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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1316 fasta sequence
[AATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAANNCCNCCCGCCCCAA-AATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGA-TCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC----TTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTC-GTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATCTATCAAAAATCCCCTCTTGTTTTTTTCTTCTCTCATCGGGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAGACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGACGTATTTCTCTTTTTTGTGGATGGATGAGGGAGAACTATGGTCCTGGATTTTTGGAAGCATTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGAAATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAACCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCCAATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTGTGTGAAGGTGACAAACAGCAGCTTCAATGGTTTTATAGTGCATGTTGTGGCATTCCACAGGTTGCCAGCATGGTTCCTGCTCAACCAGCGAATGCCCCACTGCCAA]
[+] EMBL AU055803 [AATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAANNCCNCCCGCCCCAA AATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCGCCCGCGGGTTCCTGAGCCCCGCGCGCGCG GATTCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC TTTTTTNTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCA TGTTCGGTAGAGAAATTGTTTTNGGGGGCTTTTCCAACCAATCCTGCAGCGATT CCCGCAGAAA CTCTNA CAT TATCAAAAncctctgg ]
[+] EMBL AK100927 [ GGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAA AATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGA TCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC TTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTC GTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATCTATCAAAAATCCCCTCTTGTTTTTTTCTTCTCTCATCGGGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAGACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGACGTATTTCTCTTTTTTGTGGATGGATGAGGGAGAACTATGGTCCTGGATTTTTGGAAGCATTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGAAATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAACCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCCAATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTGTGTGAAGGTGACAAACAGCAGCTTCAATGGTTTTATAGTGCATGTTGTGGCATTCCACAGGTTGCCAGCATGGTTCCTGCTCAACCAGCGAATGCCCCAC ]
[+] EMBL CB630595 [ CCAACAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGG AAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGA TCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTCTTCTTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTC GTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCTCCATCTATCAAAAATACCCTCTTGTTTTTTTCTTCTCTCATC GGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAGACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCAC ]
[+] EMBL AU197557 [ CAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGA TCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC TTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTC ]
[+] EMBL CB637506 [ GGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC TTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTC GTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATCTATCAAAAATCCCCTCTTGTTTTTTTCTTCTCTCATCGGGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCANGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGG ]
[+] EMBL CB666733 [ AAGGAGGCGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCCGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAGACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGACGTATTTCTCTTTTTTGTGGATGGATGAAGGAGAACTATGGTCCTGGATTTTTGGAAGCATTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGAAATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAACCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCCAATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTGTGTGAAGGTGACAAACAGCAGCTTCAATGGATTTATAGTGCATGTTGTGGCATTCCACAGGTTGCCAGCATGGTTCCTGCTCCACCAGCGAATGCCCCACTGCCAA]
[+] EMBL CB666034 [ GCTCCCGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAGACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGACGTATTTCTCTTTTTTGTGGATGGATGAGGGAGAACTATGGTCCTGGATTTTTGGAAGCATTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGAAATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAACCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCCAATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTGTGTGAAGGTGACAAACAGCAGCTTCAATGGTTTTATAGTGCATGTTGTGGCATTCCACAGGTTGCCAGCATGGTTCCTGCTCAACCAGCGAATGCCCCAC ]
[+] EMBL AU055998 [ ncaCAAGAAAGGTCTTGAGCAGACTGTCCATNTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCACACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGACGTATTTCTCTTTTTTGTGGATGGATGAGGGAGAACTATGGTCCTGGATTTTTGGAAGCATTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGAAATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAACCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCCAATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTGTGTGAAGGTGACAAACAGCAGCTTCAATGGTTTTATAGTGCATGTTGTGGCATTCCACAGGTTGCCAGCATGGTTCCTGCTCAACCAGCGAATGNCCCAC ]
consensusID : consensus_13138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence
[ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGGTTCTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGGTTTTGGGGGCTGTTACACCCAGTCCTGCATCGAATCCCCTGAGAAACCCTCTACCATCTATCAAAATACACTCTTGGATGTTGCTTTCTAACGGGGGGAAAAAATAGAAGATCCGCTGTTTGGTGGGCGAATCTGACGCCTTATAGGCTGCGGAAGCCAGGAAGGAGTGGGGTGTCTCTAGTAACTGCGTTGATTCATCTGAAGTTTGTACTTAGGACATGGACTAAGATTGTTGCATGACTATGATGAATAATAGTGTAGGACAAAGCTGCGAGTTGATTATGACGTAAGTGCAGAGATGGTATTACTAGCTTCATTCGTGATAGTGAGGATAAAAGTGTATCTAACCTAGAGATTGTAAGCGCCTCAGTAAGATATGGTAG]
[+] EMBL AW155022 [ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGGTTCTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGGTTTTGGGGGCTGTTACACCCAGTCCTGCATCGAATCCCCTGAGAAACCCTCTACCATCTATCAAAATACACTCTTGGATGTTGCTTTCTAACGGGGGGAAAAAATAGAAGATCCGCTGTTTGGTGGGCGAATCTGACGCCTTATAGGCTGCGGAAGCCAGGAAGGAGTGGGGTGTCTCTAGTAACTGCGTTGATTCATCTGAAGTTTGTACTTAGGACATGGACTAAGATTGTTGCATGACTATGATGAATAATAGTGTAGGACAAAGCTGCGAGTTGATTATGACGTAAGTGCAGAGATGGTATTACTAGCTTCATTCGTGATAGTGAGGATAAAAGTGTATCTAACCTAGAGATTGTAAGCGCCTCAGTAAGATATGGTAG]
consensusID : consensus_13138#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 735 fasta sequence
[AAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTCTTCTTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCTCCATCTATCAAAAATACCCTCTTGTTTTTTTCTTCTCTCATCGGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGTATTAGCACTGCCCTGATTCAACTTATATCAGCACTGTTCTTCGTCCCCTGTGTTATAGATAAAAAGATGGTCTGTC]
[+] EMBL CB628644 [AAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTCTTCTTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCTCCATCTATCAAAAATACCCTCTTGTTTTTTTCTTCTCTCATCGGGGGAAAAAAAAAGAAGATCCCCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGGTGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCGCAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGCCTGATCTGATCAATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTACCGTCCTGGTATTAGCACTGCCCTGATTCAACTTATATCAGCACTGTTCTTCGTCCCCTGTGTTATAGATAAAAAGATGGTCTGTC]
consensusID : consensus_13138#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTCTTTNTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATCTATCANAAATCCCCTCTTGGTNTNTCTTCTCTCATCGGGGGAAAAAANAAGAGATCCCCTTTTTGGTTGCCGACTTGAGCCCGCATGGGCTGCAGCATCCAGGAAGAGCTGTGTATCACAGGTAACTACGGNACGCGATGGGATTCGGCGCTCGGNCAGGGGCGGTTTGAGTGGTCACAAGAAGGAGATCCTTGATGCCAACAGCGCCTGACTGACAGGGTAGGGTATAGTTGGTCAAGTACCTACCA]
[+] EMBL AW155293 [ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTCTTTNTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAATTTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGAGAAATTGTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATCTATCANAAATCCCCTCTTGGTNTNTCTTCTCTCATCGGGGGAAAAAANAAGAGATCCCCTTTTTGGTTGCCGACTTGAGCCCGCATGGGCTGCAGCATCCAGGAAGAGCTGTGTATCACAGGTAACTACGGNACGCGATGGGATTCGGCGCTCGGNCAGGGGCGGTTTGAGTGGTCACAAGAAGGAGATCCTTGATGCCAACAGCGCCTGACTGACAGGGTAGGGTATAGTTGGTCAAGTACCTACCA]
consensusID : consensus_13138#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence
[ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGNGGTCGACGAATTCCGCAACCCGTTGGTTCTTTTTTTTTCTTTTCCTCGATTGGTTTTCTGCGCGATTCCGATTCCGGCGAAATTTTTTTCTTTTTGGGCTTCCCTGTTCATTCTGAACTGCGCAGCTGTTCGTAAAAGAAATGGTTTTTGGGGCCTTTTCAACCCAATCTTGCACGAATTCCCCGAAAAAACTTTTAACCATTTTTCAAAAATCCCCTCTGGTTNTTTCCTTCTCTCATCGGGGGGAAAAAAAGAGAAGACCTCTTTTTGGGTGGCAATCTTGAGCCCATTGGGGCTGCAGAATCCAGGAAGGACTGGGTATACAGGTAACTACGCAACGCCATGGATCGGCGCCTGGCACAGGCCATGTCTGAGGGATCAATGAAGGAAACCCCTGTGGTCAAAGAAGGCAGTCAGAATGGGTAAGGCTTTAATTGGCAATAAACCC]
[+] EMBL AW155292 [ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAATACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCGCATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTGGAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAACCCTCGGGGTACTCGGATTCCGCCCGCACGGNGGTCGACGAATTCCGCAACCCGTTGGTTCTTTTTTTTTCTTTTCCTCGATTGGTTTTCTGCGCGATTCCGATTCCGGCGAAATTTTTTTCTTTTTGGGCTTCCCTGTTCATTCTGAACTGCGCAGCTGTTCGTAAAAGAAATGGTTTTTGGGGCCTTTTCAACCCAATCTTGCACGAATTCCCCGAAAAAACTTTTAACCATTTTTCAAAAATCCCCTCTGGTTNTTTCCTTCTCTCATCGGGGGGAAAAAAAGAGAAGACCTCTTTTTGGGTGGCAATCTTGAGCCCATTGGGGCTGCAGAATCCAGGAAGGACTGGGTATACAGGTAACTACGCAACGCCATGGATCGGCGCCTGGCACAGGCCATGTCTGAGGGATCAATGAAGGAAACCCCTGTGGTCAAAGAAGGCAGTCAGAATGGGTAAGGCTTTAATTGGCAATAAACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13138#1 ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAAT 60
consensus_13138#3 ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAAT 60
consensus_13138#4 ACGTAGTACGTTCTTGGCTGCATCCATCCCTTCGTCACTAAGGCAATTAATTAACAGAAT 60
consensus_13138#0 --------------------------------------------AATTAATTAACAGAAT 16
consensus_13138#2 ------------------------------------------------------------
consensus_13138#1 ACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCG 120
consensus_13138#3 ACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCG 120
consensus_13138#4 ACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCG 120
consensus_13138#0 ACTAATAAAAATTGTTTGTAAACTTGGCCTTCAATTTCCCACCCACTCGCGAGCTAACCG 76
consensus_13138#2 ------------------------------------------------------------
consensus_13138#1 CATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTG 180
consensus_13138#3 CATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTG 180
consensus_13138#4 CATTGAAAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTG 180
consensus_13138#0 CATTGAAAANNCCNCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTG 136
consensus_13138#2 ------AAATCCCCCCCGCCCCAAAATCTCCAATCCCCAACTCGCCCTCCCCTTGCCTTG 54
*** ** **********************************************
consensus_13138#1 GAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAAC 240
consensus_13138#3 GAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAAC 240
consensus_13138#4 GAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAAC 240
consensus_13138#0 GAAAATCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAAC 196
consensus_13138#2 GAAA-TCTTCTACTACTCCCCCCGCGGGTTCCTGAGCCCCGCGCGCGCGCGATCAGGAAC 113
**** *******************************************************
consensus_13138#1 CCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGGTTC 300
consensus_13138#3 CCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC 300
consensus_13138#4 CCTCGGGGTACTCGGATTCCGCCCGCACGGNGGTCGACGAATTCCGCAACCCGTTGGTTC 300
consensus_13138#0 CCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC 256
consensus_13138#2 CCTCGGGGTACTCGGATTCCGCCCGCACGGGGGTCGACGAATTCCGCAACCCGTTGTTTC 173
****************************** ************************* ***
consensus_13138#1 TT----TTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAAT 356
consensus_13138#3 TT----TNTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAAT 356
consensus_13138#4 TT----TTTTTTT-CTTTTCCTCGATTGGTTTT-CTGCGCGATTCCGATTCCGGCGAAAT 354
consensus_13138#0 TT----TTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAAT 312
consensus_13138#2 TTCTTTTTTTTTTTCTTTTCCTCGATTGGTTTTTCTGCGCGATTCCGATTCCGGCGGAAT 233
** * ***** ******************* ********************** ***
consensus_13138#1 TTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGA-GAAATT 415
consensus_13138#3 TTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGA-GAAATT 415
consensus_13138#4 TTTTTTCTTTTTGGGCTTCCCTGTTCATTCTGAACTGCGCAGCTGTTCGTAAAAGAAATG 414
consensus_13138#0 TTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGA-GAAATT 371
consensus_13138#2 TTTTTTTCTTTTTGGTCTCCCTGTTCCATCTGAACTGCGCAGCTGTTCGTAGA-GAAATT 292
****** **** ** ********* *********************** * *****
consensus_13138#1 GGTTTTGGGGGCTGTTACACCCAGTCCTGCATCGAATCCCCTGAGAAACCCTCTACCATC 475
consensus_13138#3 GTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATC 475
consensus_13138#4 GTTTTTGGGGCCTTTTCAACCCAATCTTGCACGAATTCCCCGAAAAAACTTTTAACCATT 474
consensus_13138#0 GTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCACCATC 431
consensus_13138#2 GTTTTTGGGGGCTTTTCCACCCAATCCTGCAGCGATTCCCCGCAGAAACCTCTCTCCATC 352
* ******** ** ** ***** ** **** * ***** * **** ****
consensus_13138#1 TATCAAAA-TACACTCTTGGATGTTGCTT-TCTAA-CGGGGG-GAAAAAATAGAAGATCC 531
consensus_13138#3 TATCANAAATCCCCTCTTGGTNTNTCTTC-TCTCA-TCGGGG-GAAAAAANAAGAGATCC 532
consensus_13138#4 TTTCAAAAATCCCCTCTGGTTNTTTCCTTCTCTCATCGGGGG-GAAAAAAAGAGAAGACC 533
consensus_13138#0 TATCAAAAATCCCCTCTTGTTTTTTTCTTCTCTCATCGGGGGGAAAAAAAAAGAAGATCC 491
consensus_13138#2 TATCAAAAATACCCTCTTGTTTTTTTCTTCTCTCATCGGGGG-AAAAAAAAAGAAGATCC 411
* *** ** * * **** * * * *** * **** ****** * **
consensus_13138#1 GCTGTTTGG-TGGGCGAATCTGACGCCTTATAGG-CTGCGG-AAGCCAGGAAGGAGTGGG 588
consensus_13138#3 CCTTTTTGG-TTGCCGA-CTTGAGCCCGCATGGG-CTGCAG-CATCCAGGAAG-AGCTGT 587
consensus_13138#4 TCTTTTTGG-GTGGCAATCTTGAGCCCATTGGGG-CTGCAG-AATCCAGGAAG-GACTGG 589
consensus_13138#0 CCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGG 551
consensus_13138#2 CCTTTTTGGGTGGGCGATCTTGAGCCCGCATGGGGCTGCAGCAATCCAAGGAGGAGCTGG 471
** ***** * * * *** ** ** **** * * *** * ** *
consensus_13138#1 -GTGTC-TCTAGT-AACTGCGTTGATTCATCTGAAGTTTG--TACTTAGGACATGGACTA 643
consensus_13138#3 -GTATC-ACAGGT-AACTACGGNACGCGAT--GGGATTCG--GCGCTCGGNCAGGGGC-- 638
consensus_13138#4 -GTAT--ACAGGT-AACTACGCAACGCCAT---GGATCGG--CGCCT--GGCACAGGCCA 638
consensus_13138#0 TGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCG 611
consensus_13138#2 TGTATCAGCAGGTCAACTACGGCAACGCCGATGGGATTCGGGCGCTCCGGGCGCAGGGCG 531
** * * ** **** ** * * * * *
consensus_13138#1 AGATTGTTGCATGA--CTATGATGAATAATAG-TGTAGGACAAAGCTGCGAGTTGATTAT 700
consensus_13138#3 -GGTT--TGAGTGG--TCACAA-GAAGGAGAT-CCTTGATGCCAACAGCGC-CTGACTGA 690
consensus_13138#4 TGTCTGAGGGAT----CAATGAAGGAAACCCC-TGTGGTCAAAGAAGGCAGTCAGAATG- 692
consensus_13138#0 CAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGC 671
consensus_13138#2 CAGGTCTTGAGTGGATCGACAAGGAAGGGAAGACGCCCCTGATGGTCGCGAGCATGCGGC 591
* * * * * * * **
consensus_13138#1 GACGTAAGTGCAGAGATGGTATTACTAGCTTCATTCGTGATAGTGAGGATAAAAGTGTAT 760
consensus_13138#3 CAGGGTAGGGTATAGTTGGT-CAAGTACCTACCA-------------------------- 723
consensus_13138#4 --GGTAAGGCTTTAATTGGCAATAAACCC------------------------------- 719
consensus_13138#0 CTGATCTGATCA-ATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTAC 730
consensus_13138#2 CTGATCTGATCA-ATGTGGTTCAGGTGCTGATTGAATTGGGTGCAAATGTGAACGCCTAC 650
* * ***
consensus_13138#1 CTAACCTAGAGATTGTA-AGCGCCTCAGTAAGATATGGTAG------------------- 800
consensus_13138#3 ------------------------------------------------------------
consensus_13138#4 ------------------------------------------------------------
consensus_13138#0 CGTCCTGGGTCATATTGTGGGACTGCATTGCACCATGCTGCCAAGAAAGGTCTTGAGCAG 790
consensus_13138#2 CGTCCTGG----TATTA--GCACTGCCCTG----ATTCAACTTATATCAGCACTGTTCT- 699
consensus_13138#1 ------------------------------------------------------------
consensus_13138#3 ------------------------------------------------------------
consensus_13138#4 ------------------------------------------------------------
consensus_13138#0 ACTGTCCATTTGCTTCTATCTCATGGAGCTAATCCGTTTATAACAAATGATGATTGCCAC 850
consensus_13138#2 -TCGTCCCCTGTGTTATAGATAA-AAAGATGGTCTGTC---------------------- 735
consensus_13138#1 ------------------------------------------------------------
consensus_13138#3 ------------------------------------------------------------
consensus_13138#4 ------------------------------------------------------------
consensus_13138#0 ACGGCACTTGATTTGGCTAGAGAAAAGGGTCATGTGAATGTCGTACGAGCCATAGAGGGA 910
consensus_13138#2 ------------------------------------------------------------
consensus_13138#1 ------------------------------------------------------------
consensus_13138#3 ------------------------------------------------------------
consensus_13138#4 ------------------------------------------------------------
consensus_13138#0 CGTATTTCTCTTTTTTGTGGATGGATGAGGGAGAACTATGGTCCTGGATTTTTGGAAGCA 970
consensus_13138#2 ------------------------------------------------------------
consensus_13138#1 ------------------------------------------------------------
consensus_13138#3 ------------------------------------------------------------
consensus_13138#4 ------------------------------------------------------------
consensus_13138#0 TTTGCTCCACAATTCCTGACTAGGAAAATTTGGGCGGTGATTTTACCCCGTGAAGCACGA 1030
consensus_13138#2 ------------------------------------------------------------
consensus_13138#1 ------------------------------------------------------------
consensus_13138#3 ------------------------------------------------------------
consensus_13138#4 ------------------------------------------------------------
consensus_13138#0 AATCAAACTCGGCCACTCAAGCTTGAGCTGACGATATACCCTGAATTGCAGGCTTCTAAA 1090
consensus_13138#2 ------------------------------------------------------------
consensus_13138#1 ------------------------------------------------------------
consensus_13138#3 ------------------------------------------------------------
consensus_13138#4 ------------------------------------------------------------
consensus_13138#0 CCACAAGCTGTAATTAAACTTTGGAAATGTCAACTTGAGGAACCAAAGTTTAATCAGGCC 1150
consensus_13138#2 ------------------------------------------------------------
consensus_13138#1 ------------------------------------------------------------
consensus_13138#3 ------------------------------------------------------------
consensus_13138#4 ------------------------------------------------------------
consensus_13138#0 AATCCTTCTGTGACAATTTTCGACAAGGGAACAAGAACTCGATACAAGCTTCTACCGGTG 1210
consensus_13138#2 ------------------------------------------------------------
consensus_13138#1 ------------------------------------------------------------
consensus_13138#3 ------------------------------------------------------------
consensus_13138#4 ------------------------------------------------------------
consensus_13138#0 TGTGAAGGTGACAAACAGCAGCTTCAATGGTTTTATAGTGCATGTTGTGGCATTCCACAG 1270
consensus_13138#2 ------------------------------------------------------------
consensus_13138#1 ----------------------------------------------
consensus_13138#3 ----------------------------------------------
consensus_13138#4 ----------------------------------------------
consensus_13138#0 GTTGCCAGCATGGTTCCTGCTCAACCAGCGAATGCCCCACTGCCAA 1316
consensus_13138#2 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||