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Oryza sativa
cluster # 13129 cluster # 13129       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13129#0 length = 1407 sequences # 7  
consensus_13129#1 length = 858 sequences # 4  
consensus_13129#2 length = 307 sequences # 1  

consensusID : consensus_13129#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1407
fasta sequence
                              [CTCTGCNACCCGCAAGTTTCCTCGCCAAATNTGGCCAAAGGAGAACCCTGGACTGGNTGGCATTGCTTCAGCAACCTGGGCTTCCCCCGTTNACAAGCTGCCGCCTCANTCCAACCTAGAAACTCCCCACAAAAAAGGGGAGGAGCTCCAAGAAGGGCGAGGGTGCCGACCGGCAACGAGGAAGACGACCCACTGCCGCCAGCTCCCTTTGCACTACCATCTAGGCCTGCGCCGACGCCGGAAACGCTGCCGCTCCGTCTCCGGCGCCACCTTTGTCCAGCCTCCTTGCCTCACCTAGCCACGCATAGGCCACCACGGCGACGAGGGAGCTCAGCCGCATTGCTCAGCGCTGGTGATAGCCACCCCGCACACGCCTGGCCGTACGCGTGCTGCCGGCCGCCGCAGCGCCTCCACCACGGTGCTGGCCTCCGCAGCCGCCAGCCTCCGCCGTCGCCGGCCAGCCACCTCCGCACGAGCTCCGCCGCTGCACAGCGGAAGCCACCTCCGCGCGCCTCCGTCGGCCGCCGTCGCCGCGAGCTGCCACCACCTCCCCTCGCCGGCCGCAGCCGACGCGCTGCCCGCCTCCACTGGCAGCCGGACGCAGAGCACCGTCATCGGCCACATCCGCGCCCGGGGGGGTCGGATCCGTCTCCGGCGTGCCCGGATCCGTCGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTCGACGCTGCTCCGCCTCCAACGCCGAGGAAGGGCTCCCCGAGGATGTTCTCCCCGCCGCCGCCTTCCCGGCCGGCCGCGCGGTTTCCGGCGGCTGGCTCCGGCGGCGGCGAGGCGGCTAGAGGCCGGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCTCCCCCGAGCCGCCCGCGTGAGGGCGACGTGAGGGTCACCATCGATCATCATCACACAACTTTAGTACCATATATGTGCTGAATGAAAGCAGGATAGAAATAAATTGGCATTTTTGTTATCAACATAGCTATTGTTAGGTTCCTTGAATACTGAAAGTTCATACTTTGATCTTCAGATAATGGTGAGTAATTTCTTCTGAATGCTCTTCAATTACAAAATAAAAAATTAAGTTACTCTGATACTCAAATTTTTACATGGTTACTTTTTTCTTTGTTGTGCATTGTGAACCCCTGTTAGTAACTTATAACCATTGAAATATCTTATACAAATGGTAGTCAGTGAGCAAGTCAGTCAAAAAATAATCTCCATATATGTTCCAGCAAATACTTGGGCTGCCCAAGTCCGTTAGTTCTTGTCCCTTGCACATGTTCACACTAGTCCAAGATGTGAATCCGATCTTGTACTTTGGTTTTCTCTTCCCTCGTTTCACAGACTAGTACCACGGCCACCAAGAAAATAGTGGAAAGCAGAA]

[+] EMBL C27299               [CTCTGCNACCCGCAAGTTTCCTCGCCAAATNTGGCCAAAGGAGAACCCTGGACTGGNTGGCATTGCTTCAGCAACCTGGGCTTCCCCCGTTNACAAGCTGCCGCCTCANTCCAACCTAGAAACTCCCCACAAAAAAGGGGAGGAGCTCTAAGAAGGGCGAGGGTGCCGACCGGCAACGAGGAAGACGACCCACTGCCGCCAGCTCCCTTTGCACTACCATCTAGGCCTGCNCCGACGCCGGAAACGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB619979             [                                            ACCCTGGACTGGGTGGCATTGCTTCAGCAACCTGGGCTTCCCCCGTTGACAAGCTGCCGCCTCAATCTAACCTAGAAACTCCCCACAAAGAAGGGGAGGAGCTCCAAGAAGGGCGAGGGTGCCGACCGGCAACGAGGAAGACGACCCACTGCCGCCAGCTCCCTTTGCACTACCATCTAGGCCTGCGCCGACGCCGGAAACGCTGCCGCTCAGTCTCCGGCGCCACCTTTGTCCAGCCTCCTTGCCTCACCTAGCCACGCATAGGCCACCACGGCGACGAGGGAGCTCAGCCGCATTGCTCAGCGCTGGTGATAGCCACCCCGCACACGCCTGGCCGTACGCGTGCTGCCGGCCGCCGCAGCGCCTCCACCACGGTGCTGGCCTCCGCAGCCGCCAGCCTCCGCCGTCGCAGGACAGCCACCTCCGCACGAGCTCCGCCGCTGCACAGCGGAAGCCACCTCCGCGCGCCTCCGTCGGCCGCCGTCGCCGCGAGCTGCCACCACCTCCCCTCGCCGGCCGCAGCCGACGCGCTGCCCGCCTCCACTGGCAGCCGGACGCAGAGCACCGTCATCGGCCACATCCGCGCCCGGGGGGGTCGGATCCGTCTCCGGCGTGCCCGGATCCGTCGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTCGACGCTGCTCCGCCTCCAACGCCGAGGAAAAGCTCCCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB683422             [                                                                                                                                       AGGGCATGAGCTCCAAGAAGGGCGAGGGTGCCGACCGGCAACGAGGAAGACGACCCACTGCCGCCAGCTCCCTTTGCACTACCATCTAGGCCTGCGCCGACGCCGGAAACGCTGCCGCTCCGTCTCCGGCGCCACCTTTGTCCAGCCTCCTTGCCTCACCTAGCCACGCATAGGCCACCACGGCGACGAGGGAGCTCAGCCGCATTGCTCAGCGCTGGTGATAGCCACCCCGCACACGCCTGGCCGTACGCGTGCTGCCGGCCGCCGCAGCGCCTCCACCACGGTGCTGGCCTCCGCAGCCGCCAGCCTCCGCCGTCGCCGGCCAGCCACCTCCGCACGAGCTCCGCCGCTGCACAGCGGAAGCCACCTCCGCGCGCCTCCGTCGGCCGCCGTCGCCGCGAGCTGCCACCACCTCCCCTCGCCGGCCGCAGCCGACGCGCTGCCCGCCTCCACTGGCAGCCGGACGCAGAGCACCGTCATCGGCCACATCCGCGCCCGGGGGGGTCGGATCCGTCTCCGGCGTGCCCGGATCCGGAGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTCGACGCTGCTCCGCCTCCAACGCCGAGGAAGGGCTCCCCGAGGATGTTCTCCCCGCCGCCGCCTTCCCGGCCGGCCGCGCGGTTTCCGGCGGCTGGCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK107971             [                                                                                                                                                                                                                           TCTAGGCCTGCGCCGACGCCGGAAACGCTGCCGCTCCGTCTCCGGCGCCACCTTTGTCCAGCCTCCTTGCCTCACCTAGCCACGCATAGGCCACCACGGCGACGAGGGAGCTCAGCCGCATTGCTCAGCGCTGGTGATAGCCACCCCGCACACGCCTGGCCGTACGCGTGCTGCCGGCCGCCGCAGCGCCTCCACCACGGTGCTGGCCTCCGCAGCCGCCAGCCTCCGCCGTCGCCGGCCAGCCACCTCCGCACGAGCTCCGCCGCTGCACAGCGGAAGCCACCTCCGCGCGCCTCCGTCGGCCGCCGTCG CGCGAGCTGCCACCACCTCCCCTCGCCGGCCGCAGCCGACGCGCTGCCCGCCTCCACTGGCAGCCGGACGCAGAGCACCGTCATCGGCCACATCCGCGCCCGGGGGGGTCGGATCCGTCTCCGGCGTGCCCGGATCCGTCGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTCGACGCTGCTCCGCCTCCAACGCCGAGGAAGGGCTCCCCGAGGATGTTCTCCCCGCCGCCGCCTTCCCGGCCGGCCGCGCGGTTTCCGGCGGCTGGCTCCGGCGGCGGCGAGGCGGCTAGAGGCCGGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCTCCCCCGAGCCGCCCGCGTGAGGGCGACGTGAGGGTCACCATCGATCATCATCACACAACTTTAGTACCATATATGTGCTGAATGAAAGCAGGATAGAAATAAATTGGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL AU173282             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGTCGGATCCGTCTCCGGCGTGCCCGGATCCGTCGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTCGACGCTGCTCCGCCTCCAACGCCGAGGAAGGGCTCCCCGAGGATGTTCTCCCCGCCGCCGCCTTCCCGGCCGGCCGCGCGGTTTCCGGCGGCTGGCTCCGGCGGCGGCAAGGCGGCTAGAGGCCGGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCTCCCCCTAGTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA757953             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GCGTGCCCGGATCCGTCGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTCGACGCTGCTCCGCCTCCAACGCCGAGGAAGGGCTCCCCGAGGATGTTCTCCCCGCCTCCGCCTTCCCGGCCGGCCGCGCGGTTTCTGGCGGCTGGCTCCGGCGGCGGCGAGGCGGCTAGAGGCCGGCGAGGTGGCAGCGCGGGCGGCTAGGGTTTTCTCCCCCGAGCCGCCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF303079             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTTTCTCCCCCGAGCCGCCCGCGTGAGGGCGACGTGAGGGTCACCATCGATCATCATCACACAACTTTAGTACCATATATGTGCTGAATGAAAGCAGGATAGAAATAAATTGGCATTTTTGTTATCAACATAGCTATTGTTAGGTTCCTTGAATACTGAAAGTTCATACTTTGATCTTCAGATAATGGTGAGTAATTTCTTCTGAATGCTCTTCAATTACAAAATAAAAAATTAAGTTACTCTGATACTCAAATTTTTACATGGTTACTTTTTTCTTTGTTGTGCATTGTGAACCCCTGTTAGTAACTTATAACCATTGAAATATCTTATACAAATGGTAGTCAGTGAGCAAGTCAGTCAAAAAATAATCTCCATATATGTTCCAGCAAATACTTGGGCTGCCCAAGTCCGTTAGTTCTTGTCCCTTGCACATGTTCACACTAGTCCAAGATGTGAATCCGATCTTGTACTTTGGTTTTCTCTTCCCTCGTTTCACAGACTAGTACCACGGCCACCAAGAAAATAGTGGAAAGCAGAA]


>consensus_13129#0 CTCTGCNACCCGCAAGTTTCCTCGCCAAATNTGGCCAAAGGAGAACCCTGGACTGGNTGG CATTGCTTCAGCAACCTGGGCTTCCCCCGTTNACAAGCTGCCGCCTCANTCCAACCTAGA AACTCCCCACAAAAAAGGGGAGGAGCTCCAAGAAGGGCGAGGGTGCCGACCGGCAACGAG GAAGACGACCCACTGCCGCCAGCTCCCTTTGCACTACCATCTAGGCCTGCGCCGACGCCG GAAACGCTGCCGCTCCGTCTCCGGCGCCACCTTTGTCCAGCCTCCTTGCCTCACCTAGCC ACGCATAGGCCACCACGGCGACGAGGGAGCTCAGCCGCATTGCTCAGCGCTGGTGATAGC CACCCCGCACACGCCTGGCCGTACGCGTGCTGCCGGCCGCCGCAGCGCCTCCACCACGGT GCTGGCCTCCGCAGCCGCCAGCCTCCGCCGTCGCCGGCCAGCCACCTCCGCACGAGCTCC GCCGCTGCACAGCGGAAGCCACCTCCGCGCGCCTCCGTCGGCCGCCGTCGCCGCGAGCTG CCACCACCTCCCCTCGCCGGCCGCAGCCGACGCGCTGCCCGCCTCCACTGGCAGCCGGAC GCAGAGCACCGTCATCGGCCACATCCGCGCCCGGGGGGGTCGGATCCGTCTCCGGCGTGC CCGGATCCGTCGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTCGAC GCTGCTCCGCCTCCAACGCCGAGGAAGGGCTCCCCGAGGATGTTCTCCCCGCCGCCGCCT TCCCGGCCGGCCGCGCGGTTTCCGGCGGCTGGCTCCGGCGGCGGCGAGGCGGCTAGAGGC CGGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCTCCCCCGAGCCGCCCGCGTGAGGGCG ACGTGAGGGTCACCATCGATCATCATCACACAACTTTAGTACCATATATGTGCTGAATGA AAGCAGGATAGAAATAAATTGGCATTTTTGTTATCAACATAGCTATTGTTAGGTTCCTTG AATACTGAAAGTTCATACTTTGATCTTCAGATAATGGTGAGTAATTTCTTCTGAATGCTC TTCAATTACAAAATAAAAAATTAAGTTACTCTGATACTCAAATTTTTACATGGTTACTTT TTTCTTTGTTGTGCATTGTGAACCCCTGTTAGTAACTTATAACCATTGAAATATCTTATA CAAATGGTAGTCAGTGAGCAAGTCAGTCAAAAAATAATCTCCATATATGTTCCAGCAAAT ACTTGGGCTGCCCAAGTCCGTTAGTTCTTGTCCCTTGCACATGTTCACACTAGTCCAAGA TGTGAATCCGATCTTGTACTTTGGTTTTCTCTTCCCTCGTTTCACAGACTAGTACCACGG CCACCAAGAAAATAGTGGAAAGCAGAA



consensusID : consensus_13129#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 858
fasta sequence
                              [AAGAAAGGGAGGAGCTCCATGAAGGCCGAGGGTGCCGACCGGCAACGAGGAAGACGACCCACCGCCGCCAGCTCCCTTTGCACTGCCATCTGGCCGCCGGTGGTGCTGCTGCTCCGGACCGGCACCACCCGCCGGCGCCCCCGAAGTCCGGCCGCCGCGCCTCACCTGGCCACCGCGGCGGCATCCCGGCTGCCCGGCCACCAAGCTGAGCCGCCACCGAGGCCTGGACGACCCACCGCGCCATGGGCTGGCGCCGAGCGGCCAGGCCGAGCGAGTGAGCGGGGGCGCCGCTGCCGCTCCGGGCAGGCTGCGCTGCCCGCCGCCTCCGCGACCGGGCCGGCCACGACGAGCCGCAGCCATCCGCCGCGCGCGCCCGCCGCTGACGAGCCGCCTCCGCGCGCCTCCACGCCGAGCCTCAGCCGTCCACCGCCTCCGCGCCCGTGCTGGGCCGGCC-TAGCCGTAGCCGGCCGCCACCTCGCCGCCTTGCCGCTGGCCGCCATCACGACCGCATGCCGTCGCGCCGCCCCAGGCCTCCTCGCGCCGCCGCCGCGCAGATCCAGGCAAGGGAGGGCCGGATCCGGCCATGGGGGCTCCGAATCCGCTGTCTCCTCCCCACCTCGCCGCCGTAGCTGCCACGGACCACGCCGGTGGAGAGCTTCGTCGTCTTCGTCCTTCGCGCCGAGGAGGGAGACGCTACGAAGAGAAGAAGGCCTCGCTACCGCCTTCCCTGCCCG-C-TGC--GCTTCGCCGCCGGCGGGCTCCAGCGACAGCGAGGTGGGGGGAGGGAGGGAGAGAAGGCGCGGGCGGCTAGGGTTTTTCGCCCCCGAGCCACCCGACGCGAAAGCGACGCGGGGGGCTTTT]

[-] EMBL CB656398             [AAGAAAGGGAGGAGCTCCATGAAGGCCGAGGGTGCCGACCGGCAACGAGGAAGACGACCCACCGCCGCCAGCTCCCTTTGCACTGCCATCTGGCCGCCGGTGGTGCTGCTGCTCCGGACCGGCACCACCCGCCGGCGCCCCCGAAGTCCGGCCGCCGCGCCTCACCTGGCCACCGCGGCGGCATCCCGGCTGCCCGGCCACCAAGCTGAGCCGCCACCGAGGCCTGGACGACCCACCGCGCCATGGGCTGGCGCCGAGCGGCCAGGCCGAGCGAGTGAGCGGGGGCGCCGCTGCCGCTCCGGGCAGGCTGCGCTGCCCGCCGCCTCCGCGACCGGGCCGGCCACGACGAGCCGCAGCCATCCGCCGCGCGCGCCCGCCGCTGACGAGCCGCCTCCGCGCGCCTCCACGCCGAGCCTCAGCCGTCCACCGCCTCCGCGCCCGTGCTGGGCCGGCC TAGCCGTAGCCGGCCGCCACCTCGCCGCCTTGCCGCTGGCCGCCATCACGACCGCATGCCGTCGCGCCGCCCCAGGCCTCCTCGCGCCGCCGCCGCGCAGATCC                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB676581             [                                                                                                                                                           CGCGCCTCACCTGGCCACCGCGGCGGCATCCCGGCTGCCCGGCCACCAAGCTGAGCCGCCACCGAGGCCTGGACGACCCACCGCGCCATGGGCTGGCGCCGAGCGGCCAGGCCGAGCGAGTGAGCGGGGGCGCCGCTGCCGCTCCGGGCAGGCTGCGCTGCCCGCCGCCTCCGCGACCGGGCCGGCCACGACGAGCCGCAGCCATCCGCCGCGCGCGCCCGCCGCTGACGAGCCGCCTCCGCGCGCCTCCACGCCGAGCCTCAGCCGTCCACCGCCTCCGCGCCCGTGCTGGGCCGGCC TAGCCGTAGCCGGCCGCCACCTCGCCGCCTTGCCGCTGGCCGCCATCACGACCGCATGCCGTCGCGCCGCCCCAGGCCTCCTCGCGCCGCCGCCGCGCAGATCCAGGCAAGGGAGGGCCGGATCCGGCCATGGGGGCTCCGAATCCGCTGTCTCCTCCCCACCTCGCCGCCGTAGCTGCCACGGACCACGCCGGTGGAGAGCTTCGTCGTCTTCGTCCTTCGCGCCGAGGAGGGAGACGCTACGAAGAGAAGAAGGCCTCGCTACCGCCTTCCCTGCCCG C TGCCGGCTTCGCCGCCGGCGGGCTCCAGCGACAGCGAGGTGGGGGGAGGGAGGGAGAGAAGGCGCGGGCGGCTAGGGTTTT                                            ]
[-] EMBL C72504               [                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTGGG CGGCCTTAACCTTA NCGGCCGCAACCTCGCCGCCTTTGCGNTGGCCGCCATCACGACCGCATTCCGTCGCGCCGCCCNAGGCCTCCTCGCGCCGCCGCCGCGNAGATCCAGGCAAGGGA GGCCGGATCCGGCCATGGGGGCTCCGAATCCGCTGTCTCCTCCCCACCTCGCCGCCGTAGCTGCCACGGACCACGCCGGTGGAGAGCTTCGTCGTCTTCGTCCTTCGCGCCGAGGAGGGAGACGCTACGAAGAGAAGAAGGCCTC CTACCGCCTTCCCTGCCCGCC TGC  GCTTC CCGCCGGCGGGCTCCAGCGACAGCGAGGTGGGGGGAGGGAGGGAGAGAAGGCGCGGGCGGCTAGGGTTTTTCGCCCCCGAGCCACCCGACGCGAAAGCGACGCGGGGGG     ]
[-] EMBL AU069667             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCCGCGCAGATCCAGGCAAGGGAGGGCCGAATCCGGCCAT GGGGCTCCGAATCCGCTGTCTCCTCCCCACCTCGCCGCCGTAGCTGCCACGGACCACGCCGGTGGAGAGCTTCGTCGTCTTCGTCCTTCGCGCCGAGGAGGGAGACGCTACGAAGAGAAGAAGGCCTCG TACCGCCTTCCCTGCCCG CATGC  NNTT NCCGCCGGCGGGCTCCAGCGACAGCGAGGTGGGGGGAGGGAGGGAGAGAAGGCGCGGGCGGCTAGGGTTTTTCGCCCCCGAGCCACCCGACGCGAAAGCGACGCGGGGGGCTTTT]


>consensus_13129#1 AAGAAAGGGAGGAGCTCCATGAAGGCCGAGGGTGCCGACCGGCAACGAGGAAGACGACCC ACCGCCGCCAGCTCCCTTTGCACTGCCATCTGGCCGCCGGTGGTGCTGCTGCTCCGGACC GGCACCACCCGCCGGCGCCCCCGAAGTCCGGCCGCCGCGCCTCACCTGGCCACCGCGGCG GCATCCCGGCTGCCCGGCCACCAAGCTGAGCCGCCACCGAGGCCTGGACGACCCACCGCG CCATGGGCTGGCGCCGAGCGGCCAGGCCGAGCGAGTGAGCGGGGGCGCCGCTGCCGCTCC GGGCAGGCTGCGCTGCCCGCCGCCTCCGCGACCGGGCCGGCCACGACGAGCCGCAGCCAT CCGCCGCGCGCGCCCGCCGCTGACGAGCCGCCTCCGCGCGCCTCCACGCCGAGCCTCAGC CGTCCACCGCCTCCGCGCCCGTGCTGGGCCGGCCTAGCCGTAGCCGGCCGCCACCTCGCC GCCTTGCCGCTGGCCGCCATCACGACCGCATGCCGTCGCGCCGCCCCAGGCCTCCTCGCG CCGCCGCCGCGCAGATCCAGGCAAGGGAGGGCCGGATCCGGCCATGGGGGCTCCGAATCC GCTGTCTCCTCCCCACCTCGCCGCCGTAGCTGCCACGGACCACGCCGGTGGAGAGCTTCG TCGTCTTCGTCCTTCGCGCCGAGGAGGGAGACGCTACGAAGAGAAGAAGGCCTCGCTACC GCCTTCCCTGCCCGCTGCGCTTCGCCGCCGGCGGGCTCCAGCGACAGCGAGGTGGGGGGA GGGAGGGAGAGAAGGCGCGGGCGGCTAGGGTTTTTCGCCCCCGAGCCACCCGACGCGAAA GCGACGCGGGGGGCTTTT



consensusID : consensus_13129#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence
                              [CCGGATCCGTTGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTCGACGCTNTCCGCCTCCAANGCCGAGGAAGGGCTNCCCGAGGATGTTCTNCCCGCCGCCGCCTTTCCGGCNGGCCGCNCGGTTTCCGGCGGCTGGCTCCGGCGGCNGNAANGCGGCTAGANGCCGGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCTCCCCCTAGTNGCCCGCNTGAGGGCGAAGCGAGGGTCACGCAACGGGTAGACCCTCTATGCCTAGCCCTCTCTCTTGCTCAACCTGAACATACT]

[-] EMBL C71981               [CCGGATCCGTTGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTCGACGCTNTCCGCCTCCAANGCCGAGGAAGGGCTNCCCGAGGATGTTCTNCCCGCCGCCGCCTTTCCGGCNGGCCGCNCGGTTTCCGGCGGCTGGCTCCGGCGGCNGNAANGCGGCTAGANGCCGGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCTCCCCCTAGTNGCCCGCNTGAGGGCGAAGCGAGGGTCACGCAACGGGTAGACCCTCTATGCCTAGCCCTCTCTCTTGCTCAACCTGAACATACT]


>consensus_13129#2 CCGGATCCGTTGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTCGAC GCTNTCCGCCTCCAANGCCGAGGAAGGGCTNCCCGAGGATGTTCTNCCCGCCGCCGCCTT TCCGGCNGGCCGCNCGGTTTCCGGCGGCTGGCTCCGGCGGCNGNAANGCGGCTAGANGCC GGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCTCCCCCTAGTNGCCCGCNTGAGGGCGA AGCGAGGGTCACGCAACGGGTAGACCCTCTATGCCTAGCCCTCTCTCTTGCTCAACCTGA ACATACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13129#0      CTCTGCNACCCGCAAGTTTCCTCGCCAAATNTGGCCAAAGGAGAACCCTGGACTGGNTGG 60
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      ------------------------------------------------------------
                                                                                   

consensus_13129#0      CATTGCTTCAGCAACCTGGGCTTCCCCCGTTNACAAGCTGCCGCCTCANTCCAACCTAGA 120
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      ------AAGAAAGGGAGGAGCTCCATGAAGGCCGAGGGTGCCGACCGGCAACGAGGAAGA 54
                                                                                   

consensus_13129#0      -AACTCCCCACAAAAAAGGGGAGGAGCTCCAAGAAGGGCGAGGGTGCCGACCGGCAACGA 179
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      CGACCCACCGCCGCCAGCTCCCTTTGCACTGCCATCTGGCCGCCGGTGGTGCTGCTGCTC 114
                                                                                   

consensus_13129#0      GGAAGACGACCCACTGCCGCCAGCTCCCTTTGCACTACCATCTAGGCCTGCGCCGACGCC 239
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      CGGACCGGCACCACCCGCCGGCGCCCCCGAAGTCCGGCCGCCGCGCCTCACCTGGCCACC 174
                                                                                   

consensus_13129#0      GGAAACGCTGCCGCTCCGTCTCCGGCGCCACCTTTGTCCAGCCTCCTTGCCTCACCTAGC 299
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      GCGGCGGCATCCCGGCTGCC--CGGCCACCAAGCTGAGCCGCCACCGAGGCCTGGACGAC 232
                                                                                   

consensus_13129#0      CACGCATAGGCCACCACGGCGACGAGGGAGCTCAGCCGCATTGCTCAGCGCTGGTGATAG 359
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      CCACCGCGCCATGGGCTGGCGCCGAGCG-GCCAGGCCGAGCGAGTGAGCGGGGGCGCCGC 291
                                                                                   

consensus_13129#0      CCACCCCGCACACGCCTGGCCGTACGCGTGCTGCCGGCCGCCGCAGCGCCTCCACCACGG 419
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      TGCCGCTCCGGGCAGGCTGCGCTGCCCGCCGCCTCCGCGACCGGGCCGGCCACGACGAGC 351
                                                                                   

consensus_13129#0      TGCTGGCCTCCGCAGCCGCCAGCCTCCGCCGTCGCCGGCCAGCCACCTCCGCACGAGCTC 479
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      CGCAGCCATCCGCCGCGCGCGCCCGCCGCTGACG--AGCCGCCTCCGCGCGCCTCCACGC 409
                                                                                   

consensus_13129#0      CGCCGCTGCACAGCGGAAGCCACCTCCGCGCGCCTCCGTCGGCCGCCGTCGCCGCGAGCT 539
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      CGAGCCTCAGCCGTCCACCGCCTCCGCGCCCGTGCTGGGCCGGCCTAGCCGTAGCCGGCC 469
                                                                                   

consensus_13129#0      GCCACCACCTCCCCTCGCCGGCCGCAGCCGACGCG-CTGCCCGCCTCCAC-TGGCAGCCG 597
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      GCCACCTCGCCGCCTTGCCGCTGGCCGCCATCACGACCGCATGCCGTCGCGCCGCCCCAG 529
                                                                                   

consensus_13129#0      GACGCAGAGCACCGTCATCGGCCACATCCGCGCCCGGGGGGGTCGGATCCGTCTCCGGCG 657
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      GCCTCCTCGCGCCGCCGCCGCGCAGATCCAGGCAAGGGAGGGCCGGATCCGGCCATGGGG 589
                                                                                   

consensus_13129#0      TGCCCGGATCCGTCGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTC 717
consensus_13129#2      ---CCGGATCCGTTGCAGCCACCTCCATCGACCGCCGCCTCCGTCGACCACCGCCCCGTC 57
consensus_13129#1      GCTCCGAATCCGCTGTCTCCTCCCCACCTCGCCGCCGTAGCTGCCACGGACCACGCCGGT 649
                          *** *****  *   ** ** *      ******   * * *    *** * ***  

consensus_13129#0      GA-------CGCTGC-TCCGCCTCCAACGCCGAGGAAGG----GCTCCCCGAGGATGTTC 765
consensus_13129#2      GA-------CGCTN--TCCGCCTCCAANGCCGAGGAAGG----GCTNCCCGAGGATGTTC 104
consensus_13129#1      GGAGAGCTTCGTCGTCTTCGTCCTTCGCGCCGAGGAGGGAGACGCTACGAAGAGAAGAAG 709
                       *        **     * ** *      ******** **    *** *     ** *   

consensus_13129#0      TCCCCGCCGCCGCCTTCCCGGCCGGCCGCGCGGTTTCCGGCGGCTGGCTCCGGCGGCGGC 825
consensus_13129#2      TNCCCGCCGCCGCCTTTCCGGCNGGCCGCNCGGTTTCCGGCGGCTGGCTCCGGCGGCNGN 164
consensus_13129#1      GCCTCGCTACCGCCTTCCCTGCCCGCTGCGCT-TCGCCGCCGGCGGGCTCCAGCGACAGC 768
                         * ***  ******* ** **  ** ** *  *  *** **** ****** *** * * 

consensus_13129#0      GAGGCGGCTAGAGGCCGGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCT-CCCCCGAGC 884
consensus_13129#2      AANGCGGCTAGANGCCGGCGAGGTGGCGGCGCGGGCGGCTAGGGTTTTCT-CCCCCTAGT 223
consensus_13129#1      GAGGTGGGGGGAGG--GAGGGAGAGAAGGCGCGGGCGGCTAGGGTTTTTCGCCCCCGAGC 826
                        * * **   ** *  *  *  * *  *********************   ***** ** 

consensus_13129#0      CGCCCG-CGTGAGGGCGACGTGAGGGTCAC-CATCGATCATCATCACACAACTTTAGTAC 942
consensus_13129#2      NGCCCG-CNTGAGGGCGAAGCGAGGGTCACGCAACGGGTAG-ACCCTCTATGCCTAGCCC 281
consensus_13129#1      CACCCGACGCGAAAGCGACGCGGGGGGCTTTT---------------------------- 858
                         **** *  **  **** * * *** *                                

consensus_13129#0      CATATATGTGCTGAATGAAAGCAGGATAGAAATAAATTGGCATTTTTGTTATCAACATAG 1002
consensus_13129#2      TCTCTCT-TGCTCAACCTGAACATACT--------------------------------- 307
consensus_13129#1      ------------------------------------------------------------
                                                                                   

consensus_13129#0      CTATTGTTAGGTTCCTTGAATACTGAAAGTTCATACTTTGATCTTCAGATAATGGTGAGT 1062
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      ------------------------------------------------------------
                                                                                   

consensus_13129#0      AATTTCTTCTGAATGCTCTTCAATTACAAAATAAAAAATTAAGTTACTCTGATACTCAAA 1122
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      ------------------------------------------------------------
                                                                                   

consensus_13129#0      TTTTTACATGGTTACTTTTTTCTTTGTTGTGCATTGTGAACCCCTGTTAGTAACTTATAA 1182
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      ------------------------------------------------------------
                                                                                   

consensus_13129#0      CCATTGAAATATCTTATACAAATGGTAGTCAGTGAGCAAGTCAGTCAAAAAATAATCTCC 1242
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      ------------------------------------------------------------
                                                                                   

consensus_13129#0      ATATATGTTCCAGCAAATACTTGGGCTGCCCAAGTCCGTTAGTTCTTGTCCCTTGCACAT 1302
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      ------------------------------------------------------------
                                                                                   

consensus_13129#0      GTTCACACTAGTCCAAGATGTGAATCCGATCTTGTACTTTGGTTTTCTCTTCCCTCGTTT 1362
consensus_13129#2      ------------------------------------------------------------
consensus_13129#1      ------------------------------------------------------------
                                                                                   

consensus_13129#0      CACAGACTAGTACCACGGCCACCAAGAAAATAGTGGAAAGCAGAA 1407
consensus_13129#2      ---------------------------------------------
consensus_13129#1      ---------------------------------------------
                                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)