cluster # 13133

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Oryza sativa
cluster # 13133 cluster # 13133 Sequences # 12 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13133#0 length = 1751 sequences # 9

consensus_13133#1 length = 548 sequences # 2
consensus_13133#2 length = 129 sequences # 1

consensusID : consensus_13133#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1751
fasta sequence

                              [GTTAAAAAGGAGCACACACACAACTCTTGCAAATGTCAGGGGGAGGAGGAGCTTTTCCTCTCCTCCATACTATCTTCTGTTGGAGAACAGCAGCAAGCAGAAAAGGGACCAGGGAATCAAAGGCTTCCTGTATAGATCTTTGGAGGAAAGATCCTTTCTTTCTGCAGGAATTCAGGGCATTGCTGGTGTCCTCTTCAGTTGTGCTAAATCTGTGACGAGTATGCGCCGCGTCCGGGTCTCATCCCACCAATCTCCAGTCCACAAGCTTGGTGATTCACAGATGAAATTGACACCCAAATTCCGGCTTGCCACAACCTCCGCATTGCCGTCGTCGATGCCGGCCTCTGATTTGGAGCAAGCCTCATGGGAGACACCCCTCATACCTGGCCTTCCTGATGATGCTGCTCTCAACTGTCTCCTCCGGCTACCTGTTGAGACCCATGAGGCATGCAGGCTTGTGTGTCGCCGGTGGCATCACCTCCTAGCTGACAAGGCGCGGTTCTTCATGCAGAGGAAGGTGATGGGTTTTCGGTCACCGTTGTTGTTCACCCTGGCTTTCCACCGTTGCACTGGTAAGATACAGTGGAAGGTGCTGGACCTGAACTACTTGACCTGGCATACAATTCCTGCCATGCCGTGTCGGGATCGGGCTTGCCCCCGAGGTTTCGGTTGCGTTGCTATCCCCAGTGACGGCACCCTCCTTGTTTGCGGCGGGTTGGTCTCGGACATGGATTGCCCATTGCACTTGGTCCTTAAGTATGATGTTTATAAGAACCGATGGACCGTGATGACTCGAATGCTTGCTGCACGGTCTTTCTTTGCGGGTGGCGTCATTGATGGACGGGTTTATGTAGCTGGAGGTTATAGTACTGACCAGTTTGAGCTCAATTCAGCAGAGGTTCTTGATCCGGTTAAGGGTGTGTGGCAACCAGTTGCTAGTATGGGCATGAACATGGCATCCTCGGATTCTGCTGTCATCAGTGGTAGGCTTTATGTCACTGAAGGCTGTGCATGGCCTTTCTTC-TCCTCGCCGAGAGGTCAGGTTTA-TGATCCAAAGA-TTGACCG-CTGGGA-GGTTATGCCAGTTGGAATGCGTGAAGGGTGGACCGGTTTAAGTGTTGTCATCGACAAACATTTGTTCGTCA-TTTCAGAATATGAGAGGATGAAGGTTAAAGTCTACGATCCAGAAACGGACTCATGGGACTCTGTAAAAGGCCCTCCTATGCCTGAACGAATTATGAAGCCATTTTCGGTGAGTTGTTTGGAGAATAAGATTGTTGTTGTTGGCCGAGGCCTCCATGTAGCTATTGGCCATGTCAAGAAGCAACCTGGCAGCCATCCTGATAGTAGGAGCTCAAGCTACTTAATTCAGTGGCAAGATGTGGATGTTCCTAGGGAATTTGGTGATCTGACACCTTCAAACAGTCAGATTTTGTATGCTTAACTGCTGAAAATGCCGGATCTGCAGAGAGGCCATTGTTGTTCTTTCATTTTATTTGGCCAACTGGGTAAAGCCCTATTCTGAGCTGTAAAATTGTTCTCCTCTGTATGTT-AGTCTCTTTCCCAGTTAATTTTACAGCCTGTAAGTGTTATGTCAGTAAATAAAT-A-AAAAAATTCAAGAGATTGTTGTAAGTAGAAGTTTGCCGGTACTTGAGACAATTTGTTGTATTTGCTCTTTAAACTGATTTTGACTTCTTGGTCAGTTCAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTGCGTAGCGTATCGTTG]

[+] EMBL AK069618             [GTTAAAAAGGAGCACACACACAACTCTTGCAAATGTCAGGGGGAGGAGGAGCTTTTCCTCTCCTCCATACTATCTTCTGTTGGAGAACAGCAGCAAGCAGAAAAGGGACCAGGGAATCAAAGGCTTCCTGTATAGATCTTTGGAGGAAAGATCCTTTCTTTCTGCAGGAATTCAGGGCATTGCTGGTGTCCTCTTCAGTTGTGCTAAATCTGTGACGAGTATGCGCCGCGTCCGGGTCTCATCCCACCAATCTCCAGTCCACAAGCTTGGTGATTCACAGATGAAATTGACACCCAAATTCCGGCTTGCCACAACCTCCGCATTGCCGTCGTCGATGCCGGCCTCTGATTTGGAGCAAGCCTCATGGGAGACACCCCTCATACCTGGCCTTCCTGATGATGCTGCTCTCAACTGTCTCCTCCGGCTACCTGTTGAGACCCATGAGGCATGCAGGCTTGTGTGTCGCCGGTGGCATCACCTCCTAGCTGACAAGGCGCGGTTCTTCATGCAGAGGAAGGTGATGGGTTTTCGGTCACCGTTGTTGTTCACCCTGGCTTTCCACCGTTGCACTGGTAAGATACAGTGGAAGGTGCTGGACCTGAACTACTTGACCTGGCATACAATTCCTGCCATGCCGTGTCGGGATCGGGCTTGCCCCCGAGGTTTCGGTTGCGTTGCTATCCCCAGTGACGGCACCCTCCTTGTTTGCGGCGGGTTGGTCTCGGACATGGATTGCCCATTGCACTTGGTCCTTAAGTATGATGTTTATAAGAACCGATGGACCGTGATGACTCGAATGCTTGCTGCACGGTCTTTCTTTGCGGGTGGCGTCATTGATGGACGGGTTTATGTAGCTGGAGGTTATAGTACTGACCAGTTTGAGCTCAATTCAGCAGAGGTTCTTGATCCGGTTAAGGGTGTGTGGCAACCAGTTGCTAGTATGGGCATGAACATGGCATCCTCGGATTCTGCTGTCATCAGTGGTAGGCTTTATGTCACTGAAGGCTGTGCATGGCCTTTCTTC TCCTCGCCGAGAGGTCAGG TTA TGATCCAAAGA TTGACCG CTGGGA GGTTATGCCAGTTGGAATGCGTGAAGGGTGGACCGGTTTAAGTGTTGTCATCGACAAACATTTGTTCGTCA TTTCAGAATATGAGAGGATGAAGGTTAAAGTCTACGATCCAGAAACGGACTCATGGGACTCTGTAAAAGGCCCTCCTATGCCTGAACGAATTATGAAGCCATTTTCGGTGAGTTGTTTGGAGAATAAGATTGTTGTTGTTGGCCGAGGCCTCCATGTAGCTATTGGCCATGTCAAGAAGCAACCTGGCAGCCATCCTGATAGTAGGAGCTCAAGCTACTTAATTCAGTGGCAAGATGTGTGTGTTCCTAGGGAATTTGGTGATCTGACACCTTCAAACAGTCAGATTTTGTATGCTTAACTGCTGAAAATGCCGGATCTGCAGAGAGGCCATTGTTGTTCTTTCATTTTATTTGGCCAACTGGGTAAAGCCCTATTCTGAGCTGTAAAATTGTTCTCCTCTGTATGTT AGTCTCTTTCCCAGTTAATTTTACAGCCTGTAAGTGTTATGTCAGTAAATAAAT A AAAAAATTCAAGAGATTGTTGTAAGTAGAAGTTTGCCGGTACTTGAGACAATTTGTTGTATTTGCTCTTTAAACTGATTTTG                                                                ]
[+] EMBL CB675765             [                                                        CCTCTCCTCCATACTATCTTCTGTTGGAGAACAGCAGCAAGCAGAAAAGGGACCAGGGAATCAAAGGCTTCCTGTATAGATCTTTGGAGGAAAGATCCTTTCTTTCTGCAGGAATTCAGGGCATTGCTGGTGTCCTCTTCAGTTGTGCTAAATCTGTGACGAGTATGCGCCGCGTCCGGGTCTCATCCCACCAATCTCCAGTCCACAAGCTTGGTGATTCACAGATGAAATTGACACCCAAATTCCGGCTTGCCACAACCTCCGCATTGCCGTCGTCGATGCCGGCCTCTGATTTGGAGCAAGCCTCATGGGAGACACCCCTCATACCTGGCCTTCCTGATGATGCTGCTCTCAACTGTCTCCTCCGGCTACCTGTTGAGACCCATGAGGCATGCAGGCTTGTGTGTCGCCGGTGGCATCACCTCCTAGCTGACAAGGCGCGGTTCTTCATGCAGAGGAAGGTGATGGGTTTTCGGTCACCGTTGTTGTTCACCCTGGCTTTCCACCGTTGCACTGGTAAGATACAGTGGAAGGTGCTGGACCTGAACTACTTGACCTGGCATACAATTCCTGCCATGCCGTGTCGGGATCGGGCTTGCCCCCGAGGTTTCGGTTGCGTTGCTATCCCCAGTGACGGCACCCTCCTTGTTTGCGGCGGGTTGGTCTCGGACATGGATTGCCCATTGCACTTGGTCCTTAAGTATGATGTTTATAAGAACCGATGGACCGTGATGACTCGAATGCTTGCTGCACGGTCTTTCTTTGCGGGTGGCGTCATTGATGGACGGGTTTATGTAGCTGGAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB675973             [                                                         CTCTCCTCCATACTATCTTCTGTTGGAGAACAGCAGCAAGCAGAAAAGGGACCAGGGAATCAAAGGCTTCCTGTATAGATCTTTGGAGGAAAGATCCTTTCTTTCTGCAGGAATTCAGGGCATTGCTGGTGTCCTCTTCAGTTGTGCTAAATCTGTGACGAGTATGCGCCGCGTCCGGGTCTCATCCCACCAATCTCCAGTCCACAAGCTTGGTGATTCACAGATGAAATTGACACCCAAATTCCGGCTTGCCACAACCTCCGCATTGCCGTCGTCGATGCCGGCCTCTGATTTGGAGCAAGCCTCATGGGAGACACCCCTCATACCTGGCCTTCCTGATGATGCTGCTCTCAACTGTCTCCTCCGGCTACCTGTTGAGACCCATGAGGCATGCAGGCTTGTGTGTCGCCGGTGGCATCACCTCCTAGCTGACAAGGCGCGGTTCTTCATGCAGAGGAAGGTGATGGGTTTTCGGTCACCGTTGTTGTTCACCCTGGCTTTCCACCGTTGCACTGGTAAGATACAGTGGAAGGTGCTGGACCTGAACTACTTGACCTGGCATACAATTCCTGCCATGCCGTGTCGGGATCGGGCTTGCCCCCGAGGTTTCGGTTGCGTTGCTATCCCCAGTGACGGCACCCTCCTTGTTTGCGGCGGGTTGGTCTCGGACATGGATTGCCCATTGCACTTGGTCCTTAAGTATGATGTTTATAAGAACCGATGGACCGTGATGACTCGAATGCTTGCTGCACGGTCTTTCTTTGCGGGTGGCGTCATTGATGGACGGGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB675974             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACGGTCTTTCTTTGCGGGTGGCGTCATTGATGGACGGGTTTATGTAGCTGGAGGTTATAGTACTGACCAGTTTGAGCTCAATTCAGCAGAGGTTCTTGATCCGGTTAAGGGTGTGTGGCAACCAGTTGCTAGTATGGGCATGAACATGGCATCCTCGGATTCTGCTGTCATCAGTGGTAGGCTTTATGTCACTGAAGGCTGTGCATGGCCTTTCTTC TCCTCGCCGAGAGGTCAGGTTTA TGATCCAAAGA TTGACCG CTGGGA GGTTATGCCAGTTGGAATGCGTGAAGGGTGGACCGGTTTAAGTGTTGTCATCGACAAACATTTGTTCGTCA TTTCAGAATATGAGAGGATGAAGGTTAAAGTCTACGATCCAGAAACGGACTCATGGGACTCTGTAAAAGGCCCTCCTATGCCTGAACGAATTATGAAGCCATTTTCGGTGAGTTGTTTGGAGAATAAGATTGTTGTTGTTGGCCGAGGCCTCCATGTAGCTATTGGCCATGTCAAGAAGCAACCTGGCAGCCATCCTGATAGTAGGAGCTCAAGCTACTTAATTCAGTGGCAAGATGTGGATGTTCCTAGGGAATTTGGTGATCTGACACCTTCAAACAGTCAGATTTTGTATGCTTAACTGCTGAAAATGCCGGATCTGCAGAGAGGCCATTGTTGTTCTTTCATTTTATTTGGCCAACTGGGTAAAGCCCTATTCTGAGCTGTAAAATTGTTCTCCTCTGTATGTT AGTCTCTTTCCCAGTTAATTTTACAGCCTGTAAGTGTTATGTCAGTAAATAAAT A AAAAAATTCAAG                                                                                                                                      ]
[-] EMBL CB618344             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ACGGGTTTATGTAGCTGGAGGTTATAGTACTGACCAGTTTGAGCTCAATTCAGCAGAGGTTCTTGATCCGGTTAAGGGTGTGTGGCAACCAGTTGCTAGTATGGGCATGAACATGGCATCCTCGGATTCTGCTGTCATCAGTGGTAGGCTTTATGTCACTGAAGGCTGTGCATGGCCTTTCTTC TCCTCGCCGAGAGGTCAGGTTTA TGATCCAAAGA TTGACCG CTGGGA GGTTATGCCAGTTGGAATGCGTGAAGGGTGGACCGGTTTAAGTGTTGTCATCGACAAACATTTGTTCGTCA TTTCAGAATATGAGAGGATGAAGGTTAAAGTCTACGATCCAGAAACGGACTCATGGGACTCTGTAAAAGGCCCTCCTATGCCTGAACGAATTATGAAGCCATTTTCGGTGAGTTGTTTGGAGAATAAGATTGTTGTTGTTGGCCGAGGCCTCCATGTAGCTATTGGCCATGTCAAGAAGCAACCTGGCAGCCATCCTGATAGTAGGAGCTCAAGCTACTTAATTCAGTGGCAAGATGTGGATGTTCCTAGGGAATTTGGTGATCTGACACCTTCAAACAGTCAGATTTTGTATGCTTAACTGCTGAAAATGCCGGATCTGCAGAGAGGCCATTGTTGTTCTTTCATTTTATTTGGCCAACTGGGTAAAGCCCTATTCTGAGCTGTAAAATTGTTCTCCTCTGTATGTT AGTCTCTTTCCCAGTTAATTTTACAGCCTGTAAGTGTTATGTCAGTAAATAAAT A AAAAAATTCAAGA                                                                                                                                     ]
[-] EMBL CB675766             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGAGGTTATAGTACTGACCAGTTTGAGCTCAATTCAGCAGAGGTTCTTGATCCGGTTAAGGGTGTGTGGCAACCAGTTGCTAGTATGGGCATGAACATGGCATCCTCGGATTCTGCTGTCATCAGTGGTAGGCTTTATGTCACTGAAGGCTGTGCATGGCCTTTCTTC TCCTCGCCGAGAGGTCAGGTTTA TGATCCAAAGA TTGACCG CTGGGA GGTTATGCCAGTTGGAATGCGTGAAGGGTGGACCGGTTTAAGTGTTGTCATCGACAAACATTTGTTCGTCA TTTCAGAATATGAGAGGATGAAGGTTAAAGTCTACGATCCAGAAACGGACTCATGGGACTCTGTAAAAGGCCCTCCTATGCCTGAACGAATTATGAAGCCATTTTCGGTGAGTTGTTTGGAGAATAAGATTGTTGTTGTTGGCCGAGGCCTCCATGTAGCTATTGGCCATGTCAAGAAGCAACCTGGCAGCCATCCTGATAGTAGGAGCTCAAGCTACTTAATTCAGTGGCAAGATGTGGATGTTCCTAGGGAATTTGGTGATCTGACACCTTCAAACAGTCAGATTTTGTATGCTTAACTGCTGAAAATGCCGGATCTGCAGAGAGGCCATTGTTGTTCTTTCATTTTATTTGGCCAACTGGGTAAAGCCCTATTCTGAGCTGTAAAATTGTTCTCCTCTGTATGTT AGTCTCTTTCCCAGTTAATTTTACAGCCTGTAAGTGTTATGTCAGTAAATAAAT A AAAAAATTCAAGAGATTGTTGTAAGTAGAAGTTTGCCGGTACTTGAGACA                                                                                                ]
[+] EMBL BP184602             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTGCTAGTATGGGCATGAACATGGCATCCTCGGATTCTGCTGTCATCAGTGGTAGGCTTTATGTCACTGAAGGCTGTGCATGGCCTTTCTTC TCCTCGCCGAGAGGTCAGGTTTA TGATCCAAAGA TTGACCG CTGGGA GGTTATGCCAGTTGGAATGCGTGAAGGGTGGACCGGTTTAAGTGTTGTCATCGACAAACATTTGTTCGTCA TTTCAGAATATGAGAGGATGAAGGTTAAAGTCTACGATCCAGAAACGGACTCATGGGACTCTGTAAAAGGCCCTCCTATGCCTGAACGAATTATGAAGCCATTTTCGGTGAGTTGTTTGGAGAATAAGATTGTTGTTGTTGGCCGAGGCCTCCATGTAGCTATTGGCCATGTCAAGAAGCAACCTGGCAGCCATCCTGATAGTAGGAGCTCAAGCTACTTAATTCAGTGGCAAGATGTGGATGTTCCTAGGGAATTTGGTGATCTGACACCTTCAAACAGTCAGATTTTGTATGCTTAACTGCTGAAAATGCCGGATCTGCAGAGAGGCCATTGTTGTTCTTTCATTTTATTTGGCCAACTGGGTAAAGCCCTATTCTGAGCTGTAAAATTGTTCTCCTCTGTATGTTAAGTCTCTTTCCCAGTTAATTTTACAGCCTGTAAGTGTTATGTCAGTAAATAAATAA AAAAAATTCAAGAGATTGTTGTAAaa                                                                                                                        ]
[+] EMBL BM418788             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTCTTCTTCCTCGCCGAGAGGTCAGGTTTATTGATCC AAGATTTGACCGTCTGGGAGGGTTATGCCAGTTGGAATGCGTGAAGGGTGGACCGGTTTAAGTGTTGTCATCGAC AACATTTGTTCGTCACTTTCAGAATATGAGAGGATGAAGGTTAAAGTCTACGATCCAGAAACGGACTCATGGGACTCTGTAAAAGGCCCTCCTATGCCTGAACGAATTATGAAGCCATTTTCGGTGAGTTGTTTGGAGAATAAGATTGTTGTTGTTGGCCGAGGCCTCCATGTAGCTATTGGCCATGTCAAGAAGCAACCTGGCAGCCATCCTGATAGTAGGAGCTCAAGCTACTTAATTCAGTGGCAAGATGTGGATGTTCCTAGGGAATTTGGTGATCTGACACCTTCAAACAGTCAGATTTTGTATGCTTAACTGCTGAAAATGCCGGATCTGCAGAGAGGCCATTGTTGTTCTTTCATTTTATTTGGCCAACTGGGTAAAGCCCTATTCTGAGCTGTAAAATTGTTCTCCTCTGTATGTT AGTCTCTTTCCCAGTTAATTTTACAGCCTGTAAGTGTTATGTCAGTAAATAAAT ACAAAAAATTCAAGAGATTGTTGTAAGTAAAAa                                                                                                                   ]
[-] EMBL CF280582             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGAAGCCATTTTCGGTGAGTTGTTTGGAGAATAAGATTGTTGTTGTTGGCCGAGGCCTCCATGTAGCTATTGGCCATGTCAAGAAGCAACCTGGCAGCCATCCTGATAGTAGGAGCTCAAGCTACTTAATTCAGTGGCAAGATGTGGATGTTCCTAGGGAATTTGGTGATCTGACACCTTCAAACAGTCAGATTTTGTATGCTTAACTGCTGAAAATGCCGGATGTGCAGAGAGGCCATTGTTGTTCTTTCATTTTATTTGGCCAACTGGGTAAAGCCCTAATCAGAACTGTAAAATTGTTCTCCTCTGTATGTT AGTCTCTTTCCCAAAAAAATTTACAGTCTGTAAGTGTCATGTCAGTAAATAAAT A AAAAAATTCAAGAGATTGTTGTAAGTAGAAGTTTGCCGGTACTTGAGACAATTTGTTGTATTTGCTCTTTAAACTGATTTTGACTTCTTGGTCAGTTCAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTGCGTAGCGTATCGTTG]




>consensus_13133#0
GTTAAAAAGGAGCACACACACAACTCTTGCAAATGTCAGGGGGAGGAGGAGCTTTTCCTC
TCCTCCATACTATCTTCTGTTGGAGAACAGCAGCAAGCAGAAAAGGGACCAGGGAATCAA
AGGCTTCCTGTATAGATCTTTGGAGGAAAGATCCTTTCTTTCTGCAGGAATTCAGGGCAT
TGCTGGTGTCCTCTTCAGTTGTGCTAAATCTGTGACGAGTATGCGCCGCGTCCGGGTCTC
ATCCCACCAATCTCCAGTCCACAAGCTTGGTGATTCACAGATGAAATTGACACCCAAATT
CCGGCTTGCCACAACCTCCGCATTGCCGTCGTCGATGCCGGCCTCTGATTTGGAGCAAGC
CTCATGGGAGACACCCCTCATACCTGGCCTTCCTGATGATGCTGCTCTCAACTGTCTCCT
CCGGCTACCTGTTGAGACCCATGAGGCATGCAGGCTTGTGTGTCGCCGGTGGCATCACCT
CCTAGCTGACAAGGCGCGGTTCTTCATGCAGAGGAAGGTGATGGGTTTTCGGTCACCGTT
GTTGTTCACCCTGGCTTTCCACCGTTGCACTGGTAAGATACAGTGGAAGGTGCTGGACCT
GAACTACTTGACCTGGCATACAATTCCTGCCATGCCGTGTCGGGATCGGGCTTGCCCCCG
AGGTTTCGGTTGCGTTGCTATCCCCAGTGACGGCACCCTCCTTGTTTGCGGCGGGTTGGT
CTCGGACATGGATTGCCCATTGCACTTGGTCCTTAAGTATGATGTTTATAAGAACCGATG
GACCGTGATGACTCGAATGCTTGCTGCACGGTCTTTCTTTGCGGGTGGCGTCATTGATGG
ACGGGTTTATGTAGCTGGAGGTTATAGTACTGACCAGTTTGAGCTCAATTCAGCAGAGGT
TCTTGATCCGGTTAAGGGTGTGTGGCAACCAGTTGCTAGTATGGGCATGAACATGGCATC
CTCGGATTCTGCTGTCATCAGTGGTAGGCTTTATGTCACTGAAGGCTGTGCATGGCCTTT
CTTCTCCTCGCCGAGAGGTCAGGTTTATGATCCAAAGATTGACCGCTGGGAGGTTATGCC
AGTTGGAATGCGTGAAGGGTGGACCGGTTTAAGTGTTGTCATCGACAAACATTTGTTCGT
CATTTCAGAATATGAGAGGATGAAGGTTAAAGTCTACGATCCAGAAACGGACTCATGGGA
CTCTGTAAAAGGCCCTCCTATGCCTGAACGAATTATGAAGCCATTTTCGGTGAGTTGTTT
GGAGAATAAGATTGTTGTTGTTGGCCGAGGCCTCCATGTAGCTATTGGCCATGTCAAGAA
GCAACCTGGCAGCCATCCTGATAGTAGGAGCTCAAGCTACTTAATTCAGTGGCAAGATGT
GGATGTTCCTAGGGAATTTGGTGATCTGACACCTTCAAACAGTCAGATTTTGTATGCTTA
ACTGCTGAAAATGCCGGATCTGCAGAGAGGCCATTGTTGTTCTTTCATTTTATTTGGCCA
ACTGGGTAAAGCCCTATTCTGAGCTGTAAAATTGTTCTCCTCTGTATGTTAGTCTCTTTC
CCAGTTAATTTTACAGCCTGTAAGTGTTATGTCAGTAAATAAATAAAAAAATTCAAGAGA
TTGTTGTAAGTAGAAGTTTGCCGGTACTTGAGACAATTTGTTGTATTTGCTCTTTAAACT
GATTTTGACTTCTTGGTCAGTTCAAAAAAAAAAAAAAAAAAAATGTCATGCCGTTGCGTA
GCGTATCGTTG

consensusID : consensus_13133#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 548
fasta sequence

                              [TGGACTGAAGAGTAGAAAAGGGGAGGAGGAGCTTTTCCTCTCCTCCATACTATCTTCTGTTGGAGAACAGCAGCAAGCAGAAAAGGGACCAGGGAATCAAAGGCTTCCTGTATAGATCTTTGGAGGAAAGATCCTTTCTTTCTGCAGGAATTCAGGGCATTGCTGGTGTCCTCTTCAGTTGTGCTAAATCTGTGACGAGTATGCGCCGCGTCCGGGTCTCATCCCACCAATCTCCAGTCCACAAGCTTGGTGATTCACAGATGAAATTGACACCCAAATTCCGGCTTGCCACAACCTCCCATTGCCGTCGTCGATGCCGGCCTCTGATTTGGAGCAAGCCTCATGGGAGACACCCCTCATACCTGGCCTTCCTGATGATGCTGCTCTCAACTGTCTCCTCCGGCTACCTGTTGAGACCCATGAGGCACGCAGGCNNTTGTGTGTCGCCGGTGGCATCACCTCCTAGCTGACAGGGCGCGGTTCTTCATGCAGAGGAAGGTGATGGGTTTTTCGGTCACCGTTTGTTGTTCACCCTGGCTTTCCACCGT]

[+] EMBL CF280581             [TGGACTGAAGAGTAGAAAAGGGGAGGAGGAGCTTTTCCTCTCCTCCATACTATCTTCTGTTGGAGAACAGCAGCAAGCAGAAAAGGGACCAGGGAATCAAAGGCTTCCTGTATAGATCTTTGGAGGAAAGATCCTTTCTTTCTGCAGGAATTCAGGGCATTGCTGGTGTCCTCTTCAGTTGTGCTAAATCTGTGACGAGTATGCGCCGCGTCCGGGTCTCATCCCACCAATCTCCAGTCCACAAGCTTGGTGATTCACAGATGAAATTGACACCCAAATTCCGGCTTGCCACAACCTCCCATTGCCGTCGTCGATGCCGGCCTCTGATTTGGAGCAAGCCTCATGGGAGACACCCCTCATACCTGGCCTTCCTGATGATGCTGCTCTCAACTGTCTCCTCCGGCTACCTGTTGAGACCCATGAGGCACGCAGGCNNTTGTGTGTCGCCGGTGGCATCACCTCCTAGCTGACAGGGCGCGGTTCTTCATGCAGAGGAAGGTGATGGGTTTTTCGGTCACCGTTTGTTGTTCACCCTGGCTTTCCACCGT]
[+] EMBL CF326733             [                            GAGCTTTTCCTCTCCTCCATACTATCTTCTGTTGGAGAACAGCAGCAAGCAGAAAAGGGACCAGAGAATCAAAGGCTTCCTGTATAGATCTTTGGAGGAAAGATCCTTTCTTTCTGCAGGAATTCAGGGCATTGCTGTTGTCCTCTTCAGTTGTGCTAAATCTGTGACGAGTATGCGCCGCGTCCGGGTCTCATCCCACCAATCTCCAGTCCACAAGCTTGGTGATTCACAGATGAAATTGACACCCAAATTCC                                                                                                                                                                                                                                                                          ]




>consensus_13133#1
TGGACTGAAGAGTAGAAAAGGGGAGGAGGAGCTTTTCCTCTCCTCCATACTATCTTCTGT
TGGAGAACAGCAGCAAGCAGAAAAGGGACCAGGGAATCAAAGGCTTCCTGTATAGATCTT
TGGAGGAAAGATCCTTTCTTTCTGCAGGAATTCAGGGCATTGCTGGTGTCCTCTTCAGTT
GTGCTAAATCTGTGACGAGTATGCGCCGCGTCCGGGTCTCATCCCACCAATCTCCAGTCC
ACAAGCTTGGTGATTCACAGATGAAATTGACACCCAAATTCCGGCTTGCCACAACCTCCC
ATTGCCGTCGTCGATGCCGGCCTCTGATTTGGAGCAAGCCTCATGGGAGACACCCCTCAT
ACCTGGCCTTCCTGATGATGCTGCTCTCAACTGTCTCCTCCGGCTACCTGTTGAGACCCA
TGAGGCACGCAGGCNNTTGTGTGTCGCCGGTGGCATCACCTCCTAGCTGACAGGGCGCGG
TTCTTCATGCAGAGGAAGGTGATGGGTTTTTCGGTCACCGTTTGTTGTTCACCCTGGCTT
TCCACCGT

consensusID : consensus_13133#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 129
fasta sequence

                              [TACTTGAGACAATTAGTTGTATATGCTCTTTAAACTGATTTTGACTTCTTGTTCAGTGCAAAAAAAAAATGAAAATAAAAAAAAAAGAAGAAAAAAAAAAAATCCCTGTGATGCCGTTACGTACCGTAT]

[+] EMBL CF311755             [TACTTGAGACAATTAGTTGTATATGCTCTTTAAACTGATTTTGACTTCTTGTTCAGTGCAAAAAAAAAATGAAAATAAAAAAAAAAGAAGAAAAAAAAAAAATCCCTGTGATGCCGTTACGTACCGTAT]




>consensus_13133#2
TACTTGAGACAATTAGTTGTATATGCTCTTTAAACTGATTTTGACTTCTTGTTCAGTGCA
AAAAAAAAATGAAAATAAAAAAAAAAGAAGAAAAAAAAAAAATCCCTGTGATGCCGTTAC
GTACCGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13133#0      GTTAAAAAGGAGCACACACACAACTCTTGCAAATGTCAGGGGGAGGAGGAGCTTTTCCTC 60
consensus_13133#1      --------------------TGGACTGAAGAGTAGAAAAGGGGAGGAGGAGCTTTTCCTC 40
consensus_13133#2      ----------------------TACTTGAGA-CAATTAGTTGTATATGCTCTTTAAACTG 37
                                                     *      *   * *   *    **   ** 

consensus_13133#0      TCCTCCATACTATCTTCTGTTGGAGAACAGCA-GCAAGCAGAAAAGGGACCAGGGAATCA 119
consensus_13133#1      TCCTCCATACTATCTTCTGTTGGAGAACAGCA-GCAAGCAGAAAAGGGACCAGGGAATCA 99
consensus_13133#2      ATTTTGACTTCTTGTTCAGTGCAAAAAAAAAATGAAAATAAAAAAAAAAGAAGAAAAAAA 97
                          *  *     * *** **   * ** *  * * **  * ****   *  **  **  *

consensus_13133#0      AAGGCTTCCTGTATAGATCTTTGGAGGAAAGATCCTTTCTTTCTGCAGGAATTCAGGGCA 179
consensus_13133#1      AAGGCTTCCTGTATAGATCTTTGGAGGAAAGATCCTTTCTTTCTGCAGGAATTCAGGGCA 159
consensus_13133#2      AAAAATCCCTGTG-ATGCCGTTACGTACCGTAT--------------------------- 129
                       **   * *****  *   * **         **                           

consensus_13133#0      TTGCTGGTGTCCTCTTCAGTTGTGCTAAATCTGTGACGAGTATGCGCCGCGTCCGGGTCT 239
consensus_13133#1      TTGCTGGTGTCCTCTTCAGTTGTGCTAAATCTGTGACGAGTATGCGCCGCGTCCGGGTCT 219
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      CATCCCACCAATCTCCAGTCCACAAGCTTGGTGATTCACAGATGAAATTGACACCCAAAT 299
consensus_13133#1      CATCCCACCAATCTCCAGTCCACAAGCTTGGTGATTCACAGATGAAATTGACACCCAAAT 279
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      TCCGGCTTGCCACAACCTCCGCATTGCCGTCGTCGATGCCGGCCTCTGATTTGGAGCAAG 359
consensus_13133#1      TCCGGCTTGCCACAACCTCC-CATTGCCGTCGTCGATGCCGGCCTCTGATTTGGAGCAAG 338
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      CCTCATGGGAGACACCCCTCATACCTGGCCTTCCTGATGATGCTGCTCTCAACTGTCTCC 419
consensus_13133#1      CCTCATGGGAGACACCCCTCATACCTGGCCTTCCTGATGATGCTGCTCTCAACTGTCTCC 398
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      TCCGGCTACCTGTTGAGACCCATGAGGCATGCAGGCTT--GTGTGTCGCCGGTGGCATCA 477
consensus_13133#1      TCCGGCTACCTGTTGAGACCCATGAGGCACGCAGGCNNTTGTGTGTCGCCGGTGGCATCA 458
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      CCTCCTAGCTGACAAGGCGCGGTTCTTCATGCAGAGGAAGGTGATGGGTTTT-CGGTCAC 536
consensus_13133#1      CCTCCTAGCTGACAGGGCGCGGTTCTTCATGCAGAGGAAGGTGATGGGTTTTTCGGTCAC 518
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      CGTT-GTTGTTCACCCTGGCTTTCCACCGTTGCACTGGTAAGATACAGTGGAAGGTGCTG 595
consensus_13133#1      CGTTTGTTGTTCACCCTGGCTTTCCACCGT------------------------------ 548
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      GACCTGAACTACTTGACCTGGCATACAATTCCTGCCATGCCGTGTCGGGATCGGGCTTGC 655
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      CCCCGAGGTTTCGGTTGCGTTGCTATCCCCAGTGACGGCACCCTCCTTGTTTGCGGCGGG 715
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      TTGGTCTCGGACATGGATTGCCCATTGCACTTGGTCCTTAAGTATGATGTTTATAAGAAC 775
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      CGATGGACCGTGATGACTCGAATGCTTGCTGCACGGTCTTTCTTTGCGGGTGGCGTCATT 835
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      GATGGACGGGTTTATGTAGCTGGAGGTTATAGTACTGACCAGTTTGAGCTCAATTCAGCA 895
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      GAGGTTCTTGATCCGGTTAAGGGTGTGTGGCAACCAGTTGCTAGTATGGGCATGAACATG 955
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      GCATCCTCGGATTCTGCTGTCATCAGTGGTAGGCTTTATGTCACTGAAGGCTGTGCATGG 1015
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      CCTTTCTTCTCCTCGCCGAGAGGTCAGGTTTATGATCCAAAGATTGACCGCTGGGAGGTT 1075
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      ATGCCAGTTGGAATGCGTGAAGGGTGGACCGGTTTAAGTGTTGTCATCGACAAACATTTG 1135
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      TTCGTCATTTCAGAATATGAGAGGATGAAGGTTAAAGTCTACGATCCAGAAACGGACTCA 1195
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      TGGGACTCTGTAAAAGGCCCTCCTATGCCTGAACGAATTATGAAGCCATTTTCGGTGAGT 1255
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      TGTTTGGAGAATAAGATTGTTGTTGTTGGCCGAGGCCTCCATGTAGCTATTGGCCATGTC 1315
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      AAGAAGCAACCTGGCAGCCATCCTGATAGTAGGAGCTCAAGCTACTTAATTCAGTGGCAA 1375
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      GATGTGGATGTTCCTAGGGAATTTGGTGATCTGACACCTTCAAACAGTCAGATTTTGTAT 1435
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      GCTTAACTGCTGAAAATGCCGGATCTGCAGAGAGGCCATTGTTGTTCTTTCATTTTATTT 1495
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      GGCCAACTGGGTAAAGCCCTATTCTGAGCTGTAAAATTGTTCTCCTCTGTATGTTAGTCT 1555
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      CTTTCCCAGTTAATTTTACAGCCTGTAAGTGTTATGTCAGTAAATAAATAAAAAAATTCA 1615
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      AGAGATTGTTGTAAGTAGAAGTTTGCCGGTACTTGAGACAATTTGTTGTATTTGCTCTTT 1675
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      AAACTGATTTTGACTTCTTGGTCAGTTCAAAAAAAAAAAAAAAAAAAATGTCATGCCGTT 1735
consensus_13133#1      ------------------------------------------------------------
consensus_13133#2      ------------------------------------------------------------
                                                                                   

consensus_13133#0      GCGTAGCGTATCGTTG 1751
consensus_13133#1      ----------------
consensus_13133#2      ----------------