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Oryza sativa
cluster # 13159 cluster # 13159       Sequences # 12       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13159#0 length = 2355 sequences # 9  
 consensus_13159#1 length = 474 sequences # 1  
consensus_13159#2 length = 245 sequences # 2  
consensusID : consensus_13159#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 2355
fasta sequence 
                              [CCCTTCTCCCCATCTCTCTCTCTCTCCTCTCTCCCCCCATTCCCCACCTCGCTTCGCCTCCTCCTCCGCCTCCGCCGCCGCCAGGGCCTCGCCCTCCCACCCCAGCAGCGCCGCCGCCGCCGCCGCCGCCGCCGCGGCCGGATCCCACGCGCGGCTCGCCGCGCCGCCCCGTTCGACCCCCCGAATCGCCGGATCCCGTCGCCGGCGCCGCCGCCGCGCCTGGGGGGGAGCTCCCACCAGGGCGCTCCCCGCTATCCTCCTCCGTCCTTCCGCCGAGGTGATTTGCTCGGAGCTTTCGCTTTCTTACTAGTTTTTTTTTGGATGGGGAGTGATCTTCTCTTACCTCGGTGGGTGCTTAATGTGCTGGTTTGAACAGTTGGTTGTGGGGGAAATGAGTAGATGTTGTGCTTGTGGGTTATCTGAGTTGGTTGGTTATGGCTTGAATTGCTTCTTATTTGGTGCTGGAATGGTTAGCTGAAGCAAGTAATGCGCTACCAGCTTAGTCATACTTAGGTGGTGTGCTTGCTAATTTAGCAGATTAAACCGGTTTTATGCGAACTGCGAATATATAGAAGTGATGGACTGTGAGCATCTTTTTTGCGGGGATAAGGTTTAGTGTGTAGTCGAATCATTCTAGCTTTGCAGGGTTCGGGCGTGAGCTTATGGGGTACTAGTAAGGAGTAAATATTTAGTTTAGTAATTTGTTGCCTCCTTAAGCAAATTTGAATTGGATTTGCTTTGCAACCACCCTTATGCGATTGCTTGATGATTGCAGTGCTGTAGAAGCTGGTCACAGTTGAAACCTGGAAGGCAGCTGAGTCTATGGTTTTTGTGGGCCATTGTGCTATCGATGCGAGTAGAGAGCATGCGTGGCAGCTGTTCTTCGGGTGATGCCCCTGACCAGAGAAGCTGCCGATGCATTCGGTGTGGCAACAATTACACTGTTTGCAATCTTCGCTGTTCTGGGCCTCTTCTGCATTTTCCAGTCAATCTATTTCCGGTTTCGGATTCGGAGAGGGGCCTTCATTCCGCTCGGATACTTTAACGGCCCTTGGGTGACTCGCATTGTTTTGATTCTGATCACCATTTGGTGGGGAGTAGGGGAGATTGTCAGATTGAGCTTCTTGAAGAGAAAGTTGTTCTCCAGCATATTATTGCAGAAGGGTGTATGCGACGCGTACATCCTTTCCAATCTAGGGTTTGCGGAGCCAAGCATCTTCTTTGCGTTTGCTTTCCTTCTTCACGGCTCGTTACAGAAGAGGGAGTTGGGCACTTTGAACCAAAGATGGAATTGGAAGACCATAGGCTACATGTTGGTTTTCTGCGTTCCGGTGTTCTTCGTGCAGGCTCTTCTCGTGTTTGTTGGGCCAACATTTGTTAAGGATGAGAACAATACACATGGAAGGAAAAAGATTGCTAAATACTTCATCCGGACATCCATGCCAGTTGGGGACACAAATATTTGCACCTATCCATTGTTTGGCACCATTTTCCTGGGACTTATAGACGCCATCCTGATGAGCTATGTCTCCTATGTTGGATCTCGGGTTTTGTCCTTGGTCATCAACAAGGCACTGCGAAGGAGGGTTTCCTTGCTGATGTTATCGGTGCTTTTCTTCCTTCCTATCAGGGTGCTTCTACTTGGGTTTTCTGTCCTGCCCCAACCAGGAGATGTAGCATTTGAAGTGATCATCTTCTTGTCATTCTTGATGATGATATCCTGCACAACCGTTGGTGTTCTCTTGCTGGTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAATAACAGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCATCGCTTGTAGCCAACCAGAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCAACGAAGCGTGGTTCCATATCTTTCCGCACTATGATCAGGGAAGACCAACTTCAGCAGGATGGTGTTGATGAAATTGGATTCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTGCTGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAAGTATTCACCTGTTCCTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTTCTTCCTCTTACTACCTTAATGATAACAGTTTTGTGGCAATCAAAGGTTTTTGTAAAGTTTCCAAGTAGCTTGACTCATCATTAGTTTAGTACTCAAATCTCATTTATCAAAGTGGCATGTAGCTGGATGTTGCAAAGGCTGAGGAGCTGTGCATCTGGCATTGGCTGGAAAGGCTGAGTTGGAATTCCCTTTTGGTTGAAAAAAAAAAAAA]

[+] EMBL AK100276             [CCCTTCTCCCCATCTCTCTCTCTCTCCTCTCTCCCCCCATTCCCCACCTCGCTTCGCCTCCTCCTCCGCCTCCGCCGCCGCCAGGGCCTCGCCCTCCCACCCCAGCAGCGCCGCCGCCGCCGCCGCCGCCGCCGCGGCCGGATCCCACGCGCGGCTCGCCGCGCCGCCCCGTTCGACCCCCCGAATCGCCGGATCCCGTCGCCGGCGCCGCCGCCGCGCCTGGGGGGGAGCTCCCACCAGGGCGCTCCCCGCTATCCTCCTCCGTCCTTCCGCCGAGGTGATTTGCTCGGAGCTTTCGCTTTCTTACTAGTTTTTTTTTGGATGGGGAGTGATCTTCTCTTACCTCGGTGGGTGCTTAATGTGCTGGTTTGAACAGTTGGTTGTGGGGGAAATGAGTAGATGTTGTGCTTGTGGGTTATCTGAGTTGGTTGGTTATGGCTTGAATTGCTTCTTATTTGGTGCTGGAATGGTTAGCTGAAGCAAGTAATGCGCTACCAGCTTAGTCATACTTAGGTGGTGTGCTTGCTAATTTAGCAGATTAAACCGGTTTTATGCGAACTGCGAATATATAGAAGTGATGGACTGTGAGCATCTTTTTTGCGGGGATAAGGTTTAGTGTGTAGTCGAATCATTCTAGCTTTGCAGGGTTCGGGCGTGAGCTTATGGGGTACTAGTAAGGAGTAAATATTTAGTTTAGTAATTTGTTGCCTCCTTAAGCAAATTTGAATTGGATTTGCTTTGCAACCACCCTTATGCGATTGCTTGATGATTGCAGTGCTGTAGAAGCTGGTCACAGTTGAAACCTGGAAGGCAGCTGAGTCTATGGTTTTTGTGGGCCATTGTGCTATCGATGCGAGTAGAGAGCATGCGTGGCAGCTGTTCTTCGGGTGATGCCCCTGACCAGAGAAGCTGCCGATGCATTCGGTGTGGCAACAATTACACTGTTTGCAATCTTCGCTGTTCTGGGCCTCTTCTGCATTTTCCAGTCAATCTATTTCCGGTTTCGGATTCGGAGAGGGGCCTTCATTCCGCTCGGATACTTTAACGGCCCTTGGGTGACTCGCATTGTTTTGATTCTGATCACCATTTGGTGGGGAGTAGGGGAGATTGTCAGATTGAGCTTCTTGAAGAGAAAGTTGTTCTCCAGCATATTATTGCAGAAGGGTGTATGCGACGCGTACATCCTTTCCAATCTAGGGTTTGCGGAGCCAAGCATCTTCTTTGCGTTTGCTTTCCTTCTTCACGGCTCGTTACAGAAGAGGGAGTTGGGCACTTTGAACCAAAGATGGAATTGGAAGACCATAGGCTACATGTTGGTTTTCTGCGTTCCGGTGTTCTTCGTGCAGGCTCTTCTCGTGTTTGTTGGGCCAACATTTGTTAAGGATGAGAACAATACACATGGAAGGAAAAAGATTGCTAAATACTTCATCCGGACATCCATGCCAGTTGGGGACACAAATATTTGCACCTATCCATTGTTTGGCACCATTTTCCTGGGACTTATAGACGCCATCCTGATGAGCTATGTCTCCTATGTTGGATCTCGGGTTTTGTCCTTGGTCATCAACAAGGCACTGCGAAGGAGGGTTTCCTTGCTGATGTTATCGGTGCTTTTCTTCCTTCCTATCAGGGTGCTTCTACTTGGGTTTTCTGTCCTGCCCCAACCAGGAGATGTAGCATTTGAAGTGATCATCTTCTTGTCATTCTTGATGATGATATCCTGCACAACCGTTGGTGTTCTCTTGCTGGTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAATAACAGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCATCGCTTGTAGCCAACCAGAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCAACGAAGCGTGGTTCCATATCTTTCCGCACTATGATCAGGGAAGACCAACTTCAGCAGGATGGTGTTGATGAAATTGGATTCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTGCTGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAAGTATTCACCTGTTCCTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTTCTTCCTCTTACTACCTTAATGATAACAGTTTTGTGGCAATCAAAGGTTTTTGTAAAGTTTCCAAGTAGCTTGACTCATCATTAGTTTAGTACTCAAATCTCATTTATCAAAGTGGCATGTAGCTGGATGTTGCAAAGGCTGAGGAGCTGTGCATCTGGCATTGGCTGGAAAGGCTGA                                  ]
[+] EMBL CB680468             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGATTCTGATCACCATTTGGTGGGGAGTAGGGGAGATTGTCAGATTGAGCTTCTTGAAGAGAAAGTTGTTCTCCAGCATATTATTGCAGAAGGGTGTATGCGACGCGTACATCCTTTCCAATCTAGGGTTTGCGGAGCCAAGCATCTTCTTTGCGTTTGCTTTCCTTCTTCACGGCTCGTTACAGAAGAGGGAGTTGGGCACTTTGAACCAAAGATGGAATTGGAAGACCATAGGCTACATGTTGGTTTTCTGCGTTCCGGTGTTCTTCGTGCAGGCTCTTCTCGTGTTTGTTGGGCCAACATTTGTTAAGGATGAGAACAATACACATGGAAGGAAAAAGATTGCTAAATACTTCATCCGGACATCCATGCCAGTTGGGGACACAAATATTTGCACCTATCCATTGTTTGGCACCATTTTCCTGGGACTTATAGACGCCATCCTGATGAGCTATGTCTCCTATGTTGGATCTCGGGTTTTGTCCTTGGTCATCAACAAGGCACTGCGAAGGAGGGTTTCCTTGCTGATGTTATCGGTGCTTTTCTTCCTTCCTATCAGGGTGCTTCTACTTGGGTTTTCTGTCCTGCCCCAACCAGGAGATGTAGCATTTGAAGTGATCATCTTCTTGTCATTCTTGATGATGATATCCTGCACAACCGTTGGTGTTCTCTTGCTGGTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAATAACAGAGATGGTTCCTTATGATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK059113             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTGCGGAGCCAAGCATCTTCTTTGCGTTTGCTTTCCTTCTTCACGGCTCGTTACAGAAGAGGGAGTTGGGCACTTTGAACCAAAGATGGAATTGGAAGACCATAGGCTACATGTTGGTTTTCTGCGTTCCGGTGTTCTTCGTGCAGGCTCTTCTCGTGTTTGTTGGGCCAACATTTGTTAAGGATGAGAACAATACACATGGAAGGAAAAAGATTGCTAAATACTTCATCCGGACATCCATGCCAGTTGGGGACACAAATATTTGCACCTATCCATTGTTTGGCACCATTTTCCTGGGACTTATAGACGCCATCCTGATGAGCTATGTCTCCTATGTTGGATCTCGGGTTTTGTCCTTGGTCATCAACAAGGCACTGCGAAGGAGGGTTTCCTTGCTGATGTTATCGGTGCTTTTCTTCCTTCCTATCAGGGTGCTTCTACTTGGGTTTTCTGTCCTGCCCCAACCAGGAGATGTAGCATTTGAAGTGATCATCTTCTTGTCATTCTTGATGATGATATCCTGCACAACCGTTGGTGTTCTCTTGCTGGTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAATAACAGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCATCGCTTGTAGCCAACCAGAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCAACGAAGCGTGGTTCCATATCTTTCCGCACTATGATCAGGGAAGACCAACTTCAGCAGGATGGTGTTGATGAAATTGGATTCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTGCTGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAAGTATTCACCTGTTCCTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTTCTTCCTCTTACTACCTTAATGATAACAGTTT                                                                                                                                                                                    ]
[+] EMBL CB000501             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGGTGTTCTTCGTGCAGGCTCTTCTCGTGTTTGTTCCGCCAACATTTGTTAAGGATGAGAACAATACACATGGAAGGAAAAAGATTGCTAAATACTTCATCCGGACATCCATGCCAGTTGGGGACACAAATATTTGCACCTATCCATTGTTTGGCACCATTTTCCTGGGACTTATAGACGCCATCCTGATGAGCTATGTCTCCTATGTTGGATCTCGGGTTTTGTCCTTGGTCATCAACAAGGCACTGCGAAGGAGGGTTTCCTTGCTGATGTTATCGGTGCTTTTCTTCCTTCCTATCAGGGTGCTTCTACTTGGGTTTTCTGTCCTGCCCCAACCAGGAGATGTAGCATTTGAAGTGATCATCTTCTTGTCATTCTTGATGATGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BF430905             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCCAACATTTGTTAAGGATGAGAACAATACACATGGAAGGAAAAAGATTGCTAAATACTTCATCCGGACATCCATGCCAGTTGGGGACACAAATATTTGCACCTATCCGTTGTTTGGCACCATTTTCCTGGGACTTATAGACGCCATCCTGATGAGCTATGTCTCCTATGTTGGATCTCGGGTTTTGTCCTTGGTCATCAACAAGGCACTGCGAAGGAGGGTTTCCTTGCTGATGTTATCGGTGCTTTTCTTCCTTCCTATCAGGGTGCTTCTACTTGGGTTTTCTGTCCTGCCCCAACCAGGAGATGTAGCATTTGAAGTGATCATCTTCTTGTCATTCTTGATGATGATATCCTGCACAACCGTTGGTGTTCTCTTGCTGGTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAATAACAGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCATCGCTTGTAGCCAACCAGAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCAACGAAGCGTGGTTCCATATCTTTCCGCACTATGATCAGGGAAGACCAACTTCAGCAGGATGGTGTTGATGAAATTGGATTCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCC                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB680469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CAAATATTTGCACCTATCCATTGTTTGGCACCATTTTCCTGGGACTTATAGACGCCATCCTGATGAGCTATGTCTCCTATGTTGGATCTCGGGTTTTGTCCTTGGTCATCAACAAGGCACTGCGAAGGAGGGTTTCCTTGCTGATGTTATCGGTGCTTTTCTTCCTTCCTATCAGGGTGCTTCTACTTGGGTTTTCTGTCCTGCCCCAACCAGGAGATGTAGCATTTGAAGTGATCATCTTCTTGTCATTCTTGATGATGATATCCTGCACAACCGTTGGTGTTCTCTTGCTGGTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAATAACAGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCATCGCTTGTAGCCAACCAGAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCAACGAAGCGTGGTTCCATATCTTTCCGCACTATGATCAGGGAAGACCAACTTCAGCAGGATGGTGTTGATGAAATTGGATTCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTGCTGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAAGTATTCACCTGTTCCTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTTCTTCCTCTTACTCCCTTAATGATAACAGTAAGGGGGCAATCAAAGGTTTTTGTAAAGTTTCCAAa                                                                                                                                                  ]
[-] EMBL CA760094             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAACCAGGAGATGTAGCATTGAAAGTGATCATCTTCTTGTCATTCTTGATGATGATATCCTGCACAACCGTTGGTGTTCTCCTGCTGGTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAATAACAGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCATCGCTTGTAGCCAACCAGAGCTTTCGAGAAATTGAACGGAACTTAGATACTTCAACGAAGCGTGGTTCTATATCTTTCCGCCCTATGATCAGGGAAGACCAACTTTAGCAGGATGGTGTTGATGAAATTGGATTCTCCTCTTGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTGCTGCAATGCCCCTGCTCCCTCTCAAGGAAGTACCTAGATACTTAGAAGTATTCACCTGTTCCTTTTGCCCTTTTACTATGTTCTCCCTTTTCTTCTTCCTCTTTCTTCCTCTTACTACCTTAATGATAACAGTTTTGTGGCAATCAAAGGTTTTTGTAAAGTTTCCAAGTAGCTTGACTCATCATTAGTTTAGTACTCAAATCTCATTTATCAAAGTGGCATGTAGCTGGATGTTGCAAAGGCTGAGGAGCTGTGCATCTGGCATTGGCTGGAAAGGCTGAGTTGGAATTCCCTTTTGGTTGAAAAAAAAAAAAA]
[+] EMBL BQ907795             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGGTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAATAACAGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCATCGCTTGTAGCCAACCAGAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCAACGAAGCGTGGTTCCATATCTTTCCGCACTATGATCAGGGAAGACCAACTTCAGCAGGATGGTGTTGATGAAATTGGATTCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTGCTGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAA TATTCACCT TTCCTTTT CCCTT TACTATGTTCTCCCTTTTCTTCTTCCTCTTTCTTCCTCTTACTACCTTAATGATAACA TTTT TGCCAATCAAA GTTTTT TAAA TTTCCAAGTAaaaaaaa                                                                                                                                         ]
[+] EMBL BI812082             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTATGATGATTACTACTATGAAGGTGCATCGCTTGTAGCCAACCAGAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCAACGAAGCGTGGTTCCATATCTTTCCGCACTATGATCAGGGAAGACCAACTTCAGCAGGATGGTGTTGATGAAATTGGATTCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTGCTGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAAGTATTCACCTGTTCCTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTTCTTCCTCTTACTACCTTAATGATAACAGTTTTGTGGCAATCAAAGGTTTTTGTAAAGTTTCCAAGTAGCTTGACTCATCAaaaaaaaaa                                                                                                                          ]




>consensus_13159#0
CCCTTCTCCCCATCTCTCTCTCTCTCCTCTCTCCCCCCATTCCCCACCTCGCTTCGCCTC
CTCCTCCGCCTCCGCCGCCGCCAGGGCCTCGCCCTCCCACCCCAGCAGCGCCGCCGCCGC
CGCCGCCGCCGCCGCGGCCGGATCCCACGCGCGGCTCGCCGCGCCGCCCCGTTCGACCCC
CCGAATCGCCGGATCCCGTCGCCGGCGCCGCCGCCGCGCCTGGGGGGGAGCTCCCACCAG
GGCGCTCCCCGCTATCCTCCTCCGTCCTTCCGCCGAGGTGATTTGCTCGGAGCTTTCGCT
TTCTTACTAGTTTTTTTTTGGATGGGGAGTGATCTTCTCTTACCTCGGTGGGTGCTTAAT
GTGCTGGTTTGAACAGTTGGTTGTGGGGGAAATGAGTAGATGTTGTGCTTGTGGGTTATC
TGAGTTGGTTGGTTATGGCTTGAATTGCTTCTTATTTGGTGCTGGAATGGTTAGCTGAAG
CAAGTAATGCGCTACCAGCTTAGTCATACTTAGGTGGTGTGCTTGCTAATTTAGCAGATT
AAACCGGTTTTATGCGAACTGCGAATATATAGAAGTGATGGACTGTGAGCATCTTTTTTG
CGGGGATAAGGTTTAGTGTGTAGTCGAATCATTCTAGCTTTGCAGGGTTCGGGCGTGAGC
TTATGGGGTACTAGTAAGGAGTAAATATTTAGTTTAGTAATTTGTTGCCTCCTTAAGCAA
ATTTGAATTGGATTTGCTTTGCAACCACCCTTATGCGATTGCTTGATGATTGCAGTGCTG
TAGAAGCTGGTCACAGTTGAAACCTGGAAGGCAGCTGAGTCTATGGTTTTTGTGGGCCAT
TGTGCTATCGATGCGAGTAGAGAGCATGCGTGGCAGCTGTTCTTCGGGTGATGCCCCTGA
CCAGAGAAGCTGCCGATGCATTCGGTGTGGCAACAATTACACTGTTTGCAATCTTCGCTG
TTCTGGGCCTCTTCTGCATTTTCCAGTCAATCTATTTCCGGTTTCGGATTCGGAGAGGGG
CCTTCATTCCGCTCGGATACTTTAACGGCCCTTGGGTGACTCGCATTGTTTTGATTCTGA
TCACCATTTGGTGGGGAGTAGGGGAGATTGTCAGATTGAGCTTCTTGAAGAGAAAGTTGT
TCTCCAGCATATTATTGCAGAAGGGTGTATGCGACGCGTACATCCTTTCCAATCTAGGGT
TTGCGGAGCCAAGCATCTTCTTTGCGTTTGCTTTCCTTCTTCACGGCTCGTTACAGAAGA
GGGAGTTGGGCACTTTGAACCAAAGATGGAATTGGAAGACCATAGGCTACATGTTGGTTT
TCTGCGTTCCGGTGTTCTTCGTGCAGGCTCTTCTCGTGTTTGTTGGGCCAACATTTGTTA
AGGATGAGAACAATACACATGGAAGGAAAAAGATTGCTAAATACTTCATCCGGACATCCA
TGCCAGTTGGGGACACAAATATTTGCACCTATCCATTGTTTGGCACCATTTTCCTGGGAC
TTATAGACGCCATCCTGATGAGCTATGTCTCCTATGTTGGATCTCGGGTTTTGTCCTTGG
TCATCAACAAGGCACTGCGAAGGAGGGTTTCCTTGCTGATGTTATCGGTGCTTTTCTTCC
TTCCTATCAGGGTGCTTCTACTTGGGTTTTCTGTCCTGCCCCAACCAGGAGATGTAGCAT
TTGAAGTGATCATCTTCTTGTCATTCTTGATGATGATATCCTGCACAACCGTTGGTGTTC
TCTTGCTGGTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGG
AAATAACAGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCATCGCTTGTAGCCA
ACCAGAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCAACGAAGCGTGGTTCCATAT
CTTTCCGCACTATGATCAGGGAAGACCAACTTCAGCAGGATGGTGTTGATGAAATTGGAT
TCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTG
CTGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAAGTATTCACCTGTT
CCTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTTCTTCCTCTTACTACCT
TAATGATAACAGTTTTGTGGCAATCAAAGGTTTTTGTAAAGTTTCCAAGTAGCTTGACTC
ATCATTAGTTTAGTACTCAAATCTCATTTATCAAAGTGGCATGTAGCTGGATGTTGCAAA
GGCTGAGGAGCTGTGCATCTGGCATTGGCTGGAAAGGCTGAGTTGGAATTCCCTTTTGGT
TGAAAAAAAAAAAAA

consensusID : consensus_13159#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence 
                              [GTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAAGTACCACGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCCTCGCTTGTAGCCACACCACGAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCATACGAAGCGTGGTTCCATATCTTTCCGCACTATGATCACGGGAAGACCAACTTCAGCCAGGATGGTGTTGATGAAATTGGATTCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTGCTGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAAGTATTCACCTGTTCCTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTTTTCCTCTTACTACCTTAATGATACAGTTTTGTGGCAATCAAAGGTTTTTGTAAAGTTTCCCAAAAAAAAAA]

[+] EMBL BI802112             [GTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAAGTACCACGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCCTCGCTTGTAGCCACACCACGAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCATACGAAGCGTGGTTCCATATCTTTCCGCACTATGATCACGGGAAGACCAACTTCAGCCAGGATGGTGTTGATGAAATTGGATTCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTGCTGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAAGTATTCACCTGTTCCTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTTTTCCTCTTACTACCTTAATGATACAGTTTTGTGGCAATCAAAGGTTTTTGTAAAGTTTCCCAAAAAAAAAA]




>consensus_13159#1
GTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGGAAAGTACC
ACGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCCTCGCTTGTAGCCACACCAC
GAGCTTTCGAGAAATTGAACGGAACTCAGATACTTCATACGAAGCGTGGTTCCATATCTT
TCCGCACTATGATCACGGGAAGACCAACTTCAGCCAGGATGGTGTTGATGAAATTGGATT
CTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATCCCCAAGTGC
TGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAAGTATTCACCTGTTC
CTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTTTTCCTCTTACTACCTTA
ATGATACAGTTTTGTGGCAATCAAAGGTTTTTGTAAAGTTTCCCAAAAAAAAAA

consensusID : consensus_13159#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 245
fasta sequence 
                              [TGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTCCGTTCTCACCAGACATGGCGAATTCGGCACGAGGGTTCCGGTGTTCTTCGTGCAGGCTCTTCTCGTGTTTGTTGGGCCAACATTTGTTAAGGATGAGAACAATACACATGGAAGGAAAAAGATTGCTAAATACTTCATCCGGACATCCATGCCAGTTGGGGACACAAATATTTGCACCT]

[+] EMBL CA999914             [TGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTCCGTTCTCACCAGACATGGCGAATTCGGCACGAGGGTTCCGGTGTTCTTCGTGCAGGCTCTTCTCGTGTTTGTTGGGCCAACATTTGTTAAGGATGAGAACAATACACATGGAAGGAAAAAGATTGCTAAATACTTCATCCGGACATCCATGCCAGTTGGGGACACAAATATTTGCACCT]
[+] EMBL CA999271             [ GTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGACGACTCCGTTCTCACCAGACATGGCGAATTCGGCACGAGGGTTCCGGTGTTCTTCGTGCAGGCTCTTCTCGTGTTTGTTGGGCCAACATTTGTTAAGGATGAGAACAATACACATGGAAGGAAAAAGATTGCTAAATACTTCAT                                         ]




>consensus_13159#2
TGTATGTTTATAACGGTGTCAGCCCGTATTTAGCCCTTGCACGATTGCAAGCCTCATTGA
CGACTCCGTTCTCACCAGACATGGCGAATTCGGCACGAGGGTTCCGGTGTTCTTCGTGCA
GGCTCTTCTCGTGTTTGTTGGGCCAACATTTGTTAAGGATGAGAACAATACACATGGAAG
GAAAAAGATTGCTAAATACTTCATCCGGACATCCATGCCAGTTGGGGACACAAATATTTG
CACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13159#0      CCCTTCTCCCCATCTCTCTCTCTCTCCTCTCTCCCCCCATTCCCCACCTCGCTTCGCCTC 60
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      CTCCTCCGCCTCCGCCGCCGCCAGGGCCTCGCCCTCCCACCCCAGCAGCGCCGCCGCCGC 120
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      CGCCGCCGCCGCCGCGGCCGGATCCCACGCGCGGCTCGCCGCGCCGCCCCGTTCGACCCC 180
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      CCGAATCGCCGGATCCCGTCGCCGGCGCCGCCGCCGCGCCTGGGGGGGAGCTCCCACCAG 240
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      GGCGCTCCCCGCTATCCTCCTCCGTCCTTCCGCCGAGGTGATTTGCTCGGAGCTTTCGCT 300
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TTCTTACTAGTTTTTTTTTGGATGGGGAGTGATCTTCTCTTACCTCGGTGGGTGCTTAAT 360
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      GTGCTGGTTTGAACAGTTGGTTGTGGGGGAAATGAGTAGATGTTGTGCTTGTGGGTTATC 420
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TGAGTTGGTTGGTTATGGCTTGAATTGCTTCTTATTTGGTGCTGGAATGGTTAGCTGAAG 480
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      CAAGTAATGCGCTACCAGCTTAGTCATACTTAGGTGGTGTGCTTGCTAATTTAGCAGATT 540
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      AAACCGGTTTTATGCGAACTGCGAATATATAGAAGTGATGGACTGTGAGCATCTTTTTTG 600
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      CGGGGATAAGGTTTAGTGTGTAGTCGAATCATTCTAGCTTTGCAGGGTTCGGGCGTGAGC 660
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TTATGGGGTACTAGTAAGGAGTAAATATTTAGTTTAGTAATTTGTTGCCTCCTTAAGCAA 720
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      ATTTGAATTGGATTTGCTTTGCAACCACCCTTATGCGATTGCTTGATGATTGCAGTGCTG 780
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TAGAAGCTGGTCACAGTTGAAACCTGGAAGGCAGCTGAGTCTATGGTTTTTGTGGGCCAT 840
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TGTGCTATCGATGCGAGTAGAGAGCATGCGTGGCAGCTGTTCTTCGGGTGATGCCCCTGA 900
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      CCAGAGAAGCTGCCGATGCATTCGGTGTGGCAACAATTACACTGTTTGCAATCTTCGCTG 960
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TTCTGGGCCTCTTCTGCATTTTCCAGTCAATCTATTTCCGGTTTCGGATTCGGAGAGGGG 1020
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      CCTTCATTCCGCTCGGATACTTTAACGGCCCTTGGGTGACTCGCATTGTTTTGATTCTGA 1080
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TCACCATTTGGTGGGGAGTAGGGGAGATTGTCAGATTGAGCTTCTTGAAGAGAAAGTTGT 1140
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TCTCCAGCATATTATTGCAGAAGGGTGTATGCGACGCGTACATCCTTTCCAATCTAGGGT 1200
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TTGCGGAGCCAAGCATCTTCTTTGCGTTTGCTTTCCTTCTTCACGGCTCGTTACAGAAGA 1260
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      GGGAGTTGGGCACTTTGAACCAAAGATGGAATTGGAAGACCATAGGCTACATGTTGGTTT 1320
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TCTGCGTTCCGGTGTTCTTCGTGCAGGCTCTTCTCGTGTTTGTTGGGCCAACATTTGTTA 1380
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      AGGATGAGAACAATACACATGGAAGGAAAAAGATTGCTAAATACTTCATCCGGACATCCA 1440
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TGCCAGTTGGGGACACAAATATTTGCACCTATCCATTGTTTGGCACCATTTTCCTGGGAC 1500
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TTATAGACGCCATCCTGATGAGCTATGTCTCCTATGTTGGATCTCGGGTTTTGTCCTTGG 1560
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TCATCAACAAGGCACTGCGAAGGAGGGTTTCCTTGCTGATGTTATCGGTGCTTTTCTTCC 1620
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TTCCTATCAGGGTGCTTCTACTTGGGTTTTCTGTCCTGCCCCAACCAGGAGATGTAGCAT 1680
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TTGAAGTGATCATCTTCTTGTCATTCTTGATGATGATATCCTGCACAACCGTTGGTGTTC 1740
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TCTTGCTGGTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGG 1800
consensus_13159#1      --------GTGTACTATCCTGTAGCAGATTCATTGGCTCTCCGAGAGATAGGTCAGAGGG 52
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      AAA-TAACA-GAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCATCGCTTGTAGC 1858
consensus_13159#1      AAAGTACCACGAGATGGTTCCTTATGATGATTACTACTATGAAGGTGCCTCGCTTGTAGC 112
consensus_13159#2      -----------------------------TGTATGTTTATAACGGTGTCA-GCCCGTATT 30
                                                      **    *** * ****    **  ***  

consensus_13159#0      CA-ACCA-GAGCTTTCGAGAAATTGAACGG-AACTCAGATACTTCA-ACGAAGCGTGGTT 1914
consensus_13159#1      CACACCACGAGCTTTCGAGAAATTGAACGG-AACTCAGATACTTCATACGAAGCGTGGTT 171
consensus_13159#2      TAGCCCTTGCACGATTGCAAGCCTCATTGACGACTCCG----TTCTCACCAGACATGG-- 84
                        *  **  *  *  * *  *   * *  *   **** *    ***  ** *  * ***  

consensus_13159#0      CCATATCTTTCCGCACTATGATCA-GGGAAGACCAACTTCAGC-AGGATGGTGTTGATGA 1972
consensus_13159#1      CCATATCTTTCCGCACTATGATCACGGGAAGACCAACTTCAGCCAGGATGGTGTTGATGA 231
consensus_13159#2      -CGAAT---TCGGCACGAGGGTTCCGGTGTT-----CTTCGTGCAGGCTCTTCTCGTGTT 135
                        *  **   ** **** * * *   **         ****    *** *  * * *    

consensus_13159#0      AATTGGATTCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATC 2032
consensus_13159#1      AATTGGATTCTCCTCTCGTAGTGGTGCTCATATTGGATCACCCTCACCTTCAGGTTCATC 291
consensus_13159#2      TGTTGGGCCAACATTTGTTAAGGATGAGAACAAT-----ACACATGGAAGGAAAAAGATT 190
                         ****     * * *  **  * **   * * *     ** *        *     ** 

consensus_13159#0      CCCAAGTGCTGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAAGTATT 2092
consensus_13159#1      CCCAAGTGCTGCAATGCCCATGCTCCCTCTCAAGGAAGTACCTAGATACTAAGAAGTATT 351
consensus_13159#2      GCTAAATACTTCAT--CCGGACATCCATGCCAGTTGGGGACACAAATATTTGCACCT--- 245
                        * ** * ** **   **     *** *  **     * **  * *** *   *  *   

consensus_13159#0      CACCTGTTCCTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTTCTTCCTCT 2152
consensus_13159#1      CACCTGTTCCTTTTGCCCTTCTACTATGTTCTCCCTTTTCTTCTTCCTCTTT-TTCCTCT 410
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      TACTACCTTAATGATAACAGTTTTGTGGCAATCAAAGGTTTTTGTAAAGTTTCCAAGTAG 2212
consensus_13159#1      TACTACCTTAATGATA-CAGTTTTGTGGCAATCAAAGGTTTTTGTAAAGTTTCCCAAAAA 469
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      CTTGACTCATCATTAGTTTAGTACTCAAATCTCATTTATCAAAGTGGCATGTAGCTGGAT 2272
consensus_13159#1      AAAAA------------------------------------------------------- 474
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      GTTGCAAAGGCTGAGGAGCTGTGCATCTGGCATTGGCTGGAAAGGCTGAGTTGGAATTCC 2332
consensus_13159#1      ------------------------------------------------------------
consensus_13159#2      ------------------------------------------------------------
                                                                                   

consensus_13159#0      CTTTTGGTTGAAAAAAAAAAAAA 2355
consensus_13159#1      -----------------------
consensus_13159#2      -----------------------


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)