These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2970 fasta sequence [TGTGACCTACTCTCCCCTCACCCCTTCATCAATTCGGCTCAGAGGCTGCTCCTCCTCAGTCCTGAGTCTCCTGTCCTCATCTCCATTTTGTTTTCTCCTCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGGTGGAGTGCAGTGCAGAGATTCAAGAAGTTCAAGATCGAACAGGCCTGCTGGTATGAACCCTGTTCATGTTTTTTGCTTGCTCTGTGTAATCTCTCTGGGCTCTGGCCATCTGGTGCTGGAGAGATTGGAGATTTGCTGCATAATCATTGGTTCATTACTACCAGTTGTTTGTTGAAGCTCCATTAATTGGGGATTCAGTGGTTCTTGTTTTGGTATTTCCTCTTACCATTTCTTAGGGTGGTTTTGGTTGATGTATTTTCCCACAAATTCATTCCATGCGTGGAGTTCTTGATGGCTAATCCATAGTGGTTTCAGGCTTTCAGCTGCTATTCTTCTTTTTGTTTTTTCTCCTCCCCCAAATTGTCTGCTGTATGGAACAGAGAGCAGTTCATTATGTTTTCTGGATGCTCTTGTATGCCTTTTTTTAATCAAACTGTCAGCTTCTGTTCTCTGTCCATGCTTCTTCTGGGCTTTGACCTGAAAGATTGTGGTTTAGAACATTAAATCTGCACCCCAAAAACCATATATTGTCCGACATGCAGAAGTGGAAATGTGAGCTCTTGTTTAATGCTGCTCATTTGTTGCCTCTTTTCAAGAAAATGAAAATTTGTTACAATTGCGTGGTCTAGTTCTTGTTTTCTTCCATCCCTGTATTAGATAAGGAGTTTGGTAGGCACTGTCACATGATTTTGTGCCGCAATTGATTTTATTCATTAGATTAGTAACCTAAGGAATCCAAGAACATTAGGGTACATTAATAAAATGCAAAGAAACAGGGACAGAAGAGAGTAGGTTCTTTACTTTGCCCAGTTGGCATCCCCTGAAGTGATGCTTGATGCTTCCTTCCATTTTGATTATCTCTTGCTGCTGTTGGTGGTAAATCATTATTATTAGTACTACCTTTTTTATTTTTCGGAAGAAGAAAAAGAGGAACAAGCCAATGTGGCCTACATAATATGTGGTCTAGAAAGTTGGCATCAGTAGTGTGTTGATGCAATTTGAGGAAATTAAGGCAGAAAGGAAGGGACAGGAAAAGGGGCTGAAAGGTTTGCTTGAGCATAGTGCATCTCCACACCTTAAAATTGCTGGTCAAATTGTCCTTAAAATCGTTTATATCACGCAGACGGCATATCGTTCTCGACATTGCCTTCCTTAACTCCTGTGTTAATTCGACCACAACTTTAGAACAGCTTGTTGAGATTTCTTAATCCCAGTGTTGTATGTCAACATTGCATTGATTGTAGTATTATTATGAGAAGATTAGATACTGTAACCCCTCCAGAGAGTGACATCCATTGCCTTCTGTTACTGGATTTCTGCCAATTCTTAGTTAGATTTATGGATAAAAAGTTTTTAACCAAGTAGACTTAACAGGACCAAAGGTTGAATTTGTTCACCTAAGAAAAATGTACAATTTGTTGAACAAACAGCACAATTCTTGAATGAGGAGATTTTTAGTAGTCAGGTTTGTTGTTTGGATATCATAGTTTTTGAATGAGGAGAACATATTGGTTGGATTTACTGCGTGGACATCACAATTATTGAATTTGGAGAACAAATTGGTTAGATTTGTTGTGTGGATATCATACTTCTTGAATTAGAAGACCAAACTAGTTGTTTCTTTGAACAAATTGGTTAGAATTATTTTTTTTTTAAAAAAATCATTTTTCCCTTCATGAATTAGGAACAGACAGATTGATGCCCATGTTACCATGGTGGTGTCTGACTCATTGCAGTCTTATCTTTTTACACTCTCTAGTTTTCCCAAGCTGCAATCATGGTGGCCAAGTGCATGCCATGATGCACCTCTCATATACCACCATCTCTGCATGCTCAAGAACATCATGATTTTTTGTTCTTCTTGTCACCAACTTTTTTTTTGTTTTTCCCCCTAACTTCTTTTCACCCTTGCAACGCACTTCTCACTCGTAGCTTTAGTTTTCCTCTTGTCAGTAGCATATGTTTGTTTAGTTGTGATAAATTATCTTTTTTTTCCAGATCATGCCTTGTGCTGCGGCCGAGCTCGCCAATGGCGAGGCGGCGGCAGCAGCAGCATGCGCGGTGAAGGTCGGCACG-ACCGGCACCATCGGCTCGCTGATGACGAGGGAGCTGGAGGCCATCAAGGCCGCGCCGCCGCACGCCA-CAGCCGCGGCGACGACGCCGCGGCGGCTGAGGCGGCAGAGCAGCCCGGTGTCGGTGCCATGCGGAGCCAGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTCGTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCAGCGGGCGGCGCACTGACCGCGTGAGCGCCGAGGAGTCGTCGGCGTGCAAGACGGCGGCGTGCAGGAGGAGCTCTAGTACCACGCCGGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAAGAAGGCGGCGGCGAGGGGGCGCCGCGGCGTCGGCGGCGTGGAGGTGGTGGACGTGAGGTGCGGGAACCCGATGAGCAGCCGGCTGAGGAGGCTGGGATTCTCCAAGCTGTCGGAGACGTTCGCGTGAGCAGAATCAGATCGTCTTCAGTCCTGACGGCGAGCTGTGTCGCGAATTGCAATTCGGAATTGCATTATGTTTGCTATAGTAATTATATTGTTGTTATTAAAATTTTCTTTTGCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAGTTAATTTATGAGAAGCGTTTTGCCATCGTCGCAATGCAAGTTCTTCGTGGTGATGTGTATGATGTACCCGTAATTGCGTATTTTAACTTTTGGAGTGAATGTCTCCTCGTTTTAAAAAA] [+] EMBL AK072131 [TGTGACCTACTCTCCCCTCACCCCTTCATCAATTCGGCTCAGAGGCTGCTCCTCCTCAGTCCTGAGTCTCCTGTCCTCATCTCCATTTTGTTTTCTCCTCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGGTGGAGTGCAGTGCAGAGATTCAAGAAGTTCAAGATCGAACAGGCCTGCTGGTATGAACCCTGTTCATGTTTTTTGCTTGCTCTGTGTAATCTCTCTGGGCTCTGGCCATCTGGTGCTGGAGAGATTGGAGATTTGCTGCATAATCATTGGTTCATTACTACCAGTTGTTTGTTGAAGCTCCATTAATTGGGGATTCAGTGGTTCTTGTTTTGGTATTTCCTCTTACCATTTCTTAGGGTGGTTTTGGTTGATGTATTTTCCCACAAATTCATTCCATGCGTGGAGTTCTTGATGGCTAATCCATAGTGGTTTCAGGCTTTCAGCTGCTATTCTTCTTTTTGTTTTTTCTCCTCCCCCAAATTGTCTGCTGTATGGAACAGAGAGCAGTTCATTATGTTTTCTGGATGCTCTTGTATGCCTTTTTTTAATCAAACTGTCAGCTTCTGTTCTCTGTCCATGCTTCTTCTGGGCTTTGACCTGAAAGATTGTGGTTTAGAACATTAAATCTGCACCCCAAAAACCATATATTGTCCGACATGCAGAAGTGGAAATGTGAGCTCTTGTTTAATGCTGCTCATTTGTTGCCTCTTTTCAAGAAAATGAAAATTTGTTACAATTGCGTGGTCTAGTTCTTGTTTTCTTCCATCCCTGTATTAGATAAGGAGTTTGGTAGGCACTGTCACATGATTTTGTGCCGCAATTGATTTTATTCATTAGATTAGTAACCTAAGGAATCCAAGAACATTAGGGTACATTAATAAAATGCAAAGAAACAGGGACAGAAGAGAGTAGGTTCTTTACTTTGCCCAGTTGGCATCCCCTGAAGTGATGCTTGATGCTTCCTTCCATTTTGATTATCTCTTGCTGCTGTTGGTGGTAAATCATTATTATTAGTACTACCTTTTTTATTTTTCGGAAGAAGAAAAAGAGGAACAAGCCAATGTGGCCTACATAATATGTGGTCTAGAAAGTTGGCATCAGTAGTGTGTTGATGCAATTTGAGGAAATTAAGGCAGAAAGGAAGGGACAGGAAAAGGGGCTGAAAGGTTTGCTTGAGCATAGTGCATCTCCACACCTTAAAATTGCTGGTCAAATTGTCCTTAAAATCGTTTATATCACGCAGACGGCATATCGTTCTCGACATTGCCTTCCTTAACTCCTGTGTTAATTCGACCACAACTTTAGAACAGCTTGTTGAGATTTCTTAATCCCAGTGTTGTATGTCAACATTGCATTGATTGTAGTATTATTATGAGAAGATTAGATACTGTAACCCCTCCAGAGAGTGACATCCATTGCCTTCTGTTACTGGATTTCTGCCAATTCTTAGTTAGATTTATGGATAAAAAGTTTTTAACCAAGTAGACTTAACAGGACCAAAGGTTGAATTTGTTCACCTAAGAAAAATGTACAATTTGTTGAACAAACAGCACAATTCTTGAATGAGGAGATTTTTAGTAGTCAGGTTTGTTGTTTGGATATCATAGTTTTTGAATGAGGAGAACATATTGGTTGGATTTACTGCGTGGACATCACAATTATTGAATTTGGAGAACAAATTGGTTAGATTTGTTGTGTGGATATCATACTTCTTGAATTAGAAGACCAAACTAGTTGTTTCTTTGAACAAATTGGTTAGAATTATTTTTTTTTTAAAAAAATCATTTTTCCCTTCATGAATTAGGAACAGACAGATTGATGCCCATGTTACCATGGTGGTGTCTGACTCATTGCAGTCTTATCTTTTTACACTCTCTAGTTTTCCCAAGCTGCAATCATGGTGGCCAAGTGCATGCCATGATGCACCTCTCATATACCACCATCTCTGCATGCTCAAGAACATCATGATTTTTTGTTCTTCTTGTCACCAACTTTTTTTTTGTTTTTCCCCCTAACTTCTTTTCACCCTTGCAACGCACTTCTCACTCGTAGCTTTAGTTTTCCTCTTGTCAGTAGCATATGTTTGTTTAGTTGTGATAAATTATCTTTTTTTTCCAGATCATGCCTTGTGCTGCGGCCGAGCTCGCCAATGGCGAGGCGGCGGCAGCAGCAGCATGCGCGGTGAAGGTCGGCACG ACCGGCACCATCGGCTCGCTGATGACGAGGGAGCTGGAGGCCATCAAGGCCGCGCCGCCGCACGCCA CAGCCGCGGCGACGACGCCGCGGCGGCTGAGGCGGCAGAGCAGCCCGGTGTCGGTGCCATGCGGAGCCAGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTCGTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCAGCGGGCGGCGCACTGACCGCGTGAGCGCCGAGGAGTCGTCGGCGTGCAAGACGGCGGCGTGCAGGAGGAGCTCTAGTACCACGCCGGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAAGAAGGCGGCGGCGAGGGGGCGCCGCGGCGTCGGCGGCGTGGAGGTGGTGGACGTGAGGTGCGGGAACCCGATGAGCAGCCGGCTGAGGAGGCTGGGATTCTCCAAGCTGTCGGAGACGTTCGCGTGAGCAGAATCAGATCGTCTTCAGTCCTGACGGCGAGCTGTGTCGCGAATTGCAATTCGGAATTGCATTATGTTTGCTATAGTAATTATATTGTTGTTATTAAAATTTTCTTTTGCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAG ] [+] EMBL AK120609 [ GTCTCCTGTCCTCATCTCCATTTTGTTTTCTCCTCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGGTGGAGTGCAGTGCAGAGATTCAAGAAGTTCAAGATCGAACAGGCCTGCTGGTATGAACCCTGTTCATGTTTTTTGCTTGCTCTGTGTAATCTCTCTGGGCTCTGGCCATCTGGTGCTGGAGAGATTGGAGATTTGCTGCATAATCATTGGTTCATTACTACCAGTTGTTTGTTGAAGCTCCATTAATTGGGGATTCAGTGGTTCTTGTTTTGGTATTTCCTCTTACCATTTCTTAGGGTGGTTTTGGTTGATGTATTTTCCCACAAATTCATTCCATGCGTGGAGTTCTTGATGGCTAATCCATAGTGGTTTCAGGCTTTCAGCTGCTATTCTTCTTTTTGTTTTTTCTCCTCCCCCAAATTGTCTGCTGTATGGAACAGAGAGCAGTTCATTATGTTTTCTGGATGCTCTTGTATGCCTTTTTTTAATCAAACTGTCAGCTTCTGTTCTCTGTCCATGCTTCTTCTGGGCTTTGACCTGAAAGATTGTGGTTTAGAACATTAAATCTGCACCCCAAAAACCATATATTGTCCGACATGCAGAAGTGGAAATGTGAGCTCTTGTTTAATGCTGCTCATTTGTTGCCTCTTTTCAAGAAAATGAAAATTTGTTACAATTGCGTGGTCTAGTTCTTGTTTTCTTCCATCCCTGTATTAGATAAGGAGTTTGGTAGGCACTGTCACATGATTTTGTGCCGCAATTGATTTTATTCATTAGATTAGTAACCTAAGGAATCCAAGAACATTAGGGTACATTAATAAAATGCAAAGAAACAGGGACAGAAGAGAGTAGGTTCTTTACTTTGCCCAGTTGGCATCCCCTGAAGTGATGCTTGATGCTTCCTTCCATTTTGATTATCTCTTGCTGCTGTTGGTGGTAAATCATTATTATTAGTACTACCTTTTTTATTTTTCGGAAGAAGAAAAAGAGGAACAAGCCAATGTGGCCTACATAATATGTGGTCTAGAAAGTTGGCATCAGTAGTGTGTAGATGCAATTTGAGGAAATTAAGGCAGAAAGGAAGGGACAGGAAAAGGGGCTGAAAGGTTTGCTTGAGCATAGTGCATCTCCACACCTTAAAATTGCTGGTCAAATTGTCCTTAAAATCGTTTATATCACGCAGACGGCATATCGTTTTCGACATTGCCTTCCTTAACTCCTGTGTTAATTCGACCACAACTTTAGAACAGCTTGTTGAGATTTCTTAATCCCAGTGTTGTATGTCAACATTGCATTGATTGTAGTATTATTATGAGAAGATTAGATACTGTAACCCCTCCAGAGAGTGACATCCATTGCCTTCTGTTACTGGATTTCTGCCAATTCTTAGTTAGATTTATGGATAAAAAGTTTTTAACCAAGTAGACTTAACAGGACCAAAGGTTGAATTTGTTCACCTAAGAAAAATGTACAATTTGTTGAACAAACAGCACAATTCTTGAATGAGGAGATTTTTAGTAGTCAGGTTTGTTGTTTGGATATCATAGTTTTTGAATGAGGAGAACATATTGGTTGGATTTACTGCGTGGACATCACAATTATTGAATTTGGAGAACAAATTGGTTAGATTTGTTGTGTGGATATCATACTTCTTGAATTAGAAGACCAAACTAGTTGTTTCTTTGAACAAATTGGTTAGAATTATTTTTTTTTTAAAAAAATCATTTTTCCCTTCATGAATTAGGAACAGACAGATTGATGCCCATGTTACCATGGTGGTGTCTGACTCATTGCAGTCTTATCTTTTTACACTCTCTAGTTTTCCCAAGCTGCAATCATGGTGGCCAAGTGCATGCCATGATGCACCTCTCATATACCACCATCTCTGCATGCTCAAGAACATCATGATTTTTTGTTCTTCTTGTCACCAAC TTTTTTTTGTTTTTCCCCCTAACTTCTTTTCACCCTTGCAACGCACTTCTCACTCGTAGCTTTAGTTTTCCTCTTGTCAGTAGCATATGTTTGTTTAGTTGTGATAAATTATCTTTTTTTTCCAGATCATGCCTTGTGCTGCGGCCGAGCTCGCCAATGGCGAGGCGGCGGCAGCAGCAGCATGCGCGGTGAAGGTCGGCACG ACCGGCACCATCGGCTCGCTGATGACGAGGGAGCTGGAGGCCATCAAGGCCGCGCCGCCGCACGCCA CAGCCGCGGCGACGACGCCGCGGCGGCTGAGGCGGCAGAGCAGCCCGGTGTCGGTGCCATGCGGAGCCAGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTCGTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCAGCGGGCGGCGCACTGACCGCGTGAGCGCCGAGGAGTCGTCGGCGTGCAAGACGGCGGCGTGCAGGAGGAGCTCTAGTACCACGCCGGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAAGAAGGCGGCGGCGGGGGGGCGCCGCGGCGTCGGCGGCGTGGAGGTGGTGGACGTGAGGTGCGGGAACCCGATGAGCAGCCGGCTGAGGAGGCTGGGATTCTCCAAGCTGTCGGAGACGTTCGCGTGAGCAGAATCAGATCGTCTTCAGTCCTGACGGCGAGCTGTGTCGCGAATTGCAATTCGGAATTGCATTATGTTTGCTATAGTAATTATATTGTTGTTATTAAAATTTTCTTTTGCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAGTTAATTTATGAGAAGCGTTTTGCCATC ] [+] EMBL AU077504 [ TCGGCACGAACCGGCACCATCGGCTCGCTGATGACGAGGGAGCTGGA GCCATCAAGGCCGCGCCGCCGCACGCCANCAG CGCGGCGACGACGCCGCGGCGGCTGAGGCTGCAGAGCAGCCCGGTGTCGGTGCCATGCGGAGCCAGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTCGTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCAGCGGGCGGCGCACTGACCGCGTGAGCGCCGAGGAGTCGTCGGCGTGCAAGACGGCGGCGTGCAGGAGGAGCTCTAGTACCACGCCGGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAAGAAGGCGGCGGCGAGGGGGCGCCGCGGCGTCGGCGGCGTGGAGGTGGTGGACGTGAGGTGCGGGAACCCGATGAGCAGCCGGCTGAGGAGGCTGGGATTCTCCAAGCTGTCGGAGACGTTCGCGTGAGCAGAATCAGATCGTCTTCAGTCCTGACGGCGAGCTGTGTCGCGAATTGCAATTCGGAATTGCATTATGTTTGCTATAGTAATTATATTGTTGTTATTAAAATTTTCTTTTGCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAGTTAATTTATGAGAAGCGTTTTGCCATCGTCGCAAaaaa ] [+] EMBL AU064430 [ CAGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTCGTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCAGCGGGCGGCGCACTGACCGCGTGAGCGCCGAGGAGTCGTCGGCGTGCAAGACGGCGGCGTGCAGGAGGAGCTCTAGTACCACGCCGGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAAGAAGGCGGCGGCGAGGGGGCGCCGCGGCGTCGGCGGCGTGGAGGTGGTGGACGTGAGGTGCGGGAACCCGATGAGCAGCCGGCTGAGGAGGCTGGGATTCTCCAAGCTGTCGGAGACGTTCGCGTGAGCAGAATCAGATCGTCTTCAGTCCTGACGGCG ] [+] EMBL AU166062 [ CGTGCAAGACGNCGGCGTGCAGGAGGAGCTCTAGTACCACGCC GCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAAGAAGGCGGCGGCGAGGGGGCGCCGCGGCGTCGGCGGCGTGGAGGTGGTGGACGTGAGGTGCGGGAACCCGATGAGCAGCCGGCTGAGGAGGCTGGGATTCTCCAAGCTGTCGGAGACGTTCGCGTGAGCAGAATCAGATCGTCTTCAGTCCTGACGGCGAGCTGTGTCGCGAATTGCAATTCGGAATTGCATTATGTTTGCTATAGTAATTATATTGTTGTTATTAAAATTTTCTTTTGCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAGTTAATTTATGAGAAGCGTTTTGCCATCGTCGCAATGCAAaaaaaa ] [+] EMBL CF308423 [ CTCCAAGCTGTCGGAGACGTTCGCGTGAGCAGAATCAGATCGTCTTCAGTCCTGACGGCGAGCTGTGTCGCGAATTGCAATTCGGAATTGCATTATGTTTGCTATAGTAATTATATTGTTGTTATTAAAATTTTCTTTTGCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAGTTAATTTATGAGAAGCGTTTTGCCATCGTCGCAATGCAAGTTCTTCGTGGTGATGTGTATGATGTACCCGTAATTGCGTATTTTAACTTTTGGAGTGAATGTCTCCTCGTTTTAAAAA ] [-] EMBL CF308424 [ TCCAAGCTGTCGGAGACGTTCGCGTGAGCAGAATCAGATCGTCTTCAGTCCTGACGGCGAGCTGTGTCGCGAATTGCAATTCGGAATTGCATTATGTTTGCTATAGTAATTATATTGTTGTTATTAAAATTTTCTTTTGCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAGTTAATTTATGAGAAGCGTTTTGCCATCGTCGCAATGCAAGTTCTTCGTGGTGATGTGTATGATGTACCCGTAATTGCGTATTTTAACTTTTGGAGTGAATGTCTCCTCGTTTTAAAAAA] consensusID : consensus_13157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 926 fasta sequence [CCCCTCACCCCTTCATCAATTCGGCTCAGAGGCTGCTCCTCCTCAGTCCTGAGTCTCCTGTCCTCATCTCCATTTTGTTTTCTCCTCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGGTGGAGTGCAGTGCAGAGATTCAAGAAGTTCAAGATCGAACAGGCCTGCTGATCATGCCTTGTGCTGCGGCCGAGCTCGCCAATGGCGAGGCGGCGGCAGCAGCAGCATGCGCGGTGAAGGTCGGCACGA-CGNCACCATCGGCTCGCTGATGACGAGGGAGCTGGAGGCCATCAAGGCCGCGCCGCCGCACGCCACAGCCGCGGCGACGACGC--CGGCGGNCTGAGGCGGCAGAGCAGCCCGGTGTCGGTGCCATGCGGA-NCAGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTCGTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCAGCGGGCGGCGCACTGACCGCGTGAGCGCCGAG-GAGTCGTCGGCGTGCAAGACGGCGGCGTGCAGGAGGAGCTCTAGTACCACGCCGGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAAAAAGGCGGCGGCGAGGGGGCGCCGCGGCGTCGGCGGCGTGGAGGTGGTGGACGTGAGGTGCGGGAACCCGATGAGCAGCCGGCTGGAGGAGGCTGGGATTCTCCAAGCTGTCGGAGACGTTCGCGTGAGCAGAMATCAGATCGTCTTCAGTCCTGACGGCGAGCTGTGTCGCGAATTSSAATBCGGAATBGCATTATGTTTGATATAGTAATTATATTGTTGTTATTAAAATKBTCTBTTGCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAGTTAATTTATGAGAAGCGTTTTGCCATAAAAAAAAAAA] [+] EMBL OSS15458A [CCCCTCACCCCTTCATCAATTCGGCTCAGAGGCTGCTCCTCCTCAGTCCTGAGTCTCCTGTCCTCATCTCCATTTTGTTTTCTCCTCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGGTGGAGTGCAGTGCAGAGATTCAAGAAGTTCAAGATCGAACAGGCCTGCTGATCATGCCTTGTGCTGCGGNCGAGCTCGCCAATGGCGAGGCGGCGGCA NAGCAGCATGCGCG ] [+] EMBL AU077505 [ CCTCATCTCCATTTTGTTTTCTCCTCCTCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTGGTGGAGTGCAGTGCAGAGATTCAAGAAGTTCAAGATCGAACAGGCCTGCTGATCATGCCTTGAGCTGCGGCCGAGCTCGCCAATGGCGAGGCGGCGGCAGCAGCAGCATGCGCGGTGAAGGTCGGCACGA CGNCACCATCGGCTCGCTGATGACGAGGGAGCTGGAGGCCATCAAGGCCGCGCCGCCGCACGCCACAGCCGCGGCGACGACGC CGGCGGNCTGAGGCGGCAGAGCAGCCCGGTGTCGGTGCCATGCGGA NCAGCCCGAGGAAGATCGC ] [+] EMBL CF325752 [ AGAGATTCAAGAAGTTCAAGATCGAACAGGCCTGCTGATCATGCCTTGTGCTGCGGCCGAGCTCGCCAATGGCGAGGCGGCGGCAGCAGCAGCATGCGCGGTGAAGGTCGGCACGACCGGCACCATCGGCTCGCTGATGACGAGGGAGCTGGAGGCCATCAAGGCCGCGCCGCCGCACGCCACAGCCGCGGCGACGACGCCGCGGCGG CTGAGGCGGCAGAGCAGCCCGGTGTCGGTGCCATGCGGAGCCAGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTCGTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCAGCGGGCGGCGCACTGACCGCGTGAGCGCCGAG GAGTCGTCGGCGTGCAAGACGGCGGCGTGCAGGAGGAGCTCTAGTACCACGCCGGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAAAAAGGCGGCGGCGAGGGGGC ] [+] EMBL AA754282 [ cGAG GSCGAGVGVGTCGTCGGCGTGCAAGACGGCGGCGTGCAGGAGGAGCTCTAGTACCAVGCCGGCCAGCTSCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAAGAAGGCGGCGGCGAGGGGGCGCCGCGGCGTCGGCGGCGTGGAGGTGGTGGACGTGAGGTGCGGGAACCCGATGAGCAGCCGGCTGGAGGAGGCTGGGATTCTCCAAGCTGTCGGAGACGTTCGCGTGAGCAGAMATCAGATCGTCTTCAGTCCTGACGGCGAGCTGTGTCGCGAATTSSAATBCGGAATBGCATTATGTTTGATATAGTAATTATATTGTTGTTATTAAAATKBTCTBTTGCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAGTTAATTTATGAGAAGCGTTTTGCCATAAAAAAAAAAA] consensusID : consensus_13157#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [CAGAAAGGAAGGGACAGGAAAAGGGGCTGAAAGATCATGCCTTGTGCTGCGGCCGAGCTCGCCCATGGCGAGGCGGCGGCNGCAGCAGCATGCGCGGTGAAGGTCGGCACGACCGGCACCATCGGCTCGCTGATGACGAGGGAGCTGGAGGCCATCANGGCCGCGCCGCCGCACGCCACAGCCGCGGCGACGACCCCCCGGCGGCTGAGGCGGCAGAGCAGCCCGGTGTCGGTGCCATGCGGAGCCAGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTCGTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCNGCGGGCGGCGCACTGACCGCGTGAGCGCCCAGGAGTCGTCGGCGTGCAAGACGGCNGCGTGCAGGAGGAGCTCTAGTACCACGCCGGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAAAAAAGCGGCGGCAAGGGGGCGCCGCGGCGTCCGCNGCNTGGAGGTGGTGGACGTGAGGTGCGGGAACCGATGAGCACCGGCTGAGGAGCTGGGATTCTCCAGCTGTCNGAGAGTTCGCGTGAGCAGAATCAGATC] [+] EMBL CA755029 [CAGAAAGGAAGGGACAGGAAAAGGGGCTGAAAGATCATGCCTTGTGCTGCGGCCGAGCTCGCCCATGGCGAGGCGGCGGCNGCAGCAGCATGCGCGGTGAAGGTCGGCACGACCGGCACCATCGGCTCGCTGATGACGAGGGAGCTGGAGGCCATCANGGCCGCGCCGCCGCACGCCACAGCCGCGGCGACGACCCCCCGGCGGCTGAGGCGGCAGAGCAGCCCGGTGTCGGTGCCATGCGGAGCCAGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTCGTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCNGCGGGCGGCGCACTGACCGCGTGAGCGCCCAGGAGTCGTCGGCGTGCAAGACGGCNGCGTGCAGGAGGAGCTCTAGTACCACGCCGGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAAAAAAGCGGCGGCAAGGGGGCGCCGCGGCGTCCGCNGCNTGGAGGTGGTGGACGTGAGGTGCGGGAACCGATGAGCACCGGCTGAGGAGCTGGGATTCTCCAGCTGTCNGAGAGTTCGCGTGAGCAGAATCAGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13157#0 TGTGACCTACTCTCCCCTCACCCCTTCATCAATTCGGCTCAGAGGCTGCTCCTCCTCAGT 60 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 CCTGAGTCTCCTGTCCTCATCTCCATTTTGTTTTCTCCTCCTCCTCCTCTCTCTCTCTCT 120 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 CTCTCTCTCTCTCTCTCTCTGTCTCTCTGGTGGAGTGCAGTGCAGAGATTCAAGAAGTTC 180 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 AAGATCGAACAGGCCTGCTGGTATGAACCCTGTTCATGTTTTTTGCTTGCTCTGTGTAAT 240 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 CTCTCTGGGCTCTGGCCATCTGGTGCTGGAGAGATTGGAGATTTGCTGCATAATCATTGG 300 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TTCATTACTACCAGTTGTTTGTTGAAGCTCCATTAATTGGGGATTCAGTGGTTCTTGTTT 360 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TGGTATTTCCTCTTACCATTTCTTAGGGTGGTTTTGGTTGATGTATTTTCCCACAAATTC 420 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 ATTCCATGCGTGGAGTTCTTGATGGCTAATCCATAGTGGTTTCAGGCTTTCAGCTGCTAT 480 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TCTTCTTTTTGTTTTTTCTCCTCCCCCAAATTGTCTGCTGTATGGAACAGAGAGCAGTTC 540 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 ATTATGTTTTCTGGATGCTCTTGTATGCCTTTTTTTAATCAAACTGTCAGCTTCTGTTCT 600 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 CTGTCCATGCTTCTTCTGGGCTTTGACCTGAAAGATTGTGGTTTAGAACATTAAATCTGC 660 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 ACCCCAAAAACCATATATTGTCCGACATGCAGAAGTGGAAATGTGAGCTCTTGTTTAATG 720 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 CTGCTCATTTGTTGCCTCTTTTCAAGAAAATGAAAATTTGTTACAATTGCGTGGTCTAGT 780 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TCTTGTTTTCTTCCATCCCTGTATTAGATAAGGAGTTTGGTAGGCACTGTCACATGATTT 840 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TGTGCCGCAATTGATTTTATTCATTAGATTAGTAACCTAAGGAATCCAAGAACATTAGGG 900 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TACATTAATAAAATGCAAAGAAACAGGGACAGAAGAGAGTAGGTTCTTTACTTTGCCCAG 960 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TTGGCATCCCCTGAAGTGATGCTTGATGCTTCCTTCCATTTTGATTATCTCTTGCTGCTG 1020 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TTGGTGGTAAATCATTATTATTAGTACTACCTTTTTTATTTTTCGGAAGAAGAAAAAGAG 1080 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 GAACAAGCCAATGTGGCCTACATAATATGTGGTCTAGAAAGTTGGCATCAGTAGTGTGTT 1140 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 GATGCAATTTGAGGAAATTAAGGCAGAAAGGAAGGGACAGGAAAAGGGGCTGAAAGGTTT 1200 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 GCTTGAGCATAGTGCATCTCCACACCTTAAAATTGCTGGTCAAATTGTCCTTAAAATCGT 1260 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TTATATCACGCAGACGGCATATCGTTCTCGACATTGCCTTCCTTAACTCCTGTGTTAATT 1320 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 CGACCACAACTTTAGAACAGCTTGTTGAGATTTCTTAATCCCAGTGTTGTATGTCAACAT 1380 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TGCATTGATTGTAGTATTATTATGAGAAGATTAGATACTGTAACCCCTCCAGAGAGTGAC 1440 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 ATCCATTGCCTTCTGTTACTGGATTTCTGCCAATTCTTAGTTAGATTTATGGATAAAAAG 1500 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TTTTTAACCAAGTAGACTTAACAGGACCAAAGGTTGAATTTGTTCACCTAAGAAAAATGT 1560 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 ACAATTTGTTGAACAAACAGCACAATTCTTGAATGAGGAGATTTTTAGTAGTCAGGTTTG 1620 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TTGTTTGGATATCATAGTTTTTGAATGAGGAGAACATATTGGTTGGATTTACTGCGTGGA 1680 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 CATCACAATTATTGAATTTGGAGAACAAATTGGTTAGATTTGTTGTGTGGATATCATACT 1740 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TCTTGAATTAGAAGACCAAACTAGTTGTTTCTTTGAACAAATTGGTTAGAATTATTTTTT 1800 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TTTTAAAAAAATCATTTTTCCCTTCATGAATTAGGAACAGACAGATTGATGCCCATGTTA 1860 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 CCATGGTGGTGTCTGACTCATTGCAGTCTTATCTTTTTACACTCTCTAGTTTTCCCAAGC 1920 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ------------------------------------------------------------ consensus_13157#0 TGCAATCATGGTGGCCAAGTGCATGCCATGATGCACCTCTCATATACCACCATCTCTGCA 1980 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 -------------------------------------CCCCTCACCCCTTCATCAATTCG 23 consensus_13157#0 TGCTCAAGAACA--TCATGATT--TTTTGTTCTTCTTGTCACCAACTTTTTTTTTGTTTT 2036 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 -GCTCAGAGGCTGCTCCTCCTCAGTCCTGAGTCTCCTGTCCTCATCTCCATTTTGTTTTC 82 consensus_13157#0 TCCCCCTAACTTCTTTTCACCCTTGCAACGCACTTCTCACTCGTAGCTTTAGTTTTCCTC 2096 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 TCCTCCT--CCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTC---TCTCTGTCTCTCTGG 137 consensus_13157#0 TTGTCAGTAGCATATGTTTGTTTAGTTGTGATAAATTATCTTTTTTTTCCAGATCATGCC 2156 consensus_13157#2 -----------------CAGAAAGGAAGGGACAGGAAAAGGGGCTGA--AAGATCATGCC 41 consensus_13157#1 TGGAGTGCAGTGCAGAGAT-TCAAGAAGTTCAAGATCGAACAGGCCTG-CTGATCATGCC 195 * * * ********* consensus_13157#0 TTGTGCTGCGGCCGAGCTCGCCAATGGCGAGGCGGCGGCAGCAGCAGCATGCGCGGTGAA 2216 consensus_13157#2 TTGTGCTGCGGCCGAGCTCGCCCATGGCGAGGCGGCGGCNGCAGCAGCATGCGCGGTGAA 101 consensus_13157#1 TTGTGCTGCGGCCGAGCTCGCCAATGGCGAGGCGGCGGCAGCAGCAGCATGCGCGGTGAA 255 ********************** **************** ******************** consensus_13157#0 GGTCGGCACGACCGGCACCATCGGCTCGCTGATGACGAGGGAGCTGGAGGCCATCAAGGC 2276 consensus_13157#2 GGTCGGCACGACCGGCACCATCGGCTCGCTGATGACGAGGGAGCTGGAGGCCATCANGGC 161 consensus_13157#1 GGTCGGCACGAC-GNCACCATCGGCTCGCTGATGACGAGGGAGCTGGAGGCCATCAAGGC 314 ************ * ***************************************** *** consensus_13157#0 CGCGCCGCCGCACGCCACAGCCGCGGCGACGACGCCGCGGCGGCTGAGGCGGCAGAGCAG 2336 consensus_13157#2 CGCGCCGCCGCACGCCACAGCCGCGGCGACGACCCCCCGGCGGCTGAGGCGGCAGAGCAG 221 consensus_13157#1 CGCGCCGCCGCACGCCACAGCCGCGGCGACGACGCCGGCG-GNCTGAGGCGGCAGAGCAG 373 ********************************* ** * * ***************** consensus_13157#0 CCCGGTGTCGGTGCCATGCGGAGCCAGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTC 2396 consensus_13157#2 CCCGGTGTCGGTGCCATGCGGAGCCAGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTC 281 consensus_13157#1 CCCGGTGTCGGTGCCATGCGGANC-AGCCCGAGGAAGATCGCCGCGCTGAGGAAGAGCTC 432 ********************** * *********************************** consensus_13157#0 GTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCAGCGGGCGGCGCACTGACCGCGTGAG 2456 consensus_13157#2 GTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCNGCGGGCGGCGCACTGACCGCGTGAG 341 consensus_13157#1 GTCCAGCCTCTCCACCACCAGCAGCGGCGGCGGCAGCGGGCGGCGCACTGACCGCGTGAG 492 ********************************** ************************* consensus_13157#0 CGCCGAGGAGTCGTCGGCGTGCAAGACGGCGGCGTGCAGGAGGAGCTCTAGTACCACGCC 2516 consensus_13157#2 CGCCCAGGAGTCGTCGGCGTGCAAGACGGCNGCGTGCAGGAGGAGCTCTAGTACCACGCC 401 consensus_13157#1 CGCCGAGGAGTCGTCGGCGTGCAAGACGGCGGCGTGCAGGAGGAGCTCTAGTACCACGCC 552 **** ************************* ***************************** consensus_13157#0 GGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAA 2576 consensus_13157#2 GGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAA 461 consensus_13157#1 GGCCAGCTCCCCGATGCTCGCGGCGGACGTCGACCGGAGCGGCGGCGGCGGCAAGGCGAA 612 ************************************************************ consensus_13157#0 GAAGGCGGCGGCGAGGGGGCGCCGCGGCGTCGGCGGCGTGGAGGTGGTGGACGTGAGGTG 2636 consensus_13157#2 AAAAGCGGCGGCAAGGGGGCGCCGCGGCGTCCGCNGCNTGGAGGTGGTGGACGTGAGGTG 521 consensus_13157#1 AAAGGCGGCGGCGAGGGGGCGCCGCGGCGTCGGCGGCGTGGAGGTGGTGGACGTGAGGTG 672 ** ******** ****************** ** ** ********************** consensus_13157#0 CGGGAACCCGATGAGCAGCCGGCTG-AGGAGGCTGGGATTCTCCAAGCTGTCGGAGACGT 2695 consensus_13157#2 CGGGAACC-GATGAGCA-CCGGCTG-AGGAG-CTGGGATTCTCCA-GCTGTCNGAGA-GT 575 consensus_13157#1 CGGGAACCCGATGAGCAGCCGGCTGGAGGAGGCTGGGATTCTCCAAGCTGTCGGAGACGT 732 ******** ******** ******* ***** ************* ****** **** ** consensus_13157#0 TCGCGTGAGCAGAA-TCAGATCGTCTTCAGTCCTGACGGCGAGCTGTGTCGCGAATTGCA 2754 consensus_13157#2 TCGCGTGAGCAGAA-TCAGATC-------------------------------------- 596 consensus_13157#1 TCGCGTGAGCAGAMATCAGATCGTCTTCAGTCCTGACGGCGAGCTGTGTCGCGAATTSSA 792 ************* ******* consensus_13157#0 ATTCGGAATTGCATTATGTTTGCTATAGTAATTATATTGTTGTTATTAAAATTTTCTTTT 2814 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 ATBCGGAATBGCATTATGTTTGATATAGTAATTATATTGTTGTTATTAAAATKBTCTBTT 852 consensus_13157#0 GCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAGTTAATTTATGAGAAGCGTTTTGC 2874 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 GCTGGTTTCTCTCGTGTATGGGTATGACCAAATTAAGTTAATTTATGAGAAGCGTTTTGC 912 consensus_13157#0 CATCGTCGCAATGCAAGTTCTTCGTGGTGATGTGTATGATGTACCCGTAATTGCGTATTT 2934 consensus_13157#2 ------------------------------------------------------------ consensus_13157#1 CATAAAAAAAAAAA---------------------------------------------- 926 consensus_13157#0 TAACTTTTGGAGTGAATGTCTCCTCGTTTTAAAAAA 2970 consensus_13157#2 ------------------------------------ consensus_13157#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||