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Oryza sativa
cluster # 13156 cluster # 13156       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13156#0 length = 2068 sequences # 6  
consensus_13156#1 length = 706 sequences # 5  
consensus_13156#2 length = 194 sequences # 1  

consensusID : consensus_13156#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2068
fasta sequence
                              [TTCTAGAAGAAGGAGAAAGAAATCGAAAGGCAGCAGCTGATGGTTGCATGCTGTGCGTCGCTCTCATGCTCAAAAGGTCAACAGAGTTGAGTCCCTCAGCTAAGGCAGGCAAGCACGAGAGTCACAGATACATATCCCCTTTAATCTCCTCTCCCACCAATCCTTTGATCCATTCATCCCAA-CTTCTTCCATAGTACAAATCTCTTGCTCCCCTCCCTCTCATCTCCTATCTGTATCTATTTCTATCTCTCTATCTCGTATCTCCTTGAAGAAGAACAGAGAGAGGATTGGGAGGAGTAGTAGGTAGTTGATTTAGTTTTGAGGAGCCGGAGAGGAGAGCAGGTGTCCTGGTTCGTGATTCGATTTCAGCTGTTCTGATCGCTTCTTGTGGCTTCTGTGCCGTGCTGGCCTCTCGTTCTTGAGCCTTTGTCGATTCGATTCCCGCGAAAAGGAGGCGTCTTTTTGTGAGTTAGGTGTGGTGCTTCTTGGGCTCTACTACCTCCGAGGTGAAGGTGTTGTTGTTGGTGGTGGTGGATTTTCGCCATGGGGAATTGCTGGGGCGCCAAGATCAGCTCGGAGAGCCCTTGCCGCAGCGCCTCCTCCCCTTCTGGGGGGACATCCAAGTATGCTAGCAACTCCAGTGTGTCTGCAGCCTCGGTGCCGCCAACACCACGGAGCGAGGATGAGATCCTGGAGGCAGCAAATGTCAAGGCCTTTGCCTTCAATGAGCTGAGGACTGCCACCAGAAACTTCCGGCCAGACAGTGTGCTTGGTGAGGGAGGCTTTGGATCAGTCTTCAAAGGGTGGATCGATGAGAAGACGCTCGCACCAACTAAGCCAGGCACAGGGATGGTCATTGCTGTAAAGAAGTTGAATCAGGAAGGCCACCAGGGTCACAGGGAATGGCTGGCTGAAGTGAATTATCTTGGACAGTTGTCACACCCATATCTTGTAAGGCTCGTTGGGTACTGCGTCGAAGATGAGCAGCGTCTTCTTGTTTATGAGTTCATGCCACGTGGTAGCTTGGAAAATCATCTTTTCAGGAGGAGTACGCATTTTCAGCCGCTCTCCTGGAACCTTCGGATGAAAATTGCCCTTGGAGCAGCAAAAGGGCTCGCATTTCTCCACAGTGACAAGGTTAAAGTCATCTACCGTGATTTCAAGACCTCTAATGTCCTTTTGGATGCGAACTATGATGCAAAGCTCTCTGATTTTGGGCTGGCAAAGGATGGACCGACTGGTGACAAGAGCCATGTCTCCACAAGGGTGATGGGGACTTATGGATATGCTGCACCAGAATACCTTGCAACAGGCCATCTGACCACCAAGAGCGACGTCTATAGCTTTGGAGTTGTGCTGCTAGAGATGCTATCAGGACGACGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTGGAGTGGGCTAGGCCATACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGGTTGGGCGGGCAGTACTCCCTTGCCAAGGCCCAGAAGGCTGCAACACTGGCACTTCAATGCATCTCTGTGGAGGCCAAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAGGAGACAGGGGCAAATCCT-CAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAG-CAATGGATCGAAACCGTCATCGAAGGGGAA-GCCCGCAAATGCGAGGCTGGTTTAAGTGAACAATCATATATCATATGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTATATCTGCATGCATTCAGTTCAGTGCATTGTGGATTGTACAGTTTATATCTAGTTCTAATGCTGCGAAATTTTTGTTCGAGGCAACAGATGTGCCCAGATCCAGTTTTTCCTGATTTTTAAATCTACAAGCTGCCCCAGATCATATTTTTGAGTTCTAAAAA]

[+] EMBL AK073169             [TTCTAGAAGAAGGAGAAAGAAATCGAAAGGCAGCAGCTGATGGTTGCATGCTGTGCGTCGCTCTCATGCTCAAAAGGTCAACAGAGTTGAGTCCCTCAGCTAAGGCAGGCAAGCACGAGAGTCACAGATACATATCCCCTTTAATCTCCTCTCCCACCAATCCTTTGATCCATTCATCCCAA CTTCTTCCATAGTACAAATCTCTTGCTCCCCTCCCTCTCATCTCCTATCTGTATCTATTTCTATCTCTCTATCTCGTATCTCCTTGAAGAAGAACAGAGAGAGGATTGGGAGGAGTAGTAGGTAGTTGATTTAGTTTTGAGGAGCCGGAGAGGAGAGCAGGTGTCCTGGTTCGTGATTCGATTTCAGCTGTTCTGATCGCTTCTTGTGGCTTCTGTGCCGTGCTGGCCTCTCGTTCTTGAGCCTTTGTCGATTCGATTCCCGCGAAAAGGAGGCGTCTTTTTGTGAGTTAGGTGTGGTGCTTCTTGGGCTCTACTACCTCCGAGGTGAAGGTGTTGTTGTTGGTGGTGGTGGATTTTCGCCATGGGGAATTGCTGGGGCGCCAAGATCAGCTCGGAGAGCCCTTGCCGCAGCGCCTCCTCCCCTTCTGGGGGGACATCCAAGTATGCTAGCAACTCCAGTGTGTCTGCAGCCTCGGTGCCGCCAACACCACGGAGCGAGGATGAGATCCTGGAGGCAGCAAATGTCAAGGCCTTTGCCTTCAATGAGCTGAGGACTGCCACCAGAAACTTCCGGCCAGACAGTGTGCTTGGTGAGGGAGGCTTTGGATCAGTCTTCAAAGGGTGGATCGATGAGAAGACGCTCGCACCAACTAAGCCAGGCACAGGGATGGTCATTGCTGTAAAGAAGTTGAATCAGGAAGGCCACCAGGGTCACAGGGAATGGCTGGCTGAAGTGAATTATCTTGGACAGTTGTCACACCCATATCTTGTAAGGCTCGTTGGGTACTGCGTCGAAGATGAGCAGCGTCTTCTTGTTTATGAGTTCATGCCACGTGGTAGCTTGGAAAATCATCTTTTCAGGAGGAGTACGCATTTTCAGCCGCTCTCCTGGAACCTTCGGATGAAAATTGCCCTTGGAGCAGCAAAAGGGCTCGCATTTCTCCACAGTGACAAGGTTAAAGTCATCTACCGTGATTTCAAGACCTCTAATGTCCTTTTGGATGCGAACTATGATGCAAAGCTCTCTGATTTTGGGCTGGCAAAGGATGGACCGACTGGTGACAAGAGCCATGTCTCCACAAGGGTGATGGGGACTTATGGATATGCTGCACCAGAATACCTTGCAACAGGCCATCTGACCACCAAGAGCGACGTCTATAGCTTTGGAGTTGTGCTGCTAGAGATGCTATCAGGACGACGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTGGAGTGGGCTAGGCCATACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGGTTGGGCGGGCAGTACTCCCTTGCCAAGGCCCAGAAGGCTGCAACACTGGCACTTCAATGCATCTCTGTGGAGGCCAAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAGGAGACAGGGGCAAATCCT CAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAG CAATGGATCGAAACCGTCATCGAAGGGGAA GCCCGCAAATGCGAGGCTGGTTTAAGTGAACAATCATATATCATATGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTATATCTGCATGCATTCAGTTCAGTGCATTGTGGATTGTACAGTTTATATCTAGTTCTAATGCTGCGAAATTTTTGTTCGAGGCAACAGATGTGCCCAGATCCAGTTTTTCCTGA                                                ]
[+] EMBL CB670245             [                                                                                                                                                                           ATTCATCCCAATCTTCTTCCATAGTACAAATCTCTTGCTCCCCTCCCTCTCATCTCCTATCTGTATCTATTTCTATCTCTCTATCTCGTATCTCCTTGAAGAAGAACAGAGAGAGGATTGGGAGGAGTAGTAGGTAGTTGATTTAGTTTTGAGGAGCCGGAGAGGAGAGCAGGTGTCCTGGTTCGTGATTCGATTTCAGCTGTTCTGATCGCTTCTTGTGGCTTCTGTGCCGTGCTGGCCTCTCGTTCTTGAGCCTTTGTCGATTCGATTCCCGCGAAAAGGAGGCGTCTTTTTGTGAGTTAGGTGTGGTGCTTCTTGGGCTCTACTACCTCCGAGGTGAAGGTGTTGTTGTTGGTGGTGGTGGATTTTCGCCATGGGGAATTGCTGGGGCGCCAAGATCAGCTCGGAGAGCCCTTGCCGCAGCGCCTCCTCCCCTTCTGGGGGGACATCCAAGTATGCTAGCAACTCCAGTGTGTCTGCAGCCTCGGTGCCGCCAACACCACGGAGCGAGGATGAGATCCTGGAGGCAGCAAATGTCAAGGCCTTTGCCTTCAATGAGCTGAGGACTGCCACCAGAAACTTCCGGCCAGACAGTGTGCTTGGTGAGGGAGGCTTTGGATCAGTCTTCAAAGGGTGGATCGATGAGAAGACGCTCGCACCAACTAAGCCAGGCACAGGGATGGTCATTGCTGTAAAGAAGTTGAATCAGGAAGGCCACCAGGGTCACAGGGAATGGCTGGCTGAAGTGAATTATCTTGGACAGTTGTCACACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF292401             [                                                                                                                                                                                                TAGTACATTTCTCTTGCTCCCCTCCCTCTCATCTCCTATCTGTATCTATTTCTATCTCTCTATCTCGTATCTCCTTGAAGAAGAACAGAGATAGGATTGGGAGGAGTAGTAGGTAGTTGATTTAGTTTTGAGGAGCCGTTTTTGAGAGCAGGTGTCCTGTTTCGTGATTCGATTTCAGCTGTTCTGATCGCTTCTTGTGGCTTCTGTGCCGTGCTGGCCTCTCGTTCTTGAGCCTTTGTCGATTCGATTCCCGCGAAAAGGAGGCGTCTTTTTGTGAGTTAGGTGTGGTGCTTCTTGGGCTCTACTACCTCCGAGGTGAAGGTGTTGTTGTTGGTGGTGGTGGATTTTCGCCATGGGGAATTGCTGGGGCGCCAAGATCAGCTCGGAGAGCCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB646951             [                                                                                                                                                                                                                                                                                                                                                                                                                                     GAGCCTTTGTCGATTCGATTCCCGCGAAAAGGAGGCGTCTTTTTGTGAGTTAGGTGTGGTGCTTCTTGGGCTCTACTACCTCCGAGGTGAAGGTGTTGTTGTTGGTGGTGGTGGATTTTCGCCATGGGGAATTGCTGGGGCGCCAAGATCAGCTCGGAGAGCCCTTGCCGCAGCGCCTCCTCCCCTTCTGGGGGGACATCCAAGTATGCTAGCAACTCCAGTGTGTCTGCAGCCTCGGTGCCGCCAACACCACGGAGCGAGGATGAGATCCTGGAGGCAGCAAATGTCAAGGCCTTTGCCTTCAATGAGCTGAGGACTGCCACCAGAAACTTCCGGCCAGACAGTGTGCTTGGTGAGGGAGGCTTTGGATCAGTCTTCAAAGGGTGGATCGATGAGAAGACGCTCGCACCAACTAAGCCAGGCACAGGGATGGTCATTGCTGTAAAGAAGTTGAATCAGGAAGGCCACCAGGGTCACAGGGAATGGCTGGCTGAAGTGAATTATCTTGGACAGTTGTCACACCCATATCTTGTAAGGCTCGTTGGGTACTGCGTCGAAGATGAGCAGCGTCTTCTTGTTTATGAGTTCATGCCACGTGGTAGCTTGGAAAATCATCTTTTCAGGAGGAGTACGCATTTTCAGCCGCTCTCCTGGAACCTTCGGATGAAAATTGCCCTTGGAGCAGCAAAAGGGCTCGCATTTCTCCACAGTGACAAGGTTAAAGTCATCTACCGTGATTTCAAGACCTCTAATGTCCTTTTGGATGCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS0782A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGGACCGACTGGTGACAAGAGCCATGTCTCCACAAGGGTGATGGGGACTTATGGATATGCTGCACCAGAATACCTTGCAACAGGCCATCTGACCACCAAGAGCGACGTCTATAGCTTTGGAGTTGTGCTGCTAGAGATGCTATCAGGACGACGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTGGAGTGGGCTAGGCCATACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGGTTGGG GGGCAGTACTCCCTTGCCAAGGCCCAGAAGG TGCAACACTGGCACTTCAATGCATCTCTGTGGGGGCCAAGAACAGGCCTAACATGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C22663               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGCAAATCCTCCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGCCAATGGATCGAAACCGTCATCGAAGGGGAANCCCCGCAAATGCGAGGCTGGTTTAAGTGAACAATCATATATCATATGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTATATCTGCATGCATTCAGTTCAGTGCATTGTGGATTGTACAGTTTATATCTAGTTCTAATGCTGCGAAATTTTTGTTCGAGGCAACAGATGTGCCCAGATCCAGTTTTTCCTGATTTTTAAATCTACAAGCTGCCCCAGATCATATTTTTGAGTTCTAAAAA]


>consensus_13156#0 TTCTAGAAGAAGGAGAAAGAAATCGAAAGGCAGCAGCTGATGGTTGCATGCTGTGCGTCG CTCTCATGCTCAAAAGGTCAACAGAGTTGAGTCCCTCAGCTAAGGCAGGCAAGCACGAGA GTCACAGATACATATCCCCTTTAATCTCCTCTCCCACCAATCCTTTGATCCATTCATCCC AACTTCTTCCATAGTACAAATCTCTTGCTCCCCTCCCTCTCATCTCCTATCTGTATCTAT TTCTATCTCTCTATCTCGTATCTCCTTGAAGAAGAACAGAGAGAGGATTGGGAGGAGTAG TAGGTAGTTGATTTAGTTTTGAGGAGCCGGAGAGGAGAGCAGGTGTCCTGGTTCGTGATT CGATTTCAGCTGTTCTGATCGCTTCTTGTGGCTTCTGTGCCGTGCTGGCCTCTCGTTCTT GAGCCTTTGTCGATTCGATTCCCGCGAAAAGGAGGCGTCTTTTTGTGAGTTAGGTGTGGT GCTTCTTGGGCTCTACTACCTCCGAGGTGAAGGTGTTGTTGTTGGTGGTGGTGGATTTTC GCCATGGGGAATTGCTGGGGCGCCAAGATCAGCTCGGAGAGCCCTTGCCGCAGCGCCTCC TCCCCTTCTGGGGGGACATCCAAGTATGCTAGCAACTCCAGTGTGTCTGCAGCCTCGGTG CCGCCAACACCACGGAGCGAGGATGAGATCCTGGAGGCAGCAAATGTCAAGGCCTTTGCC TTCAATGAGCTGAGGACTGCCACCAGAAACTTCCGGCCAGACAGTGTGCTTGGTGAGGGA GGCTTTGGATCAGTCTTCAAAGGGTGGATCGATGAGAAGACGCTCGCACCAACTAAGCCA GGCACAGGGATGGTCATTGCTGTAAAGAAGTTGAATCAGGAAGGCCACCAGGGTCACAGG GAATGGCTGGCTGAAGTGAATTATCTTGGACAGTTGTCACACCCATATCTTGTAAGGCTC GTTGGGTACTGCGTCGAAGATGAGCAGCGTCTTCTTGTTTATGAGTTCATGCCACGTGGT AGCTTGGAAAATCATCTTTTCAGGAGGAGTACGCATTTTCAGCCGCTCTCCTGGAACCTT CGGATGAAAATTGCCCTTGGAGCAGCAAAAGGGCTCGCATTTCTCCACAGTGACAAGGTT AAAGTCATCTACCGTGATTTCAAGACCTCTAATGTCCTTTTGGATGCGAACTATGATGCA AAGCTCTCTGATTTTGGGCTGGCAAAGGATGGACCGACTGGTGACAAGAGCCATGTCTCC ACAAGGGTGATGGGGACTTATGGATATGCTGCACCAGAATACCTTGCAACAGGCCATCTG ACCACCAAGAGCGACGTCTATAGCTTTGGAGTTGTGCTGCTAGAGATGCTATCAGGACGA CGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTGGAGTGGGCTAGGCCA TACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGGTTGGGCGGGCAGTAC TCCCTTGCCAAGGCCCAGAAGGCTGCAACACTGGCACTTCAATGCATCTCTGTGGAGGCC AAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAG GAGACAGGGGCAAATCCTCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGCAAT GGATCGAAACCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTGGTTTAAGTGAACAAT CATATATCATATGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGA CCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCA GCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTATATCTGCATGCAT TCAGTTCAGTGCATTGTGGATTGTACAGTTTATATCTAGTTCTAATGCTGCGAAATTTTT GTTCGAGGCAACAGATGTGCCCAGATCCAGTTTTTCCTGATTTTTAAATCTACAAGCTGC CCCAGATCATATTTTTGAGTTCTAAAAA



consensusID : consensus_13156#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 706
fasta sequence
                              [GCAACAGGCCATCTGACCACCAAGAGCGACGTCTATAGCTTTGGAGTTGTGCTGCTAGAGATGCTATCAGGACGACGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTGGAGTGGGCTAGGCCATACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGGTTGGGCGGGCAGTACTCCCTTGCCAAGGCCCAGAAGGCTGCAACACTGGCACTTCAATGCATCTCTGTGGAGGCCAAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAGGAGACAGGGGCAAATCCTCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGCAATGGATCGAAACCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTGGTTTAAGTGAACAATCATATATCATATGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTATATCTGCATGCATTCAGTTCAGTGCATTGTGGATTGTACAGTTTATATCTAGTTCTAATGCTGCGAAATTTTTGTTCGAGGCAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CB655460             [GCAACAGGCCATCTGACCACCAAGAGCGACGTCTATAGCTTTGGAGTTGTGCTGCTAGAGATGCTATCAGGACGACGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTGGAGTGGGCTAGGCCATACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGGTTGGGCGGGCAGTACTCCCTTGCCAAGGCCCAGAAGGCTGCAACACTGGCACTTCAATGCATCTCTGTGGAGGCCAAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAGGAGACAGGGGCAAATCCTCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGCAATGGATCGAAACCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTGGTTTAAGTGAACAATCATATATCATATGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTATATCTGCATGCATTCAGTTCAGTGCATTGTGGATTGTACAGTTTATATCTAGTTAAGGGGCTGCGAAATTTTTGTTCGAGGCAAAAAAAActttaa        ]
[-] EMBL CB646952             [                                                                  TCAGGACGACGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTGGAGTGGGCTAGGCCATACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGGTTGGGCGGGCAGTACTCCCTTGCCAAGGCCCAGAAGGCTGCAACACTGGCACTTCAATGCATCTCTGTGGAGGCCAAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAGGAGACAGGGGCAAATCCTCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGCAATGGATCGAAACCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTGGTTTAAGTGAACAATCATATATCATATGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAA                                                                                                                        ]
[-] EMBL CB670246             [                                                                                                                                       TACCTGATGAGCAAGGGGGGCATTTTCCGCATCCTGGACGCCCGGTTGGGGGGGCAGTATTCCTTTGCCAAGGCCCAGAAGGTTGCAACACTGGCATTTCAATGCATTTCTGTGGAGGCCAAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAGGAGACAGGGGCAAATCTTCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGCAATGGATGGAAACCGTCATCGAAGGGGAAGCCCGCAAATGGGAGGCTGGTTTAAGTGAACAATCATATATCATATGATCAGATATAGTTCTGTTGAGATGAGTAGTGTAGGTTTTTAGAGGGCCCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCAGCTTTTAGTCAGAGTTTTGTTTGAAGTAAAAAGTATGTGGTCGCCTATATTTGCATGCATTCAGTTCAGTGCATTGTGGATTGTCCAGTTTATATTTAGTTTTAATGCTGGGAAATTTTT                               ]
[+] EMBL CF330341             [                                                                                                                                                                                                                                                                      GGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAGGAGACAGGGGCAAATCCTCAGCTGCAGAAGAATTCCAGCAGCAAGAACGCAGGCAGCAATGGATCGAAACCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTGGTTTAAGTGAACAATCATATATCATATGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTATATCTGCATGCATTCAGTTCAGTGCATTGTGGATTGTACAGTTTATATCTAGTTCTAATGCTGCGAAATTTTTGTTCGAGGCAAAAAAAAAAAAA         ]
[-] EMBL CF292400             [                                                                                                                                                                                                                                                                                                                          GGAGACAGGGGCAAATCCTCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGCAATGGATCGAACCCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTGGTTTAAGTGACCAATCATATATCATATGATCAGATATAGATCTGTTGAAATGAGTAGTGTAGGCTTTTAGAGGGCCCTGTAAAAAAAAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCAGCTTCTAGTCAGAGTTTTGTTTAAAGTAAAAAGTATGTGGTCGCCTATATCTGCATGCATTCAGTTCAGTGCATTGTGGATTGTCCAGTTTATATCTAGTTCTAATGCTGCGAAATTTTTGTTCGAGGCAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13156#1 GCAACAGGCCATCTGACCACCAAGAGCGACGTCTATAGCTTTGGAGTTGTGCTGCTAGAG ATGCTATCAGGACGACGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTG GAGTGGGCTAGGCCATACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGG TTGGGCGGGCAGTACTCCCTTGCCAAGGCCCAGAAGGCTGCAACACTGGCACTTCAATGC ATCTCTGTGGAGGCCAAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAG CTCCAGGATTCCAAGGAGACAGGGGCAAATCCTCAGCTGCAGAAGAAGTCCAGCAGCAAG AACGCAGGCAGCAATGGATCGAAACCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTG GTTTAAGTGAACAATCATATATCATATGATCAGATATAGATCTGTTGAGATGAGTAGTGT AGGCTCTTAGAGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTT TTAGTTGTTTTTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCC TATATCTGCATGCATTCAGTTCAGTGCATTGTGGATTGTACAGTTTATATCTAGTTCTAA TGCTGCGAAATTTTTGTTCGAGGCAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_13156#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence
                              [AAGGACGAGCCAAGGGGGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761885             [AAGGACGAGCCAAGGGGGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13156#2 AAGGACGAGCCAAGGGGGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAG AGGGACCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTT TTGCAGCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTAAAAAAAAA AAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13156#0      TTCTAGAAGAAGGAGAAAGAAATCGAAAGGCAGCAGCTGATGGTTGCATGCTGTGCGTCG 60
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      CTCTCATGCTCAAAAGGTCAACAGAGTTGAGTCCCTCAGCTAAGGCAGGCAAGCACGAGA 120
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      GTCACAGATACATATCCCCTTTAATCTCCTCTCCCACCAATCCTTTGATCCATTCATCCC 180
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      AACTTCTTCCATAGTACAAATCTCTTGCTCCCCTCCCTCTCATCTCCTATCTGTATCTAT 240
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      TTCTATCTCTCTATCTCGTATCTCCTTGAAGAAGAACAGAGAGAGGATTGGGAGGAGTAG 300
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      TAGGTAGTTGATTTAGTTTTGAGGAGCCGGAGAGGAGAGCAGGTGTCCTGGTTCGTGATT 360
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      CGATTTCAGCTGTTCTGATCGCTTCTTGTGGCTTCTGTGCCGTGCTGGCCTCTCGTTCTT 420
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      GAGCCTTTGTCGATTCGATTCCCGCGAAAAGGAGGCGTCTTTTTGTGAGTTAGGTGTGGT 480
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      GCTTCTTGGGCTCTACTACCTCCGAGGTGAAGGTGTTGTTGTTGGTGGTGGTGGATTTTC 540
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      GCCATGGGGAATTGCTGGGGCGCCAAGATCAGCTCGGAGAGCCCTTGCCGCAGCGCCTCC 600
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      TCCCCTTCTGGGGGGACATCCAAGTATGCTAGCAACTCCAGTGTGTCTGCAGCCTCGGTG 660
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      CCGCCAACACCACGGAGCGAGGATGAGATCCTGGAGGCAGCAAATGTCAAGGCCTTTGCC 720
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      TTCAATGAGCTGAGGACTGCCACCAGAAACTTCCGGCCAGACAGTGTGCTTGGTGAGGGA 780
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      GGCTTTGGATCAGTCTTCAAAGGGTGGATCGATGAGAAGACGCTCGCACCAACTAAGCCA 840
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      GGCACAGGGATGGTCATTGCTGTAAAGAAGTTGAATCAGGAAGGCCACCAGGGTCACAGG 900
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      GAATGGCTGGCTGAAGTGAATTATCTTGGACAGTTGTCACACCCATATCTTGTAAGGCTC 960
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      GTTGGGTACTGCGTCGAAGATGAGCAGCGTCTTCTTGTTTATGAGTTCATGCCACGTGGT 1020
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      AGCTTGGAAAATCATCTTTTCAGGAGGAGTACGCATTTTCAGCCGCTCTCCTGGAACCTT 1080
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      CGGATGAAAATTGCCCTTGGAGCAGCAAAAGGGCTCGCATTTCTCCACAGTGACAAGGTT 1140
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      AAAGTCATCTACCGTGATTTCAAGACCTCTAATGTCCTTTTGGATGCGAACTATGATGCA 1200
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      AAGCTCTCTGATTTTGGGCTGGCAAAGGATGGACCGACTGGTGACAAGAGCCATGTCTCC 1260
consensus_13156#1      ------------------------------------------------------------
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      ACAAGGGTGATGGGGACTTATGGATATGCTGCACCAGAATACCTTGCAACAGGCCATCTG 1320
consensus_13156#1      ---------------------------------------------GCAACAGGCCATCTG 15
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      ACCACCAAGAGCGACGTCTATAGCTTTGGAGTTGTGCTGCTAGAGATGCTATCAGGACGA 1380
consensus_13156#1      ACCACCAAGAGCGACGTCTATAGCTTTGGAGTTGTGCTGCTAGAGATGCTATCAGGACGA 75
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      CGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTGGAGTGGGCTAGGCCA 1440
consensus_13156#1      CGAGCACTGGACAAGAACCGCCCAACCGGGGAGCACAATCTGGTGGAGTGGGCTAGGCCA 135
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      TACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGGTTGGGCGGGCAGTAC 1500
consensus_13156#1      TACCTGATGAGCAAGCGGCGCATCTTCCGCATCCTGGACGCCCGGTTGGGCGGGCAGTAC 195
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      TCCCTTGCCAAGGCCCAGAAGGCTGCAACACTGGCACTTCAATGCATCTCTGTGGAGGCC 1560
consensus_13156#1      TCCCTTGCCAAGGCCCAGAAGGCTGCAACACTGGCACTTCAATGCATCTCTGTGGAGGCC 255
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      AAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAG 1620
consensus_13156#1      AAGAACAGGCCTAACATGGAGCAGGTTGTTGCTGTATTAGAACAGCTCCAGGATTCCAAG 315
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      GAGACAGGGGCAAATCCTCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGCAAT 1680
consensus_13156#1      GAGACAGGGGCAAATCCTCAGCTGCAGAAGAAGTCCAGCAGCAAGAACGCAGGCAGCAAT 375
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      GGATCGAAACCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTGGTTTAAGTGAACAAT 1740
consensus_13156#1      GGATCGAAACCGTCATCGAAGGGGAAGCCCGCAAATGCGAGGCTGGTTTAAGTGAACAAT 435
consensus_13156#2      ------------------------------------------------------AAGGAC 6
                                                                             **  * 

consensus_13156#0      CATATATCATATGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGA 1800
consensus_13156#1      CATATATCATATGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGA 495
consensus_13156#2      GAGCCAA-GGGGGATCAGATATAGATCTGTTGAGATGAGTAGTGTAGGCTCTTAGAGGGA 65
                        *   *      ************************************************

consensus_13156#0      CCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCA 1860
consensus_13156#1      CCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCA 555
consensus_13156#2      CCTGTAAAGAAGAGGAGAGTTGTGAATCCTTGGTGCTTGCCTGTTTTAGTTGTTTTTGCA 125
                       ************************************************************

consensus_13156#0      GCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTATATCTGCATGCAT 1920
consensus_13156#1      GCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTATATCTGCATGCAT 615
consensus_13156#2      GCTTCTAGTCAGAGTCTTGTCTGAAGTAAAAAGTATGTGGTCGCCTAAAAAAAAAAAAAA 185
                       *********************************************** *     *   * 

consensus_13156#0      TCAGTTCAGTGCATTGTGGATTGTACAGTTTATATCTAGTTCTAATGCTGCGAAATTTTT 1980
consensus_13156#1      TCAGTTCAGTGCATTGTGGATTGTACAGTTTATATCTAGTTCTAATGCTGCGAAATTTTT 675
consensus_13156#2      AAAAAAAAA--------------------------------------------------- 194
                         *    *                                                    

consensus_13156#0      GTTCGAGGCAACAGATGTGCCCAGATCCAGTTTTTCCTGATTTTTAAATCTACAAGCTGC 2040
consensus_13156#1      GTTCGAGGCAAAAAAAAAAAAAAAAAAAAAA----------------------------- 706
consensus_13156#2      ------------------------------------------------------------
                                                                                   

consensus_13156#0      CCCAGATCATATTTTTGAGTTCTAAAAA 2068
consensus_13156#1      ----------------------------
consensus_13156#2      ----------------------------
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)