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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1135 fasta sequence
[GAGAGAAAGGAGGAGAAAAGTAGTAAAGAGGAAAGGGGGGAGTGAGTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG-AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCAC-TTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAGGAGGTAGAATCTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCAGGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAATAGTCCTGATATCTATATTCTACTGCTTGCAAGGCAGAGGAGCTGTTGACATCCCCTGCATGATCAAAAA]
[+] EMBL CF293670 [GAGAGAAAGGAGGAGAAAAGTAGTAAAGAGGAAAGGGGGGAGTGAGTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCAC TTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTG ]
[+] EMBL AK102752 [ GAAAGGAGGAGAAAAGTAGTAAAGAGGAAAGGGGGGAGTGAGTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCAC TTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAGGAGGTAGAATCTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCAGGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAATAGT ]
[+] EMBL AU031053 [ GTAAAGAGGAAAGGGGGGAGTGAGTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCANTTGCTTATCCATTATATGCCTCTGTGAGAGNAATAGAAAACAAAATCTCCTGTTGATG TCAGCAATGGCTCACTTACTGGGn ]
[+] EMBL OSC109781 [ ccGAGTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTTGTTTGAGCTTACTTTTGCTCCAGTAATTG ]
[+] EMBL C28395 [ GTCTCCCGAGCAACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATNAC TTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGNCTTACCTTGCTTCCATGGNGCTGCTTATGNTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGNCAA ]
[+] EMBL AK061806 [ CTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAG AAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCAC TTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAGGAGGTAGAATCTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCAGGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAATAGTCCTGATATCTATATTCTACTGCTTGCAAGGCAGAGGAGCTGTTGA ]
[+] EMBL AU102145 [ TGCTTATGTTTATGATCACTTTGTGCGNCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAACCCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTGGAGGAGGTAGAATCTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCAGGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAATAGTCCTGATATCTATATTCTACTGCTTGCAAGGCAGAGGAGCTGTTGACATCCCCTGCATGATCAAAAA]
[-] EMBL CF293669 [ TCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTTTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATTTTGGAGGAGGTAGAATTTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCAGGTTGCCGGCTTATTTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTTTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAA AAAAAa ]
[+] EMBL AU031054 [ CACATGGCCAGGGCTGAAAGAGAATCATGGGGCGANAATCCATTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCNCGACCACATACTCATCAGGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGTACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGTGCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAATGATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTNGTGACAACCTCTGGACTTGGTTGGCNGTTAaaaaaaa ]
[-] EMBL CF310812 [ TTGGCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAAa ]
consensusID : consensus_13088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 619 fasta sequence
[GAAGGAGTAGAAAAGTCTCCCGAGCACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAGAAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAA]
[+] EMBL CF310811 [GAAGGAGTAGAAAAGTCTCCCGAGCACGGCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATCCATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCTTTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCTTATCCATTATATGCCTCTGTGAGAGCAATAGAAACAAAATCTCCTGTTGATGATCAGCAATGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTGTTTGAGCTTACTTTTGCTCCAGTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGATGATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAACTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAA]
[+] EMBL BE230397 [ TGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTCTTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTGAATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTAAGTAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13088#0 GAGAGAAAGGAGGAGAAAAGTAGTAAAGAGGAAAGGGGGGAGTGAGTCTCCCGAGCAACG 60
consensus_13088#1 -------------------------------GAAGGAGTAGAAAAGTCTCCCGAGCA-CG 28
**** * ************* **
consensus_13088#0 GCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATC 120
consensus_13088#1 GCTCTCCACTACTAGCCCACAGCTCCCAAGAATCTCTGCCATTTCTTGAGCTGGTCGATC 88
************************************************************
consensus_13088#0 CATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCT 180
consensus_13088#1 CATCGGGGAGGGAGAGAGGTCGAGGAGGCGGCGGAAGGGGAGAGGATGGGGTCTGGATCT 148
************************************************************
consensus_13088#0 TTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCT 240
consensus_13088#1 TTCCTCAAGCTGCTGGCCAACAACTTCGACGTCCTCGCCGGGCCATTAGTTTCACTTGCT 208
************************************************************
consensus_13088#0 TATCCATTATATGCCTCTGTGAGAGCAATAGAAACAAAATCTCCTGTTGATGATCAGCAA 300
consensus_13088#1 TATCCATTATATGCCTCTGTGAGAGCAATAGAAACAAAATCTCCTGTTGATGATCAGCAA 268
************************************************************
consensus_13088#0 TGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTGTTTGAGCTTACTTTTGCTCCA 360
consensus_13088#1 TGGCTCACTTACTGGGTGCTGTACTCGTTTATCACTTTGTTTGAGCTTACTTTTGCTCCA 328
************************************************************
consensus_13088#0 GTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTC 420
consensus_13088#1 GTAATTGAATGGCTTCCTTTTTGGTCCTATGCAAAGTTGTTCTTCAACTGCTGGTTGGTC 388
************************************************************
consensus_13088#0 TTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTG 480
consensus_13088#1 TTACCTTGCTTCCATGGTGCTGCTTATGTTTATGATCACTTTGTGCGGCCAATGTTTGTG 448
************************************************************
consensus_13088#0 AATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGAT 540
consensus_13088#1 AATCGTCAAATAGTAAATGTCTGGTATGTTCCAAGAAAAGAAAACCTGAGTAAACCTGAT 508
************************************************************
consensus_13088#0 GATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAA 600
consensus_13088#1 GATGTGCTATCAGCTGCGGAGAGATATATTGAACAGAATGGACCAGAAGCATTTGAGAAA 568
************************************************************
consensus_13088#0 CTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAATCTATCTTG 660
consensus_13088#1 CTCATCAGCAAGTCTACGAGGCCTTCAACCTCCAAAAGAAGCACAAAGCAA--------- 619
***************************************************
consensus_13088#0 GAGGAGGTAGAATCTGAACACATGGCCAGGGCTGAAAGAGAATCATGGGGCGAAAATCCA 720
consensus_13088#1 ------------------------------------------------------------
consensus_13088#0 TTCTATGATAAAAATTATCGATGCTAGAACAATCTGTTGTTCACGACCACATACTCATCA 780
consensus_13088#1 ------------------------------------------------------------
consensus_13088#0 GGTTGCCGGCTTATCTGGGTTGAGGATAAAGCTTTCCATGTATCTGACTTCAGGATTTGT 840
consensus_13088#1 ------------------------------------------------------------
consensus_13088#0 ACTTTGATGCATCATGCATCCACTGAATGTCATTCAGTCCCAGTTCCCAGAACCAATTGT 900
consensus_13088#1 ------------------------------------------------------------
consensus_13088#0 GCATTGGCTGAACTATTGTAAATAGGTGCTAGTGTTGACAATATCCCTTAGTTCTTAAAT 960
consensus_13088#1 ------------------------------------------------------------
consensus_13088#0 GATGTTATGTAATTCTGTTAATCTGCCTTGCGTGGTAGTGACAACCTCTGGACTTGGTTG 1020
consensus_13088#1 ------------------------------------------------------------
consensus_13088#0 GCAGTTATATTTTTCCCTTCTTGGAGAAGGGCCAGAATTCAAAAATAGTCCTGATATCTA 1080
consensus_13088#1 ------------------------------------------------------------
consensus_13088#0 TATTCTACTGCTTGCAAGGCAGAGGAGCTGTTGACATCCCCTGCATGATCAAAAA 1135
consensus_13088#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||