCAACCATCGTGCATCGCCT 1440
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      GATTTCAGCTCCGGCCAAGGGGACTTGACTATGCTAGCANTGACCCTGACCCNTATCTCA 471
                                                                                   

consensus_13080#0      CTCTGAATCCAAAACTCGGAGCTATTTTCTCGGTATCATTTTCGAATGACAGTCCCTTCT 1500
consensus_13080#2      ------------------------------------------------------------
consensus_13080#1      AGAACAATGATGAGGATGACGATGATGAAGAGTATGNGACNTGACTATCANACCTACTGA 531
                                                                                   

consensus_13080#0      TGTTGGCCAGCGGAGGATCAAAAGGCAAATTAAAAGT-CTGGAACACACTAACGGAACCG 1559
consensus_13080#2      -------------------------CAAATTAAAAGT-CTGGAACACACTAACGGAACCG 34
consensus_13080#1      TTTGGATGAGTTGTGCATATATGAGGATATGCAAATCGCTGNGGTAATTACTTGAAAACA 591
                                                 * **  ***   ***    *       * ** * 

consensus_13080#0      GC---TGTAGCTAATAAATTCGGGAA--ATAGATCCGTAG--GAAATTCGACAAGCTTTC 1612
consensus_13080#2      GC---TGTAGCTAATAAATTCGGGAA--ATAGATCCGTAG--GAAATTCGACAAGCTTTC 87
consensus_13080#1      GAGAACGGAGCTAAAATTTTTGTCGACCATAGGTGCTTANCTGAATTTCGTGTCACNNAT 651
                       *     * ****** *  ** *   *  **** * * **   *** ****     *    

consensus_13080#0      CGAGGACCGA-TACAAGTGATGCTGGAAACATAATAGCAGTCA-ACATTGCTGGCTCAAG 1670
consensus_13080#2      CGAGGACCGA-TACAAGTGATGCTGGAAACATAATAGCAGTCA-ACATTGCTGGCTCAAG 145
consensus_13080#1      GGATGATTAACTATAGGTGAACCAAGGATTNCNACTGTGCCCATGTCCTGATGAATTGAC 711
                        ** **   * ** * ****  *  * *     *  *    **     ** **  *  * 

consensus_13080#0      CGG------------TTTCTGGCT---------ATACATTGCTACGCACATGAGGATAGA 1709
consensus_13080#2      CGG------------TTTCTGGCT---------ATACAATTNTACGCACATGAGGATAGA 184
consensus_13080#1      CGGATANCATAGTCACTCCTGGCTGAGACTAAAAAAAAATTGGGCAGGCAAACCAAGGGG 771
                       ***             * ******         * * * *    *   **     *  * 

consensus_13080#0      TTTCTAGTTGT----GATGTAAGCTTTTCGTTTTGTCCATGTTATCAAGTCC---AATTT 1762
consensus_13080#2      TTTCTAGTTGT----GATGTAAGCTTTTCGTTTTGTCCATGTTATCAAGTCC---AATTT 237
consensus_13080#1      GTTTAATTCGTCCTGAACGGAGGTGTCTCGCCCACCTTAGGTTTGTGGGCCTCTAAAAGT 831
                        **  * * **     * * * *  * ***        * ***     * *    **  *

consensus_13080#0      TGTTGAACGAGTGGAATGCAAACAATCGATTCATGTACCTTTTGGCGCTTGTGCAACAGA 1822
consensus_13080#2      TGTTGAACGAGTGGAATGCAAACAATCGATTCATGTACCTTTTGGCGCTTGTGCAACAGA 297
consensus_13080#1      TGGTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNNNNN 891
                       ** **                                              *        

consensus_13080#0      AAGTGATGAAAGGGTTTTGCAGTGGATATCTCTTATCGGNNAAAAAANNNNNNNNNNNNN 1882
consensus_13080#2      AAGTGATGAAAGGGTTTTGCAGTGGATATCTCTTATCGGA-----AATTTTACTGTGTTA 352
consensus_13080#1      NNNNNNNANNNNNATGGNNNNNNNACTCTTCCTTTATGTGTTTATAGGGGNAGNGGGGGG 951
                                     *           * *  ***   *       *              

consensus_13080#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------- 1920
consensus_13080#2      ATTTTGTGCGAGATAAAAAAAA------------------------ 374
consensus_13080#1      GGGTAGNNNNTNNNNTNTTNANTNTTNTTTNTNNTTTTTTANTTGT 997