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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1052 fasta sequence
[TCCACGCCACGCCACGCGCGCGAAAAAGCGAGGGAGAAAAGAAAAGGAGAGCGAGCGCTTGCGTTGCAGGCGCGCGCGCCAATCATCTCCCGCTCCCTCTTATCCTCCCCTCTCTTCCACCGCTTCTTCTTCCTCCAGTCCCCCCACATTGCTTTCCTACCTTCTCTTCTTCTCTCCTCGGATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCGTCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCGCGGCGCCAG-GGCGTCGACGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC-GTTTGTGGAGCACC-AAAGAGAAGGTTC-AAGCCGTAC-GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCAGTGGGGGAAAAGCA-TCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTAGAGAAGAAACTACACTTTTTTAGGGGTGAAGATATCCATCCCCTATATTATTGACAACAAATTGACTTCTCATTGTGCCGCATCGTCGGCAAATTAAAGCCTGTTTGATCAAAAAAAGATNAAAAGCCCAACCTTGTGATACCAAAAGATGCAAACTCAAACTTNAAAGGAGGCCAAACTGCCTATTTAGTATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF326760 [TCCACGCCACGCCACGCGCGCGAAAAAGCGAGGGAGAAAAGAAAAGGAGAGCGAGCGCTTGCGTTGCAGGCGCGCGCGCCAATCATCTCCCGCTCCCTCTTATCCTCCCCTCTCTTCCACCGCTTCTTCTTCCTCCAGTCCCCCCACATTGCTTTCCTACCTTCTCTTCTTCTCTCCTCGGATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCGTCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCGCGGCGCCAG GGCGTCGACGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTC ]
[+] EMBL AK058434 [ TCTCTTCCACCGCTTCTTCTTCCTCCAGTCCCCCCACATTGCTTTCCTACCTTCTCTTCTTCTCTCCTCGGATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCATCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCGCGGCGCCAG GGCGTCGACGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCAGTGGGGGAAAAGCA TCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTAGAGAAGAAACTACACTTTTTTAGGGGTGAAGATATCCATCCCCTATATTATTGACAACAAATTGACTTCTCATTGTGCCGCATCGTCGGCAAATTAAAGCCTGTTTGATCA ]
[+] EMBL BE228834 [ TCTTCCTCCAGTCCCCCCACATTGCTTTCCTACCTTCTCTTCTTCTCTCCTCGGATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGCTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCGTCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCGCGGCGCCAG GGCGTCTACGGCGTCNGCGAAGATCACGATGCGCTTCGGCGTCGCGTCCAANCAGGCCTACATCTGCCGCGACTGCGGGTNCATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGANCACC AAANAAAAAGTTC AAGCCGTAC GAACCTAANGTGGCCAANAACGCCAACGCCACCGATNCCCNCAAGGCTAGGAAAGANCANCTGAAAAANGAC AAACCGTCCGGCAA CGTTG CTATCCGTATC CCNTCGGGATACTT CATTGGCCGGCTTGT ]
[-] EMBL CB680854 [ TGCTTTCCTACCTTCTCTTCTTCTCTCCTCGGATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCATCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCGCGGCGCCAG GGCGTCGACGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCAGTGGGGGAAAAGCA TCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTAGAGAAGAAACTACACTTTTTTAGGGGTGAAGATATCCATCCCCTATATTATTGA ]
[+] EMBL AU083561 [ ATCTCGAGCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCG GCCCGCCGCCGCCGCGGC CNGCTCCGGTCGTCATCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCGGCGCCGCCGCGGCG GGC CAAGAGGCGTCGANGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCCGGTTTNTGGAGCACCAAAAGAGAAGGTTCAAAGCNGTACGGAGCCTAAGGTGGCCAAGAcgnc ]
[+] EMBL OSC0181 [ GCTCGCCACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGC ]
[+] EMBL CF326323 [ ACGCGCCTGTTTCTTGTGCTGCGGTGAGCGGTGGTGATGGCCGCCCTGCAGCTGCAGGCGCTGCGCGCGCCCGCCGCCGCCGCGGCGCCGCTCCGGTCGTCGTCGTTCTGCACGCCGCTGTCGCTGCCGGCGCCTGTGTCGCCGCGGCGCGGCGCCAG GGCGTCGACGGCGTCGGCGAGGATCACGATGCGCTTCGGCGTCGCGTCCAAGCAGGCCTACATCTGCCGCGACTGCGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCACTGGGGAAAAA ]
[+] EMBL BI807198 [ GATGCGCTTCGGC TCGCGTCCAAGCAGGCCTACATCTGCCGCGACT CGGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCAGTGGGGGAAAAGCA TCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTAGAGAAGAAACTACACTTTTTTAGGGGTGAAGATATCCATCCCCTATATTATTGAC AC AATTGACTTCTaaaaa ]
[+] EMBL CA999559 [ GGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAAGGTTC AAGCCGTAC GAGCCTAAGGTGGCCAAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCTGAAAAAGGACGAAGCCGTCGGGCAAGCGTTGCCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATACGAGATGATCGATCCACTGCAGTGGGGGAAAAGCA TCAAAGAGTTTTAAATTTT ]
[+] EMBL CA998924 [ GGGTACATCTACAGCGACAGGACCCCCTTCGACAAGCTTCCCGACAAGTACTTCTGCCCC GTTTGTGGAGCACC AAAGAGAATGTTC AAGCCGTAC GAGCCTAAGGTGGCCTAGAACGCCAACGCCACCGATGCCCGCAAGGCTAGGAAGGAGCAGCT ]
[+] EMBL CA767515 [ CCTATCGGTATCGCCGTCGGGATACTTGCATTGGCCGGCTTGTTCTTCTACTTGAACAGTGTCTACTAGATGGAGAAACATAAGAGATGATCGATCCACTGCACTGGGGAAAAAGCA TCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTAGAGAAGAAACTACACTTTTTTAGGGGTGAAGATATCCATCCCCTATATTATTGACAACAAATTGACTTCTCATTGTGCCGCATCATCGGCAAATTAAAGCCTGTTTGATCAAAAAAA ]
[+] EMBL AU096973 [ CANTGCAGT GGGGAAAAGCATTCAAAGAGTTTTAAATTTTGCCTTCTTTTCAAACGTGCTGTTATATGCTTCTAGGAAATCCATGGCAAGTTTCTGTATCTTANAGAAGAAACTNCACTTTTTTAGGGGTNAAGATATCCATCCCCTATATTATTGCCAACAAATTGNCTTCTCATTGTGCCGCATNGTNGGCAAATTAAAGCCTGTTTGATCATCCTACGATNAAAAGCCCAACCTTGTGATACCAAAAGATGCAAACTCAAACTTNAAAGGAGGCCAAACTGCCTATTTAGTATTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
clustalw multiple alignements is not computed in this case |
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||