Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13101 cluster # 13101       Sequences # 12       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13101#0 length = 2603 sequences # 11  
 consensus_13101#1 length = 636 sequences # 1  
consensusID : consensus_13101#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 2603
fasta sequence 
                              [CCCTTGCGGTCTCGCTACCTCTTCCTCTCTCTCGTCGGCTCGTCGCCGGCGCGCCACCTCCGCCGCCGTTGAAGCCCTCGCGTTCGCCGCTTCTCTCCCCCAACCAACGAAGCCCTAGCGCGTTCGCCTCGCCGCCCACCGGCGATGCTCTCCGGCGTCAAGTTTATCCCCCGGGAGCAGATCGGCGAGGATGCCCTAGGCGGCGCCGGCTCGGCGGGGTCCGACAGCTCCGAGGATAGGCGGCGGCGGAAGAAGCGGGGCAGGAAGGGGAGGGACAAGGAGGAGAGGCGGGACCGGAGGCGCCGGCGGAGGCGGAGCAAGTACGGCTCGGACTCCGAGGAGGGGTCCGATAGCGGAGACTCGATCGAAGAGGAGGAGGAGAAAGGGTTGAGCCGGAGCAAGCACCGGAGGAAGCATCAGAGGCGGCGCCATGAGTTCTCCGATGACGACGATGATGATAACGAGGAGTCCAGTGGTGAATCTGATAAGAGAAGAGGCAGTCGCAAGAGCAAGCTTGGAGGTGCCGCAGGTGATGATGATGATGAGGAGGAGGAGGATGAGGGAATTGGAGGTGAGGAGTTGAGAGCTAGTGATATTGTCAGGAAGGAGATGGGCCTCGAATGGATGCTCAAGTCGGCAAGCAGTGGTCGGGCGGAGAGCAGCCAAGCTGGCGGGGCTGACAAAGATGAGGAGGAGGTTGCACCCGAGGAGGTGAAGAAAGCCAATCCAAAGGAATTGAATCCATACCTGAGGGATAATGGCAGTGGGTACCCTGATGAATCTAGCCCTTCAAATGCAGGCAACCAGTTGCTTGCTTCCTCTGTGGTTGGTGATGGAGGTGCTAGCTGGAGGCTCAAAGCTTTGAAGCGTGCAAAAGAGCAAGCAGCTCGTGAAGGAAAACAACTTGAGGAGGTTGTTGGTGAGAGATGGGGCTCGTTAGGCCACTTAGCTGCATCAGTGTCAGCATCTAGAGCTGCCCCTTCGCATGCTCATTTACATGCCATTAGAGGCAGAAAAGCTGGGCAAGCAGGCAGCTCAGAAGAACATTCCAAAGAAAATCCAAAGGAGGGTCAGCAAGGTGGAGACAGTGGTAGACGTGAATACTTAAAAGATGTTTCCTCTCGGCATCATGCAATGAGAAAACCTAAACCTGATTCTGTACCATGGAAAAGGAATAGGCAGAATATTTCTTCTGAGGATCAGGCACTTATCTCTTCAGCGATAGCAGGAATCAATAAGTTCTCTAATGATGGAAGCTTTTTGGAAAAGATTAATAATCTTGAAAGCAAGACTGTAAATGTTTTGACTGCAGAGGTTGATGAGCTCAAGTCTGATAAGGGTAGCTCAAAGAAAGCACCTTCAGTTAGCACTCAAAAGCTAAATGCGAACCAGTTAGCAGCAAAGATTCTGCAGCTCCGAATGAAAGGCAAGCATGAAGAAGCTGAACAACTTTCGCGAGAAATGGAGGCGGTGCTGGAGAATGAGGATACTGCTGTTGAAGAACCTAGGCATGAAGTGAGGAGTTCAACCAGGAACACAATAAAGCCTAGTGCAGCTGATCGCAGGAAAAGAGAAGAGGATGCTGACCGGCATCTTGCAAATAAAATTATGCACAATAAACAGTACAACATGTCTAAAAGTATAGAGGATGAATATGATTTTGGTGATGCCCCCAGTAAGAAAGGCAAAAGGAGGAACAAAGATGCACATGAGGAGAGGAGAAGCACTCATAGGCTCACAACTCAGAAAGAGCGCTGTATGTATTGCTTCGAGAACCCATCACGGCCAAAGCATCTGGTTGTTGCTATAGGAAACTTCACTTACTTGATGCTGCCACAGCTTGAGCCTGTTGTCCCTGGGCACTGCATTATTCTGCCATTGCAGCATGAGTCTGCAACAAGAACAGTTGATAGAAGTGTCTGGGAGGAGATCCGCAACTTTAAGAAGTGCCTCCTGAAAATGTTCGCGCAGCAGGACAAGGATATTGTTTTCATGGAGACTGTTATAAGCTTGGCCAAACAACGCAGGCACTGCATGATTGAATGCATCCCTATCCCCTCCGAAGTTTCAAACAATGCTCCCATGTACTTCAAGAAGGCAATTGATGAAGCGGAAGAAGAATGGACCCAGCATGACATGAAGAAACTTATTCCAACAAAGGGAAACCTGC-AC-CAAGTCAT-CCCAGAGAACTTTGCCT-AC-TTTCATGTAGAGTTCGGGCTCGACCGTGGATTTGTCCATGTCATAGACGATGAGAGCAAATTCAGTGCAGGTTTTGGGTTG-AATGTCATCAGAGGGATGCTCCAGTTGCGGGAAGAGGACATGCACAGGCGCCGAAGGCATG-AATCGATGGATAATCAGAAACAAGCTGTTGCTAATTTCATGAAGGACTGGGAACCCTTTGATTGGACCAAACAGCTTGATTAGATGTAAATACAGTCACCAGAACCTCTGTAAGAACAGCCTTCTGGAAATTGTACGACGAATTTTTGTAGGAAATGTCATGTCCTGTATTCATGTTAACACATTTGTTTCTTCACCTGATACTGAATGTAGCTTAAATCTATAATTTCGAAATTGACATCAACCCCGGCCATAACGCCATT]

[+] EMBL AK102723             [CCCTTGCGGTCTCGCTACCTCTTCCTCTCTCTCGTCGGCTCGTCGCCGGCGCGCCACCTCCGCCGCCGTTGAAGCCCTCGCGTTCGCCGCTTCTCTCCCCCAACCAACGAAGCCCTAGCGCGTTCGCCTCGCCGCCCACCGGCGATGCTCTCCGGCGTCAAGTTTATCCCCCGGGAGCAGATCGGCGAGGATGCCCTAGGCGGCGCCGGCTCGGCGGGGTCCGACAGCTCCGAGGATAGGCGGCGGCGGAAGAAGCGGGGCAGGAAGGGGAGGGACAAGGAGGAGAGGCGGGACCGGAGGCGCCGGCGGAGGCGGAGCAAGTACGGCTCGGACTCCGAGGAGGGGTCCGATAGCGGAGACTCGATCGAAGAGGAGGAGGAGAAAGGGTTGAGCCGGAGCAAGCACCGGAGGAAGCATCAGAGGCGGCGCCATGAGTTCTCCGATGACGACGATGATGATAACGAGGAGTCCAGTGGTGAATCTGATAAGAGAAGAGGCAGTCGCAAGAGCAAGCTTGGAGGTGCCGCAGGTGATGATGATGATGAGGAGGAGGAGGATGAGGGAATTGGAGGTGAGGAGTTGAGAGCTAGTGATATTGTCAGGAAGGAGATGGGCCTCGAATGGATGCTCAAGTCGGCAAGCAGTGGTCGGGCGGAGAGCAGCCAAGCTGGCGGGGCTGACAAAGATGAGGAGGAGGTTGCACCCGAGGAGGTGAAGAAAGCCAATCCAAAGGAATTGAATCCATACCTGAGGGATAATGGCAGTGGGTACCCTGATGAATCTAGCCCTTCAAATGCAGGCAACCAGTTGCTTGCTTCCTCTGTGGTTGGTGATGGAGGTGCTAGCTGGAGGCTCAAAGCTTTGAAGCGTGCAAAAGAGCAAGCAGCTCGTGAAGGAAAACAACTTGAGGAGGTTGTTGGTGAGAGATGGGGCTCGTTAGGCCACTTAGCTGCATCAGTGTCAGCATCTAGAGCTGCCCCTTCGCATGCTCATTTACATGCCATTAGAGGCAGAAAAGCTGGGCAAGCAGGCAGCTCAGAAGAACATTCCAAAGAAAATCCAAAGGAGGGTCAGCAAGGTGGAGACAGTGGTAGACGTGAATACTTAAAAGATGTTTCCTCTCGGCATCATGCAATGAGAAAACCTAAACCTGATTCTGTACCATGGAAAAGGAATAGGCAGAATATTTCTTCTGAGGATCAGGCACTTATCTCTTCAGCGATAGCAGGAATCAATAAGTTCTCTAATGATGGAAGCTTTTTGGAAAAGATTAATAATCTTGAAAGCAAGACTGTAAATGTTTTGACTGCAGAGGTTGATGAGCTCAAGTCTGATAAGGGTAGCTCAAAGAAAGCACCTTCAGTTAGCACTCAAAAGCTAAATGCGAACCAGTTAGCAGCAAAGATTCTGCAGCTCCGAATGAAAGGCAAGCATGAAGAAGCTGAACAACTTTCGCGAGAAATGGAGGCGGTGCTGGAGAATGAGGATACTGCTGTTGAAGAACCTAGGCATGAAGTGAGGAGTTCAACCAGGAACACAATAAAGCCTAGTGCAGCTGATCGCAGGAAAAGAGAAGAGGATGCTGACCGGCATCTTGCAAATAAAATTATGCACAATAAACAGTACAACATGTCTAAAAGTATAGAGGATGAATATGATTTTGGTGATGCCCCCAGTAAGAAAGGCAAAAGGAGGAACAAAGATGCACATGAGGAGAGGAGAAGCACTCATTGGCTCACAACTCAGAAAGAGCGCTGTATGTATTGCTTCGAGAACCCATCACGGCCAAAGCATCTGGTTGTTGCTATAGGAAACTTCACTTACTTGATGCTGCCACAGCTTGAGCCTGTTGTCCCTGGGCACTGCATTATTCTGCCATTGCAGCATGAGTCTGCAACAAGAACAGTTGATAGAAGTGTCTGGGAGGAGATCCGCAACTTTAAGAAGTGCCTCCTGAAAATGTTCGCGCAGCAGGACAAGGATATTGTTTTCATGGAGACTGTTATAAGCTTGGCCCAACAACGCAGGCACTGCATGATTGAATGCATCCCTATCCCCTCCGAAGTTTCAAACAATGCTCCCATGTACTTCAAGAAGGCAATTGATGAAGCGGAAGAAGAATGGACCCAGCATGACATGAAGAAACTTATTCCAACAAAGGGAAACCTGC AC CAAGTCAT CCCAGAGAACTTTGCCT AC TTTCATGTAGAGTTCGGGCTCGACCGTGGATTTGCCCATGTCATAGACGATGAGAGCAAATTCAGTGCAGGTTTTGGGTTG AATGTCATCAGAGGGATGCTCCAGTTGCGGGAAGAGGACATGCACAGGCGCCGAAGGCATG AATCGATGGATAATCAGAAACAAGCTGTTGCTAATTTCATGAAGGACTGGGAACCCTTTGATTGGACCAAACAGCTTGATTAGATGTAAATACAGTCACCAGAACCTCTGTAAGAACAGCCTTCTGGAAATTGTACGACGAATTTTTGTAGGAAATGTCATGTCCTGTATTCATGTTAACACATTTGTTTCTTCACCTGATACTGAATGTAGCTTAAATCTATAATTTCGAAATTGACATCAACCCCGGCCA          ]
[+] EMBL CB630839             [                      TCCTCTCTCTCGTCGGCTCGTCGCCGGCGCGCCACCTCCGCCGCCGCTGAAGCCCTCGCGTTCGCCGCTTCTCTCCTCCAACCAACGAAGCCCTAGCGCGTTCGCCTCGCCGCCCACCGGTGATGCTCTCCGGCGTCAAGTTTATCCCCCGGGAGCAGATCGGCGAGGATGCCCTAGGCGGCGCCGGCTCGGCGGGGTCCGACAGCTCCGAGGATAGGCGGCGGCGGAAGAAGCGGGGCAGGAAGGGGAGGGACAAGGAGGAGAGGCGGGACCGGAGGCGCCGGCGGAGGCGGAGCAAGTACGGCTCGGACTCCGAGGAGGGGTCCGATAGCGGAGACTCGATCGACGAGGAGGAGGAGAAGGGGTTGAGCCGGAGCAAGCACCGGAGGAAGCATCAGAGGCGGCGCCATGAGTTCTCCGATGACGACGATGATGATGACGAGGAGTCCAGTGGTGAATCTGATAAGAGAAGAGGCAGTCGCAAGAGCAAGCTTGGAGGTGCCGCAGGTGATGATGATGATGAGGAGGAGGAGGATGAGGGAATTGGAGGTGAGGAGTTGAGAGCTAGTGATATTGTCAGGAAGGAGATGGGCCTCGAATGGATGCTCAAGTCGGCAAGCAGTGGTCGGGCTGAGAGCAGCCAAGCTCGCGGGGCTGACAAAGATGAGGAGGAGGTTGCACCCGAGGAGGTGAAGAAAGCCAATCCAAAGGAATTGAATCCATACCTGAGGGATAATGGCAGTGGGTACCCTGATGAATCTAGCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSS2629A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATGGATGCTCAAGTCGGCAAGCAGTGGTCGGGCGGAGAGCAGCCAAGCTGGCGGGGCTGACAAAGATGAGGAGGAGGTTGCACCCGAGGAGGTGAAGAAAGCCAATCCAAAGGAATTGAATCCATACCTGAGGGATAATGGCAGTGGGTACCCTGATGAATCTAGCCCTTCAAATGCAGGCAACCAGTTGCTTGCTTCCTCTGTGGTTGGTGATGGAGGTGCTAGCTGGAGGCTCAAAGCTTTGAAGCGTGCAAAAGAGCAAGCAGCTCGTGAAGGAAAACAACTTGAGGAGGTTGTTGGTGAGAGATGGGGCTCGTTAGGCCACTTAGCTGCATCAGTGTCAGCATCTAGAGCTGCCCCTTCGCATGCTCATTTACATGCCATTAGAGGCAGAAAAGCTTGGCAAGCAGGCAGCTCAG AGGACATTCC AAG AAATCC AAGG GGGTCAGCAA GTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSS2576A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATGGATGCTCAAGTCGGCAAGCAGTGGTCGGGCGGAGAGCAGCCAAGCTGGCGGGGCTGACAAAGATGAGGAGGAGGTTGCACCCGAGGAGGTGAAGAAAGCCAATCCAAAGGAATTGAATCCATACCTGAGGGATAATGGCAGTGGGTACCCTGATGAATCTAGCCCTTCAAATGCAGGCAACCAGTTGCTTGCTTCCTCTGTGGTTGGTGATGGAGGTGCTAGCTGGAGGCTCAAAGCTTTGAAGCGTGCAAAAGAGCAAGCAGCTCGTGAAGGAAAACAACTTGAGGAGGTTGTTGGTGAGAGATGGGGCTCGTTAGGCCACTTAGCTGCATCAGTGTCAGCATCTAGAGCTGCCCCTTCGCATGCTtca                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSS2646A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATGGATGCTCAAGTCGGCAAGCAGTGGTCGGGCGGAGAGCAGCCAAGCTGGCGGGGCTGACAAAGATGAGGAGGAGGTTGCACCCGAGGAGGTGAAGAAAGCCAATCCAAAGGAATTGAATCCATACCTGAGGGATAATGGCAGTGGGTACCCTGATGAATCTAGCCCTTCAAATGCAGGCAACCAGTTGCTTGCTTCCTCTGTGGTTGGTGATGGAGGTGCTAGCTGGAGGCTCAAAGCTTTGAAGCGTGCAAAAGAGCAAGCAGCTCGTGAAGGAAAACAACTTGAGGAGGTTGTTGGTGAGAGATGGGGCTCGTTAGGCCACTTAGCTGCATCAGTGTCAGCATCTAGAGCTGCCCCTTCGCATGCTCATTTACATGCCATTAGAGGCAGAAAAGCTGGGCAAGCAGGCAGCTCAGAAG ACATTCCAAAG AAATCC AAGGA GGNCAGCAAGt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF304650             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TAGCTGGAGGCTCAAAGCTTTGAAGCGTGCAAAAGAGCAAGCAGCTCGTGAAGGAAAACAACTTGAGGAGGTTGTTGGTGAGAGATGGGGCTCGTTAGGCCACTTAGCTGCATCAGTGTCAGCATCTAGAGCTGCCCCTTCGCATGCTCATTTACATGCCATTAGAGGCAGAAAAGCTGGGCAAGCAGGCAGCTCAGAAGAACATTCCAAAGAAAATCCAAAGGAGGGTCAGCAAGGTGGAGACAGTGGTAGACGTGAATACTTAAAAGATGTTTCCTCTCGGCATCATGCAATGAGAAAACCTAAACCTGATTCTGTACCATGGAAAAGGAATAGGCAGAATATTTCTTCTGAGGATCAGGCACTTATCTCTTCAGCGATAGCAGGAATCAATAAGTTCTCTAATGATGGAAGCTTTTTGGAAAAGATTAATAATCTTGAAAGCAAGACTGTAAATGTTTTGACTGCAGAGGTTGATGAGCTCAAGTCTGATAAGGGTAGCTCAAAGAAAGCACCTTCAGTTAGCACTCAAAAGCTAAATGCGAACCAGTTAGCAGCAAAGATTCTGCAGCTCCGAATGAAAGGCAAGCATGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB630936             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AGCTGATCGCAGGAAAAGAGAAGAGGATGCTGACCGGCATCTTGCAAATAAAATTATGCACAATAAACAGTACAACATGTCTAAAAGTATAGAGGATGAATATGATTTTGGTGATGCCCCCAGTAAGAAAGGCAAAAGGAGGAACAAAGATGCACATGAGGAGAGGAGAAGCACTCATAGGCTCACAACTCAGAAAGAGCGCTGTATGTATTGCTTCGAGAACCCATCACGGCCAAAGCATCTGGTTGTTGCTATAGGAAACTTCACTTACTTGATGCTGCCACAGCTTGAGCCTGTTGTCCCTGGGCACTGCATTATTCTGCCATTGCAGCATGAGTCTGCAACAAGAACAGTTGATAGAAGTGTCTGGGAGGAGATCCGCAACTTTAAGAAGTGCCTCCTGAAAATGTTCGCGCAGCAGGACAAGGATATTGTTTTCATGGAGACTGTTATAAGCTTGGCCAAACAACGCAGGCACTGCATGATTGAATGCATCCCTATCCCCTCCGAAGTTTCAAACAATGCTCCCATGTACTTCAAGAAGGCAATTGATGAAGCGGAAGAAGAATGGACCCAGCATGACATGAAGAAACTTATTCCAACAAAGGGAAACCTGC AC CAAGTCAT CCCAGAGAACTTTGCCT AC TTTCATGTAGAGTTCGGGCTCGACCGTGGATTTGTCCATGTCATAGACGATGAGAGCAAATTCAGTGCAGGTTTTGGGTTG AATGTCATCAGAGGGATGCTCCAGTTGCGGGAAGAGGACATGCACAGGCGCCGAAGGCATG AATCG                                                                                                                                                                                                                                                                 ]
[+] EMBL CA766724             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTTTGGTGATGCCCCCAGTAAGAAAGGCAAAAGGAGGAACAAAGATGCACATGAGGAGAGGAGAAGCACTCATAGGCTCACAACTCAGAAAGAGCGCTGTATGTATTGCTTCGAGAACCCATCACGGCCAAAGCATCTGGTTGTTGCTATAGGAAACTTCACTTACTTGATGCTGCCACAGCTTGAGCCTGTTGTCCCTGGGCACTGCATTATTCTGCCATTGCAGCATGAGTCCGCAACAAGAACAGTTGGTAGAAGTGTCTGGGAGGAGATCCGCAACTTTAAGAAGTGCCTCCTGAAAATGTTCGCGCAGCAGGACAAGGATATTGTTTTCATGGAGGCTGTTATAAGCTTGGCCAAACAACGCAGGCACTGCATGATTGAATGCATCCCTATCCCCTCCGAAGTTTCAAACAATGCTCCCATGTACTTCAAGAAGGCAATTGATGAAGCGGAAGAAGAATGGACCCAGCATGACATGAAGAAACTTATTCCAACAAAGGGAAACCTGC AC CAAGTCAT CCCAGAGAACTTTGCCT AC TTTCATGTAGAGTTCGGGCTCGACCGTGGATTTGTCCATGTCATAGACGATGAGAGCAAATTCAGTGCAGGTTTTGGGTTG AATGTCATCAGAGGGATGCTCCAGTTGCGGGAAGAGGACATGCACAGGCGCCGAAGGCATG AATCGATGGATAATCAGAAACAAGCTGNTGCTAATTTCATGAANGACTGGGAGCCCTTTGATTGGACCAAACAGCTTGATTAGATGTAAATA                                                                                                                                                                          ]
[+] EMBL BI796843             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AACCTGCAACACAAGTCATCCCCAGAGAACTTTGCCTGACTTTTCATGTAGAGTTCGGGCTCGACCGTGGATTTGTCCATGTCATAGACGATGAGA CCAATTCAGTGCA GTTTTGGGTTGAAATGTCATCAGAGGGATGCTCCAGTTGCGGGAAGAGAACATGCACAGGCGCCGAAGGCATG AATCGATGGATAATCAGAAACAAGCTGTTGCTAATTTCATGAAGGACTGGG ACCCTTTGATTGGACCAAACAGCTTCATTAGATGTAAATACAGTCACCAGAACCTCTGTAAGAACAGCCTGCTGGAAATTGTACGACGAATTTTTGTAGGAAATGTCATGTCCTGTATTCATGTTAACACATTTGTTTCTTCACCTGATACTGAATGTAGCTTAAATCTATAATTTCGAAATTGACATCAACCCCGGCCATAACGCCATT]
[+] EMBL AA751706             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGGCTCGACCGTGGATTTGTCCATGTCATAGACGATGAGAGCAAATTCAGTGCAGGTTTTGGGTTG AATGTCATCAGAGGGATGCTCCAGTTGCGGGAAGAGGACATGCACAGGCGCCGAAG  ATGNAATCGATGGATAATCAGAAACAAGCTGTTGCTAATTTCATGAAGGACTGGGAGCCCTTTGATTGGACCAAACAGCTTGATTAGATGTAAATACAGTCACCAGAACCTCTGTAAGAACAGCCTGCTGGAAATTGTACGACGAATTTTTGTAGGAAATGTCATGTCCTGTATTCATGTTAACACATTTGTTTCTTCACC                                                                 ]
[+] EMBL AU225877             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gccgctAGAAACAAGCTGTTGCTAATTTCATGAAGGACTGGGAACCCTTTGATTGGACCAAACAGCTTGATTAGATGTAAATACAGTCACCAGAACCTCTGTAAGAACAGCCTTCTGGAAATTGTACGACGAATTTTTGTAGGAAATGTCATGTCCTGTATTCATGTTAACACATTTGTTTCTTCACCTGATACTGAATGTAGCTTAAATCTATAATTTCGAAATTGACAgcgg                   ]




>consensus_13101#0
CCCTTGCGGTCTCGCTACCTCTTCCTCTCTCTCGTCGGCTCGTCGCCGGCGCGCCACCTC
CGCCGCCGTTGAAGCCCTCGCGTTCGCCGCTTCTCTCCCCCAACCAACGAAGCCCTAGCG
CGTTCGCCTCGCCGCCCACCGGCGATGCTCTCCGGCGTCAAGTTTATCCCCCGGGAGCAG
ATCGGCGAGGATGCCCTAGGCGGCGCCGGCTCGGCGGGGTCCGACAGCTCCGAGGATAGG
CGGCGGCGGAAGAAGCGGGGCAGGAAGGGGAGGGACAAGGAGGAGAGGCGGGACCGGAGG
CGCCGGCGGAGGCGGAGCAAGTACGGCTCGGACTCCGAGGAGGGGTCCGATAGCGGAGAC
TCGATCGAAGAGGAGGAGGAGAAAGGGTTGAGCCGGAGCAAGCACCGGAGGAAGCATCAG
AGGCGGCGCCATGAGTTCTCCGATGACGACGATGATGATAACGAGGAGTCCAGTGGTGAA
TCTGATAAGAGAAGAGGCAGTCGCAAGAGCAAGCTTGGAGGTGCCGCAGGTGATGATGAT
GATGAGGAGGAGGAGGATGAGGGAATTGGAGGTGAGGAGTTGAGAGCTAGTGATATTGTC
AGGAAGGAGATGGGCCTCGAATGGATGCTCAAGTCGGCAAGCAGTGGTCGGGCGGAGAGC
AGCCAAGCTGGCGGGGCTGACAAAGATGAGGAGGAGGTTGCACCCGAGGAGGTGAAGAAA
GCCAATCCAAAGGAATTGAATCCATACCTGAGGGATAATGGCAGTGGGTACCCTGATGAA
TCTAGCCCTTCAAATGCAGGCAACCAGTTGCTTGCTTCCTCTGTGGTTGGTGATGGAGGT
GCTAGCTGGAGGCTCAAAGCTTTGAAGCGTGCAAAAGAGCAAGCAGCTCGTGAAGGAAAA
CAACTTGAGGAGGTTGTTGGTGAGAGATGGGGCTCGTTAGGCCACTTAGCTGCATCAGTG
TCAGCATCTAGAGCTGCCCCTTCGCATGCTCATTTACATGCCATTAGAGGCAGAAAAGCT
GGGCAAGCAGGCAGCTCAGAAGAACATTCCAAAGAAAATCCAAAGGAGGGTCAGCAAGGT
GGAGACAGTGGTAGACGTGAATACTTAAAAGATGTTTCCTCTCGGCATCATGCAATGAGA
AAACCTAAACCTGATTCTGTACCATGGAAAAGGAATAGGCAGAATATTTCTTCTGAGGAT
CAGGCACTTATCTCTTCAGCGATAGCAGGAATCAATAAGTTCTCTAATGATGGAAGCTTT
TTGGAAAAGATTAATAATCTTGAAAGCAAGACTGTAAATGTTTTGACTGCAGAGGTTGAT
GAGCTCAAGTCTGATAAGGGTAGCTCAAAGAAAGCACCTTCAGTTAGCACTCAAAAGCTA
AATGCGAACCAGTTAGCAGCAAAGATTCTGCAGCTCCGAATGAAAGGCAAGCATGAAGAA
GCTGAACAACTTTCGCGAGAAATGGAGGCGGTGCTGGAGAATGAGGATACTGCTGTTGAA
GAACCTAGGCATGAAGTGAGGAGTTCAACCAGGAACACAATAAAGCCTAGTGCAGCTGAT
CGCAGGAAAAGAGAAGAGGATGCTGACCGGCATCTTGCAAATAAAATTATGCACAATAAA
CAGTACAACATGTCTAAAAGTATAGAGGATGAATATGATTTTGGTGATGCCCCCAGTAAG
AAAGGCAAAAGGAGGAACAAAGATGCACATGAGGAGAGGAGAAGCACTCATAGGCTCACA
ACTCAGAAAGAGCGCTGTATGTATTGCTTCGAGAACCCATCACGGCCAAAGCATCTGGTT
GTTGCTATAGGAAACTTCACTTACTTGATGCTGCCACAGCTTGAGCCTGTTGTCCCTGGG
CACTGCATTATTCTGCCATTGCAGCATGAGTCTGCAACAAGAACAGTTGATAGAAGTGTC
TGGGAGGAGATCCGCAACTTTAAGAAGTGCCTCCTGAAAATGTTCGCGCAGCAGGACAAG
GATATTGTTTTCATGGAGACTGTTATAAGCTTGGCCAAACAACGCAGGCACTGCATGATT
GAATGCATCCCTATCCCCTCCGAAGTTTCAAACAATGCTCCCATGTACTTCAAGAAGGCA
ATTGATGAAGCGGAAGAAGAATGGACCCAGCATGACATGAAGAAACTTATTCCAACAAAG
GGAAACCTGCACCAAGTCATCCCAGAGAACTTTGCCTACTTTCATGTAGAGTTCGGGCTC
GACCGTGGATTTGTCCATGTCATAGACGATGAGAGCAAATTCAGTGCAGGTTTTGGGTTG
AATGTCATCAGAGGGATGCTCCAGTTGCGGGAAGAGGACATGCACAGGCGCCGAAGGCAT
GAATCGATGGATAATCAGAAACAAGCTGTTGCTAATTTCATGAAGGACTGGGAACCCTTT
GATTGGACCAAACAGCTTGATTAGATGTAAATACAGTCACCAGAACCTCTGTAAGAACAG
CCTTCTGGAAATTGTACGACGAATTTTTGTAGGAAATGTCATGTCCTGTATTCATGTTAA
CACATTTGTTTCTTCACCTGATACTGAATGTAGCTTAAATCTATAATTTCGAAATTGACA
TCAACCCCGGCCATAACGCCATT

consensusID : consensus_13101#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence 
                              [TGAGTTGAACTCTTTTGGATCAGCGGGGGCGGCGTTTTAAACTGCGGTTTCTTTGTTCTGAGGCTTGGGGTGTTGGTGACCTCTGCCTCTCTCTCGTCGGCTCGTCGCCGGCGCGCCACCTCCGCCGCCGCTGAAGCCCTCGCGTTCGCCGCTTCTCTCCTCCAACCAACGAAGCCCTAGCGCGTTCGCCTCGCCGCCCACCGGTGATGCTCTCCGGCGTCAAGTTTATCCCCCGGGAGCAGATCGGCGAGGATGCCCTAGGCGGCGCCGGCTCGGCGGGGTCCGACAGCTCCGAGGATAGGCGGCGGCGGAAGAAGCGGGGCAGGAAGGGGAGGGACAAGGAGGAGAGGCGGGACCGGAGGCGCCGGCGGAGGCGGAGCAAGTACGGCTCGGACTCCGAGGAGGGGTCCGATAGCGGAGACTCGATCGACGAGGAGGTAGAGAAAGGGTTGAGCCGGAGCAAGCCCCGAGGAAGCATCAGAAGCGGCGCCATGAGTTCTTCGATGACGACGAGAATGATGACGAGGAGGTCCAGTGGGTGAATCTGATAAGAGAAGAAGCCGTTCTCAAGAGCAAGCTTGGAGGTGCCCCCAGCGTGGATGAGATTAGTGAGACGTGGATCCCGGTACTTGAGTC]

[+] EMBL CA758489             [TGAGTTGAACTCTTTTGGATCAGCGGGGGCGGCGTTTTAAACTGCGGTTTCTTTGTTCTGAGGCTTGGGGTGTTGGTGACCTCTGCCTCTCTCTCGTCGGCTCGTCGCCGGCGCGCCACCTCCGCCGCCGCTGAAGCCCTCGCGTTCGCCGCTTCTCTCCTCCAACCAACGAAGCCCTAGCGCGTTCGCCTCGCCGCCCACCGGTGATGCTCTCCGGCGTCAAGTTTATCCCCCGGGAGCAGATCGGCGAGGATGCCCTAGGCGGCGCCGGCTCGGCGGGGTCCGACAGCTCCGAGGATAGGCGGCGGCGGAAGAAGCGGGGCAGGAAGGGGAGGGACAAGGAGGAGAGGCGGGACCGGAGGCGCCGGCGGAGGCGGAGCAAGTACGGCTCGGACTCCGAGGAGGGGTCCGATAGCGGAGACTCGATCGACGAGGAGGTAGAGAAAGGGTTGAGCCGGAGCAAGCCCCGAGGAAGCATCAGAAGCGGCGCCATGAGTTCTTCGATGACGACGAGAATGATGACGAGGAGGTCCAGTGGGTGAATCTGATAAGAGAAGAAGCCGTTCTCAAGAGCAAGCTTGGAGGTGCCCCCAGCGTGGATGAGATTAGTGAGACGTGGATCCCGGTACTTGAGTC]




>consensus_13101#1
TGAGTTGAACTCTTTTGGATCAGCGGGGGCGGCGTTTTAAACTGCGGTTTCTTTGTTCTG
AGGCTTGGGGTGTTGGTGACCTCTGCCTCTCTCTCGTCGGCTCGTCGCCGGCGCGCCACC
TCCGCCGCCGCTGAAGCCCTCGCGTTCGCCGCTTCTCTCCTCCAACCAACGAAGCCCTAG
CGCGTTCGCCTCGCCGCCCACCGGTGATGCTCTCCGGCGTCAAGTTTATCCCCCGGGAGC
AGATCGGCGAGGATGCCCTAGGCGGCGCCGGCTCGGCGGGGTCCGACAGCTCCGAGGATA
GGCGGCGGCGGAAGAAGCGGGGCAGGAAGGGGAGGGACAAGGAGGAGAGGCGGGACCGGA
GGCGCCGGCGGAGGCGGAGCAAGTACGGCTCGGACTCCGAGGAGGGGTCCGATAGCGGAG
ACTCGATCGACGAGGAGGTAGAGAAAGGGTTGAGCCGGAGCAAGCCCCGAGGAAGCATCA
GAAGCGGCGCCATGAGTTCTTCGATGACGACGAGAATGATGACGAGGAGGTCCAGTGGGT
GAATCTGATAAGAGAAGAAGCCGTTCTCAAGAGCAAGCTTGGAGGTGCCCCCAGCGTGGA
TGAGATTAGTGAGACGTGGATCCCGGTACTTGAGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13101#0      ------------------------------------------------------------
consensus_13101#1      TGAGTTGAACTCTTTTGGATCAGCGGGGGCGGCGTTTTAAACTGCGGTTTCTTTGTTCTG 60
                                                                                   

consensus_13101#0      -CCCTTGCGGTCTCGCT-ACCTCTTCCTCTCTCTCGTCGGCTCGTCGCCGGCGCGCCACC 58
consensus_13101#1      AGGCTTGGGGTGTTGGTGACCTCTGCCTCTCTCTCGTCGGCTCGTCGCCGGCGCGCCACC 120
                          **** *** * * * ****** ***********************************

consensus_13101#0      TCCGCCGCCGTTGAAGCCCTCGCGTTCGCCGCTTCTCTCCCCCAACCAACGAAGCCCTAG 118
consensus_13101#1      TCCGCCGCCGCTGAAGCCCTCGCGTTCGCCGCTTCTCTCCTCCAACCAACGAAGCCCTAG 180
                       ********** ***************************** *******************

consensus_13101#0      CGCGTTCGCCTCGCCGCCCACCGGCGATGCTCTCCGGCGTCAAGTTTATCCCCCGGGAGC 178
consensus_13101#1      CGCGTTCGCCTCGCCGCCCACCGGTGATGCTCTCCGGCGTCAAGTTTATCCCCCGGGAGC 240
                       ************************ ***********************************

consensus_13101#0      AGATCGGCGAGGATGCCCTAGGCGGCGCCGGCTCGGCGGGGTCCGACAGCTCCGAGGATA 238
consensus_13101#1      AGATCGGCGAGGATGCCCTAGGCGGCGCCGGCTCGGCGGGGTCCGACAGCTCCGAGGATA 300
                       ************************************************************

consensus_13101#0      GGCGGCGGCGGAAGAAGCGGGGCAGGAAGGGGAGGGACAAGGAGGAGAGGCGGGACCGGA 298
consensus_13101#1      GGCGGCGGCGGAAGAAGCGGGGCAGGAAGGGGAGGGACAAGGAGGAGAGGCGGGACCGGA 360
                       ************************************************************

consensus_13101#0      GGCGCCGGCGGAGGCGGAGCAAGTACGGCTCGGACTCCGAGGAGGGGTCCGATAGCGGAG 358
consensus_13101#1      GGCGCCGGCGGAGGCGGAGCAAGTACGGCTCGGACTCCGAGGAGGGGTCCGATAGCGGAG 420
                       ************************************************************

consensus_13101#0      ACTCGATCGAAGAGGAGGAGGAGAAAGGGTTGAGCCGGAGCAAGCACCGGAGGAAGCATC 418
consensus_13101#1      ACTCGATCGACGAGGAGGTAGAGAAAGGGTTGAGCCGGAGCAAGCCCCG-AGGAAGCATC 479
                       ********** *******  ************************* *** **********

consensus_13101#0      AGAGGCGGCGCCATGAGTTCTCCGATGACGACGATGATGATAACGAGGAG-TCCAGTGG- 476
consensus_13101#1      AGAAGCGGCGCCATGAGTTCTTCGATGACGACGAGAATGATGACGAGGAGGTCCAGTGGG 539
                       *** ***************** ************  ***** ******** ******** 

consensus_13101#0      TGAATCTGATAAGAGAAGAGGCAGT-CGCAAGAGCAAGCTTGGAGGTGCCGCAGGTGATG 535
consensus_13101#1      TGAATCTGATAAGAGAAGAAGCCGTTCTCAAGAGCAAGCTTGGAGGTGCCCCCAGCGTGG 599
                       ******************* ** ** * ********************** *  * *  *

consensus_13101#0      ATGATGATGAGGAGGAGGAGGATGAGGGAATTGGAGGTGAGGAGTTGAGAGCTAGTGATA 595
consensus_13101#1      ATGA-GATTAGTGAGACGTGGATCCCGGTACTTGAGTC---------------------- 636
                       **** *** **   ** * ****   ** * * ***                        

consensus_13101#0      TTGTCAGGAAGGAGATGGGCCTCGAATGGATGCTCAAGTCGGCAAGCAGTGGTCGGGCGG 655
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      AGAGCAGCCAAGCTGGCGGGGCTGACAAAGATGAGGAGGAGGTTGCACCCGAGGAGGTGA 715
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      AGAAAGCCAATCCAAAGGAATTGAATCCATACCTGAGGGATAATGGCAGTGGGTACCCTG 775
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      ATGAATCTAGCCCTTCAAATGCAGGCAACCAGTTGCTTGCTTCCTCTGTGGTTGGTGATG 835
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      GAGGTGCTAGCTGGAGGCTCAAAGCTTTGAAGCGTGCAAAAGAGCAAGCAGCTCGTGAAG 895
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      GAAAACAACTTGAGGAGGTTGTTGGTGAGAGATGGGGCTCGTTAGGCCACTTAGCTGCAT 955
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      CAGTGTCAGCATCTAGAGCTGCCCCTTCGCATGCTCATTTACATGCCATTAGAGGCAGAA 1015
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      AAGCTGGGCAAGCAGGCAGCTCAGAAGAACATTCCAAAGAAAATCCAAAGGAGGGTCAGC 1075
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      AAGGTGGAGACAGTGGTAGACGTGAATACTTAAAAGATGTTTCCTCTCGGCATCATGCAA 1135
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      TGAGAAAACCTAAACCTGATTCTGTACCATGGAAAAGGAATAGGCAGAATATTTCTTCTG 1195
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      AGGATCAGGCACTTATCTCTTCAGCGATAGCAGGAATCAATAAGTTCTCTAATGATGGAA 1255
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      GCTTTTTGGAAAAGATTAATAATCTTGAAAGCAAGACTGTAAATGTTTTGACTGCAGAGG 1315
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      TTGATGAGCTCAAGTCTGATAAGGGTAGCTCAAAGAAAGCACCTTCAGTTAGCACTCAAA 1375
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      AGCTAAATGCGAACCAGTTAGCAGCAAAGATTCTGCAGCTCCGAATGAAAGGCAAGCATG 1435
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      AAGAAGCTGAACAACTTTCGCGAGAAATGGAGGCGGTGCTGGAGAATGAGGATACTGCTG 1495
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      TTGAAGAACCTAGGCATGAAGTGAGGAGTTCAACCAGGAACACAATAAAGCCTAGTGCAG 1555
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      CTGATCGCAGGAAAAGAGAAGAGGATGCTGACCGGCATCTTGCAAATAAAATTATGCACA 1615
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      ATAAACAGTACAACATGTCTAAAAGTATAGAGGATGAATATGATTTTGGTGATGCCCCCA 1675
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      GTAAGAAAGGCAAAAGGAGGAACAAAGATGCACATGAGGAGAGGAGAAGCACTCATAGGC 1735
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      TCACAACTCAGAAAGAGCGCTGTATGTATTGCTTCGAGAACCCATCACGGCCAAAGCATC 1795
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      TGGTTGTTGCTATAGGAAACTTCACTTACTTGATGCTGCCACAGCTTGAGCCTGTTGTCC 1855
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      CTGGGCACTGCATTATTCTGCCATTGCAGCATGAGTCTGCAACAAGAACAGTTGATAGAA 1915
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      GTGTCTGGGAGGAGATCCGCAACTTTAAGAAGTGCCTCCTGAAAATGTTCGCGCAGCAGG 1975
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      ACAAGGATATTGTTTTCATGGAGACTGTTATAAGCTTGGCCAAACAACGCAGGCACTGCA 2035
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      TGATTGAATGCATCCCTATCCCCTCCGAAGTTTCAAACAATGCTCCCATGTACTTCAAGA 2095
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      AGGCAATTGATGAAGCGGAAGAAGAATGGACCCAGCATGACATGAAGAAACTTATTCCAA 2155
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      CAAAGGGAAACCTGCACCAAGTCATCCCAGAGAACTTTGCCTACTTTCATGTAGAGTTCG 2215
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      GGCTCGACCGTGGATTTGTCCATGTCATAGACGATGAGAGCAAATTCAGTGCAGGTTTTG 2275
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      GGTTGAATGTCATCAGAGGGATGCTCCAGTTGCGGGAAGAGGACATGCACAGGCGCCGAA 2335
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      GGCATGAATCGATGGATAATCAGAAACAAGCTGTTGCTAATTTCATGAAGGACTGGGAAC 2395
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      CCTTTGATTGGACCAAACAGCTTGATTAGATGTAAATACAGTCACCAGAACCTCTGTAAG 2455
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      AACAGCCTTCTGGAAATTGTACGACGAATTTTTGTAGGAAATGTCATGTCCTGTATTCAT 2515
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      GTTAACACATTTGTTTCTTCACCTGATACTGAATGTAGCTTAAATCTATAATTTCGAAAT 2575
consensus_13101#1      ------------------------------------------------------------
                                                                                   

consensus_13101#0      TGACATCAACCCCGGCCATAACGCCATT 2603
consensus_13101#1      ----------------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)