|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 691 fasta sequence
[ATCCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAGCGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCACCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCC-TCATCGCCGCCGCGCTGCTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAATTCTGGTCTTTTATGCTAAAAAAAAAAAA]
[+] EMBL CF297707 [ATCCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAGCGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCACCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCC TCATCGCCGCCGCGCTGCTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTG ]
[+] EMBL AK059269 [ TCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAGCGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCACCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCC TCATCGCCGCCGCGCTGCTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGCCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTAT ]
[+] EMBL AU031312 [ GGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGA CGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCNGCGACGACGAGCACCACTGCACCCCGTCCGAGCACNTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCG TCC TCATCGCCGCCGCGCTGCTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGTCGACNGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTATTATTTGCTTCA ]
[-] EMBL CF297708 [ ctcCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCC TCATCGCCGCCGCGCTGCTCCTNTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGACGCGGATTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAATTCTGGTCTTTTATGCTAAAAAAA ]
[+] EMBL AU108773 [ gTCCTTCATCGCCGCCGCGCTGCTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTGCTACCCCTCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAATTCTGGTCTTTTATGCTAAAAAAAAAAAA]
consensusID : consensus_13090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence
[CCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAGCGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCACCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCCTCATCGCCGCCGCGCTGGCTCCTCTACTGGATCCTCTTCTCGATCACCTCCTTCGGCGTCAGGTTCGACCAGCTCCCGCAGCGCGTCGACGAGTTCAGGAAGCGGGAAGACGGATCTGATCCCTGCTACCCCTCCCTGATTCAGGGGGTCGAAAGGACCTGACCGGGGGCTTCCGTGGGTTTTTCCTACCCGTTGGGGGTCTTACATTTTAAGGGGAGGCCGGTTGCTGGGTTTTTTTCGCAACAGGCTATGGAGGCCTGAGAAT]
[+] EMBL CA758811 [CCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGCGATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCTGCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAGCGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTACTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCACCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCCTCATCGCCGCCGCGCTGGCTCCTCTACTGGATCCTCTTCTCGATCACCTCCTTCGGCGTCAGGTTCGACCAGCTCCCGCAGCGCGTCGACGAGTTCAGGAAGCGGGAAGACGGATCTGATCCCTGCTACCCCTCCCTGATTCAGGGGGTCGAAAGGACCTGACCGGGGGCTTCCGTGGGTTTTTCCTACCCGTTGGGGGTCTTACATTTTAAGGGGAGGCCGGTTGCTGGGTTTTTTTCGCAACAGGCTATGGAGGCCTGAGAAT]
consensusID : consensus_13090#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 475 fasta sequence
[CCGCTTGGGTACGCGGCGGGAG-CGGAGGCGATCATGCTGCTGCTGCTGACGCTACTGGATCCTCTTCTCCGTCACCTCCCTCGTCGT-CAGGCTCGACCAGCTC-CAGCAGCGC-GTC-GACAAGCTC-AAGAAG-CGGGACGACTGATCTGATCCTGCTACCCCT-CCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGA-TTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAAAACTGGTCTTTTATGCCCCGAAGGACATGATACATCATTTCTCCCAAAAAAAAAAAAGTTGCAAATGTGAGACTCTAGGTTATTTTTGGATTAGTGGGCATAATAGTTTTTACCTGTTTTATCCCGAAAAA]
[+] EMBL BI799344 [CCGCTTGGGTACGCGGCGGGAG CGGAGGCGATCATGCTGCTGCTGCTGACGCTACTGGATCCTCTTCTCCGTCACCTCCCTCGTCGT CAGGCTCGACCAGCTC CAGCAGCGC GTC GACAAGCTC AAGAAG CGGGACGACTGATCTGATCCTGCTACCCCT CCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGA TTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAAAA ]
[+] EMBL BI798996 [CCGCTTGGGTACGCGGCGGGAG CGGAGGCGATCATGCTGCTGCTGCTGACGCTACTGGATCCTCTTCTCCGTCACCTCCCTCGTCGT CAGGCTCGACCAGCTC CAGCAGCGC GTC GACAAGCTC AAGAAG CGGGACGACTGATCTGATCCTGCTACCCCT CCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGA TTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAAAA ]
[+] EMBL BI799496 [CCGCTTGGGTACGCGGCGGGAGCCGGAGGCGATCATGCTGCTGCTGCTGACGCTACTGGATCCTCTTCTCCGTCACCTCCCTCGTCGT CAGGCTCGACCAGCTC CAGCAGCGC GTC GACAAGCTC AAGAAG CGGGACGACTGATCTGATCCTGCTACCCCT CCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGT TT CTGTGTTTTTTTGTA TATGGATATGGATGCTTGAGATCGTGATCCGGA TTTGAGCGTTCTATTATTGGCTCCAGATCTAGTTTGAGTAAAAA ]
[+] EMBL BI798284 [ atcgccGCCGC GCTGCT CCTCTACTGGATCCTCTTCTCCGTCACCTCCCTCGTCGTCCAGGCTCGACCAGCTC CAGCAGCGC GTC GACAAGCTC AAGAAGCCGGGACGACTGATCTGATCCTGCTACCCCT CCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGACTTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTGAGTAAATTCTGGTCTTTTATGCCCCGAAGGACATGATACATCATTTCTCCCAAAAAAAAAAAAGTTGCAAATGTGAGACTCTAGGTTATTTTTGGATTAGTGGGCATAATAGTTTTTACCTGTTTTATCCCGAAAAA]
[+] EMBL BI796080 [ GCTCACAGCAGCGCTGTCAGACAAGCTCAAAGAAG CGGGACG CTGATCTGATCCTGCTACCCCTCCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTC CTGTTTCTTCCCTACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTT CTGTGTTTTTTTGTAGTATGGATATGGATGCTTGAGATCGTGATGCGGA TTTGAGCGTTCTATTAaaa ]
consensusID : consensus_13090#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 56 fasta sequence
[AGTAAATTCTGGTCTTTTATGCTACGAAGGACATGATACATCAATTTNTCCAAAAA]
[+] EMBL AU031313 [AGTAAATTCTGGTCTTTTATGCTACGAAGGACATGATACATCAATTTNTCCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13090#2 ------------------------------------------------------------
consensus_13090#3 ------------------------------------------------------------
consensus_13090#0 ATCCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGC 60
consensus_13090#1 --CCCTCGCCTCCTCTTCCTCCTCCCCGAGCTCGAGTCCGAGAGCCTCCGATTCGGCAGC 58
consensus_13090#2 -------------------CCGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCT 41
consensus_13090#3 ------------------------------------------------------------
consensus_13090#0 GATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCT 120
consensus_13090#1 GATGGCGCTGGAGTGGGTGGTGCTTGGGTACGCGGCGGGAGCGGAGGCGATCATGCTGCT 118
consensus_13090#2 GCTGCTGACGCTACTGGATC--------CTCTTCTCCGTCACCTCCCTCGTCGTCAGGCT 93
consensus_13090#3 ------------------------------------------------------------
consensus_13090#0 GCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAG 180
consensus_13090#1 GCTGCTGACGCTGCCGGGGCTGGACGGGCTCCGGCGGGGGATGATCTCCGTGGTGCGGAG 178
consensus_13090#2 CG-ACCAGCTCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCCTG 152
consensus_13090#3 ------------------------------------------------------------
consensus_13090#0 CGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTA 240
consensus_13090#1 CGCGCTGAAGCCGATGATGTCGGTGGTGCCCTTCTGCCTCTTCCTGCTGATGGACATCTA 238
consensus_13090#2 CTACCCCTCCCTGATTCAGCGCGTCGACTGACCTGACCGGTGGCTTCGCTGTTTCTTCCC 212
consensus_13090#3 ------------------------------------------------------------
consensus_13090#0 CTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCA 300
consensus_13090#1 CTGGAAGTACGAGACGCGGCCCACCTGCGACGACGAGCACCACTGCACCCCGTCCGAGCA 298
consensus_13090#2 TACTCGTTTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTTGTAGTAT 272
consensus_13090#3 ------------------------------------------------------------
consensus_13090#0 CCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCCTCATCGCCGCCGC 360
consensus_13090#1 CCTCCGCCACCAGAAGTCCATCATGAAGTCGCAGCGCAACGCGCTCCTCATCGCCGCCGC 358
consensus_13090#2 GGATATGGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTATTATTTGCTTCAGATCT 332
consensus_13090#3 ------------------------------------------------------------
consensus_13090#0 GCTG-CTCCTCTACTGGATCCTCTTCTCCATCACCTCCCTCGTCGTCAGGCTCGACCAGC 419
consensus_13090#1 GCTGGCTCCTCTACTGGATCCTCTTCTCGATCACCTCCTTCGGCGTCAGGTTCGACCAGC 418
consensus_13090#2 AGTTTGAGTAAAAA--CTGGTCTTTTATGCC--CCGAAGGACATGATACAT-CATTTCTC 387
consensus_13090#3 ------AGTAAATT--CTGGTCTTTTATGCT--ACGAAGGACATGATACAT-CAATTTNT 49
consensus_13090#0 TCCAGCAGCGCGTCGACAAGCTCAAGAAGCGGGACGACTGATCTGATCC-TGCTACCCCT 478
consensus_13090#1 TCCCGCAGCGCGTCGACGAGTTCAGGAAGCGGGAAGACGGATCTGATCCCTGCTACCCCT 478
** * * * ** ** ** **** * * *
consensus_13090#2 CCAAAAAAAAAAAAGTTGCAAATGTGAGACTCTAGGTTATTTTTGGATTAGTGGGCATAA 447
consensus_13090#3 CCAAAAA----------------------------------------------------- 56
consensus_13090#0 CCCTGATTCAGCGCGTCGACTG-ACCTGACCGGTGGCTTCGCTGTTTCTTCCCTACTCGT 537
consensus_13090#1 CCCTGATTCAGGGGGTCGAAAGGACCTGACCGGGGGCTTCCGTGGGTTTTTCCTACCCGT 538
** *
consensus_13090#2 TAGTTTTTACCTGTTTTATCCCGAAAAA-------------------------------- 475
consensus_13090#3 ------------------------------------------------------------
consensus_13090#0 TTGTGTTCTTAGATATATCATGTGATGCGTGTTGCTGTGTTTTTTT-GTAGTATGGATAT 596
consensus_13090#1 TGGGGGTCTTACAT-TTTAAGGGGAGGCCGGTTGCTGGGTTTTTTTCGCAACA-GGCTAT 596
consensus_13090#2 ------------------------------------------------------------
consensus_13090#3 ------------------------------------------------------------
consensus_13090#0 GGATGCTTGAGATCGTGATGCGGATTTGAGCGTTCTATTATTTGCTTCAGATCTAGTTTG 656
consensus_13090#1 GGAGGCCTGAGAAT---------------------------------------------- 610
consensus_13090#2 -----------------------------------
consensus_13090#3 -----------------------------------
consensus_13090#0 AGTAAATTCTGGTCTTTTATGCTAAAAAAAAAAAA 691
consensus_13090#1 -----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||