cluster # 13104

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Oryza sativa
cluster # 13104 cluster # 13104 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13104#0 length = 611 sequences # 7

consensus_13104#1 length = 338 sequences # 1
consensus_13104#2 length = 227 sequences # 4

consensusID : consensus_13104#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 611
fasta sequence

                              [CTCGCCTCCCCACCATCCTCCGCCGCCGCCGCCCTCCGCCCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCC-GGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGCAACAGTGAGAATAATCATATCGTTTNTGCGCCCTGTAGACATGTCAGGTGCTTAATATNTGTAANAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCCCTTTACTTTTATTTNTGCCAGAGGCATTGAACTCTNTACATCTGGGTTNGTACTGCGTTATTGGCTCATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTGAATGAGCCCGGAAAAAAAAAAAAAA]

[+] EMBL CF327288             [CTCGCCTCCCCACCATCCTCCGCCGCCGCCGCCCTCCGCCCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCC GGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGC                                                                                                                                                                                                                                                          ]
[+] EMBL AK062186             [ TCGCCTCCCCACCATCCTCCGCCGCCGCCGCCCTCCGCCCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCC GGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGC                                                                                                                                                                                                                                                          ]
[+] EMBL AK120450             [    CCTCCCCACCATCCTCCGCCGCCGCCGCCCTCCGCCCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCC GGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGC                                                                                                                                                                                                                                                          ]
[+] EMBL BE039903             [             ccgCCGCCGCCGCCGCCCTCCTCCGCGCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGTGGTCGCGTCGCCTCGCCGGGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCACTGTACTGGTCAATACTTCGATTATTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGC                                                                                                                                                                                                                                                          ]
[+] EMBL BE039904             [             ccgCCGCCGCCGCCGCCCTCCTCCGCGCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGTGGTCGCGTCGCCTCGCCGGGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCACTGTACTGGTCAATACTTCGATTATTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGC                                                                                                                                                                                                                                                          ]
[+] EMBL C27479               [                               CCCTCCGCCCTCGCCGCCGCTCCGTTGGAATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCC GGCGGCCGTCGCGAGCATGTCGGATGAGGAGGTATCTGACCCGAA GCACTCCTAGAGGATCGATCGAAGGCTAAGTGTGTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACGCA                                                                                                                                                                                                                                                         ]
[+] EMBL AU181760             [                                                                                                                                                                                      TGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTNAAGATGATNAGACTGGTCAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCCGAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTNTCTCTTGCTACCGTTTACGCAACAGTGAGAATAATCATATCGTTTNTGCGCCCTGTAGACATGTCAGGTGCTTAATATNTGTAANAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCCCTTTACTTTTATTTNTGCCAGAGGCATTGAACTCTNTACATCTGGGTTNGTACTGCGTTATTGGCTCATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTGAATGAGCCCGGAAAAAAAAAAAAAA]




>consensus_13104#0
CTCGCCTCCCCACCATCCTCCGCCGCCGCCGCCCTCCGCCCTCGCCGCCGCTCCGTTGGA
ATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCCGGCGGCCGTCGCGAGCATG
TCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGT
GTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGT
CAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCC
GAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACG
CAACAGTGAGAATAATCATATCGTTTNTGCGCCCTGTAGACATGTCAGGTGCTTAATATN
TGTAANAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCCCTTTACT
TTTATTTNTGCCAGAGGCATTGAACTCTNTACATCTGGGTTNGTACTGCGTTATTGGCTC
ATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTGAATGAGCCCGGAAA
AAAAAAAAAAA

consensusID : consensus_13104#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [CCAGAGGTCGAGACAAGGGGATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGCCAGTTTTTCATCCACCCCTTTACTTTTATTTGTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCCTATTGCGGTATTGGCTCGTGCTTTTTCCCTTTCGGTTTATAATTGATATATCCCTAGATTGTGAATGAGCACGGAATGCTGTCATTTGCCTTTTCCATATTGCCTGTCTTGTTTTTTGCACGTCTGCCACTGTCTGGATTTGTGTACCGGGTTAAAAAAACCCCGAGCTGGCAATAACGATTTTTTATCTTTGGTGTCAAAAAAAAAAAAAA]

[-] EMBL CA760498             [CCAGAGGTCGAGACAAGGGGATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGCCAGTTTTTCATCCACCCCTTTACTTTTATTTGTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCCTATTGCGGTATTGGCTCGTGCTTTTTCCCTTTCGGTTTATAATTGATATATCCCTAGATTGTGAATGAGCACGGAATGCTGTCATTTGCCTTTTCCATATTGCCTGTCTTGTTTTTTGCACGTCTGCCACTGTCTGGATTTGTGTACCGGGTTAAAAAAACCCCGAGCTGGCAATAACGATTTTTTATCTTTGGTGTCAAAAAAAAAAAAAA]




>consensus_13104#1
CCAGAGGTCGAGACAAGGGGATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGCC
AGTTTTTCATCCACCCCTTTACTTTTATTTGTGCCAGAGGCATTGAACTCTCTACATCTG
GGTTCCTATTGCGGTATTGGCTCGTGCTTTTTCCCTTTCGGTTTATAATTGATATATCCC
TAGATTGTGAATGAGCACGGAATGCTGTCATTTGCCTTTTCCATATTGCCTGTCTTGTTT
TTTGCACGTCTGCCACTGTCTGGATTTGTGTACCGGGTTAAAAAAACCCCGAGCTGGCAA
TAACGATTTTTTATCTTTGGTGTCAAAAAAAAAAAAAA

consensusID : consensus_13104#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 227
fasta sequence

                              [GACATGTCAGGTGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCACTTTACTTTTATTTCTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCGTACTGCGTTATTGGCTCATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTG-AATGAGCAC-GGAATGCTGTCATTTGCCTTTT-CCAAAAAA]

[+] EMBL AU165655             [GACATGTCAGGTGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCACTTTACTTTTATTTCTGCCAGAGG ATTGAACTCTCTACATCTGGGTTCGTACTGCGTTATTGGCTCATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTGNAATGAGCACGGGAATGCTGTCATTTGCCTTTTNCCAAAAA ]
[+] EMBL AU057763             [GACATGTCAGGTGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCACTTTACTTTTATTTCTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCGTACTGCGTTATTGGCTCATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTG AATGAGCAC GGAATGCTGTCATTTGCCTTTT CCAAAAAA]
[+] EMBL BI799479             [GACATGTCAGGTGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCACCACTTTACTTTTATTTCTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCCTACTGCGTTATTGGCTCGTGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTG AATGAGCAaaaaaaaaa                        ]
[+] EMBL AU165039             [ gCATGTCGGGTGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCACCACTTTACTTTTATTTCTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCCTACTGCGTTATTGGCTCGTGCTTTTTCCCTTTCGGTTCGTAATTGATATATCCCCAGATTGTG AATGAGCAC GGAATGCTGTCATTTGCCTTTT CCAAAA  ]




>consensus_13104#2
GACATGTCAGGTGCTTAATATCTGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACA
GTTTTTCAACCGCCACTTTACTTTTATTTCTGCCAGAGGCATTGAACTCTCTACATCTGG
GTTCGTACTGCGTTATTGGCTCATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCC
AGATTGTGAATGAGCACGGAATGCTGTCATTTGCCTTTTCCAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13104#0      CTCGCCTCCCCACCATCCTCCGCCGCCGCCGCCCTCCGCCCTCGCCGCCGCTCCGTTGGA 60
consensus_13104#2      ------------------------------------------------------------
consensus_13104#1      ------------------------------------------------------------
                                                                                   

consensus_13104#0      ATCCGGATCTTCCTTCGTCGAGGGGGTCGCGTCGCCTCGCCGGCGGCCGTCGCGAGCATG 120
consensus_13104#2      ------------------------------------------------------------
consensus_13104#1      ------------------------------------------------------------
                                                                                   

consensus_13104#0      TCGGATGAGGAGGTATCTGACCCGAAGGCACTCCTAGAGGATCGATCGAAGGCTAAGTGT 180
consensus_13104#2      ------------------------------------------------------------
consensus_13104#1      ------------------------------------------------------------
                                                                                   

consensus_13104#0      GTGTACCAGTGGTATGAATATCAGAAATGTGTCAAGAGAATTGAAGATGATGAGACTGGT 240
consensus_13104#2      ------------------------------------------------------------
consensus_13104#1      ------------------------------------------------------------
                                                                                   

consensus_13104#0      CAGAAGCATTGTACTGGTCAATACTTCGATTACTGGAAATGTGTCGACAAAAATGTTGCC 300
consensus_13104#2      ------------------------------------------------------------
consensus_13104#1      ------------------------------------------------------------
                                                                                   

consensus_13104#0      GAGAAGCTTTTTGATAGCTTAAAATGACAAGGAAAATGTTCTCTCTTGCTACCGTTTACG 360
consensus_13104#2      ------------------------------------------------------------
consensus_13104#1      ------------------------------------------------------------
                                                                                   

consensus_13104#0      CAACAGTGAGAATAATCATATCGTTTNTGCGCCCTGTAGACATGTCAGGTGCTTAATATN 420
consensus_13104#2      --------------------------------------GACATGTCAGGTGCTTAATATC 22
consensus_13104#1      --------------------------------CCAGAGGTCGAGACAAG-----GGGATC 23
                                                             * *  * ** *        ** 

consensus_13104#0      TGTAANAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCCCTTTACT 480
consensus_13104#2      TGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGACAGTTTTTCAACCGCCACTTTACT 82
consensus_13104#1      TGTAAGAAAAAAAGTTTTGCCTGTCGGATAATACGCCAGTTTTTCATCCACCCCTTTACT 83
                       ***** ***************************** ********** ** ** *******

consensus_13104#0      TTTATTTNTGCCAGAGGCATTGAACTCTNTACATCTGGGTTNGTACTGCGTTATTGGCTC 540
consensus_13104#2      TTTATTTCTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCGTACTGCGTTATTGGCTC 142
consensus_13104#1      TTTATTTGTGCCAGAGGCATTGAACTCTCTACATCTGGGTTCCTATTGCGGTATTGGCTC 143
                       ******* ******************** ************  ** **** *********

consensus_13104#0      ATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTGAATGAGCCCGGAAA 600
consensus_13104#2      ATGCTTTTTCCCTTTCGGTTCATAATTGATATATCCCCAGATTGTGAATGAGCACGGAAT 202
consensus_13104#1      GTGCTTTTTCCCTTTCGGTTTATAATTGATATATCCCTAGATTGTGAATGAGCACGGAAT 203
                        ******************* **************** *************** ***** 

consensus_13104#0      AAAAAAAAAAA------------------------------------------------- 611
consensus_13104#2      GCTGTCATTTGCCTTTTCCAAAAAA----------------------------------- 227
consensus_13104#1      GCTGTCATTTGCCTTTTCCATATTGCCTGTCTTGTTTTTTGCACGTCTGCCACTGTCTGG 263
                             *                                                     

consensus_13104#0      ------------------------------------------------------------
consensus_13104#2      ------------------------------------------------------------
consensus_13104#1      ATTTGTGTACCGGGTTAAAAAAACCCCGAGCTGGCAATAACGATTTTTTATCTTTGGTGT 323
                                                                                   

consensus_13104#0      ---------------
consensus_13104#2      ---------------
consensus_13104#1      CAAAAAAAAAAAAAA 338