These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1052 fasta sequence [TCCACGCCACGCCACGCGCGCGAAAAAGCGAGGGAGAAAAGAAAAGGAGAGCGAGCGCTTGCGTTGCAGGCGCGCGCGCCAATCATCTCCCGCTCCCTCTTATCCTCCCCTCTCTTCCACCGCTTCTTCTTCCTCCAGTCCCCCCACATTGCTTTCCTACCTTCTCTTCTTCTCTCCTCGGATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCGTCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCGCGGCGCCAG-GGCGTCGACGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC-GTTTGTGGAGCACC-AAAGAGAAGGTTC-AAGCCGTAC-GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCAGTGGGGGAAAAGCA-TCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTAGAGAAGAAACTACACTTTTTTAGGGGTGAAGATATCCATCCCCTATATTATTGACAACAAATTGACTTCTCATTGTGCCGCATCGTCGGCAAATTAAAGCCTGTTTGATCAAAAAAAGATNAAAAGCCCAACCTTGTGATACCAAAAGATGCAAACTCAAACTTNAAAGGAGGCCAAACTGCCTATTTAGTATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF326760 [TCCACGCCACGCCACGCGCGCGAAAAAGCGAGGGAGAAAAGAAAAGGAGAGCGAGCGCTTGCGTTGCAGGCGCGCGCGCCAATCATCTCCCGCTCCCTCTTATCCTCCCCTCTCTTCCACCGCTTCTTCTTCCTCCAGTCCCCCCACATTGCTTTCCTACCTTCTCTTCTTCTCTCCTCGGATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCGTCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCGCGGCGCCAG GGCGTCGACGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTC ] [+] EMBL AK058434 [ TCTCTTCCACCGCTTCTTCTTCCTCCAGTCCCCCCACATTGCTTTCCTACCTTCTCTTCTTCTCTCCTCGGATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCATCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCGCGGCGCCAG GGCGTCGACGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCAGTGGGGGAAAAGCA TCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTAGAGAAGAAACTACACTTTTTTAGGGGTGAAGATATCCATCCCCTATATTATTGACAACAAATTGACTTCTCATTGTGCCGCATCGTCGGCAAATTAAAGCCTGTTTGATCA ] [+] EMBL BE228834 [ TCTTCCTCCAGTCCCCCCACATTGCTTTCCTACCTTCTCTTCTTCTCTCCTCGGATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGCTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCGTCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCGCGGCGCCAG GGCGTCTACGGCGTCNGCGAAGATCACGATGCGCTTCGGCGTCGCGTCCAANCAGGCCTACATCTGCCGCGACTGCGGGTNCATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGANCACC AAANAAAAAGTTC AAGCCGTAC GAACCTAANGTGGCCAANAACGCCAACGCCACCGATNCCCNCAAGGCTAGGAAAGANCANCTGAAAAANGAC AAACCGTCCGGCAA CGTTG CTATCCGTATC CCNTCGGGATACTT CATTGGCCGGCTTGT ] [-] EMBL CB680854 [ TGCTTTCCTACCTTCTCTTCTTCTCTCCTCGGATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCATCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCGCGGCGCCAG GGCGTCGACGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCAGTGGGGGAAAAGCA TCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTAGAGAAGAAACTACACTTTTTTAGGGGTGAAGATATCCATCCCCTATATTATTGA ] [+] EMBL AU083561 [ ATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCG GCCCGCCGCCGCCGCGGC CNGCTCCGGTCGTCATCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCG GGC CAAGAGGCGTCGANGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCCGGTTTNTGGAGCACCAAAAGAGAAGGTTCAAAGCNGTACGGAGCCTAAGGTGGCCAAGAcgnc ] [+] EMBL OSC0181 [ GCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGC ] [+] EMBL CF326323 [ ACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCGTCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCTGTGTCGCCGCGGCGCGGCGCCAG GGCGTCGACGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCACTGGGGAAAAA ] [+] EMBL BI807198 [ GATGCGCTTCGGC TCGCGTCCAAGCAGGCCTACATCTGCCGCGACT CGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCAGTGGGGGAAAAGCA TCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTAGAGAAGAAACTACACTTTTTTAGGGGTGAAGATATCCATCCCCTATATTATTGAC AC AATTGACTTCTaaaaa ] [+] EMBL CA999559 [ GGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCAGTGGGGGAAAAGCA TCAAAGAGTTTTAAATTTT ] [+] EMBL CA998924 [ GGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAATGTTC AAGCCGTAC GAGCCTAAGGTGGCCTAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCT ] [+] EMBL CA767515 [ CCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATAAGAGATGATCGATCCACTGCACTGGGGAAAAAGCA TCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTAGAGAAGAAACTACACTTTTTTAGGGGTGAAGATATCCATCCCCTATATTATTGACAACAAATTGACTTCTCATTGTGCCGCATCATCGGCAAATTAAAGCCTGTTTGATCAAAAAAA ] [+] EMBL AU096973 [ CANTGCAGT GGGGAAAAGCATTCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTANAGAAGAAACTNCACTTTTTTAGGGGTNAAGATATCCATCCCCTATATTATTGCCAACAAATTGNCTTCTCATTGTGCCGCATNGTNGGCAAATTAAAGCCTGTTTGATCATCCTACGATNAAAAGCCCAACCTTGTGATACCAAAAGATGCAAACTCAAACTTNAAAGGAGGCCAAACTGCCTATTTAGTATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||