cluster # 13177

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13177 cluster # 13177 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13177#0 length = 2011 sequences # 10

consensus_13177#1 length = 472 sequences # 2

consensusID : consensus_13177#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 2011
fasta sequence

                              [TACTACTGCCATATTATACTTTCAACTACCTTGTGAGCTCAAACGCTGAAGGCGCATCAAGTCAATTGGCAGACAACAGTTTACTTGTTCTGCTTATTCTGATCCACTACCGGAAGTGCATTACGATGAGCGAATCCTTTCCAAGCAGTAATGTCTACACAAGCGATTTAAATACCAATGTCAAGGATGCACCGGCTTTTCATGATAATCCATATTACAAGGCCTTAAGCAATGCCAAAGACAGTCAATATGATCGTGCTGATGTTGAAGGAAATGCTCAAAATGGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCACATGCTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATATGTTCTGGTTCGAACAGACCTGGATACTTTGCTGATGCCTATCTTGGAAATGCTCTACAATGCATCAAGAAAGACCTCCAATCAGATATACATGCTATTGATAGTTCTTCTTATACTCAGTCAAGATTCAACCTTCAATGCTAGTGTACACAAATTGGTGCTTCCGAGCGTCCCTTGGTACCATGAGCGCCTTATGCATCAAACTTCTTTGGGATCTTTGATGGTTGTTATACTAATCCGAACCATCAAATACAACCTCTCCAAACTGCGAGATGTCTACCTTCATACAAACTGCCTTGCAATTCTAGCAAATATGGCCCCTCATGTGCATAGGCTGAGTGCATATGCATCTCAAAGGCTGGTTAGCCTCTTTGACATGCTCTCTCGCAAGTATACCAAATTAGCCGAGTTAAAAAATGACAAAGCTATCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGTCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAACCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACAGTGTTGGATTTCTTCAATAGTCGAATGGACATGCAGCAGTTAGATGGAGAATGGTCTGTAGATAAGGTTCTTGAGGTTATTAACAAAAACTGCCGTTCATGGCGTGGAGAAGGAATGAAGATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACATAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTTCCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAACTATGTAGGGTACAACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTCATCTCTTATCACCTCTGACGCGGGAAGGCCACTCTGGTGTTTTAACATGTCTACCGTACCGTCGGTCGGTTTTCCTGTGAGAGGCCTGAACCGTTCTCTTGAATGTTGCCTCAGTTCGAAGATAACCTGCTACTCCGTCGGTGTTTCAACAAGCATGCTGGAAGGGCAGAAAAAGGAAAGCGTGCGAGAAGAGTTTATAGACCAAGGAACCGACGGTTTCATTAATCGGAAGCTATTCCATTTTATTCACTTTCTGGCTTCCAGAAACAAGTACTGGTAAAAGAAAAAAATGTTTCATGTGTCTGAAAAGTAGTCAGGTACCTTCATTTTGATGAAATATCAAAAGTTGAAATGTACTACGGTGATTGGAAGGCATTACAACTTTACAAGTGCAC]

[+] EMBL AK100668             [TACTACTGCCATATTATACTTTCAACTACCTTGTGAGCTCAAACGCTGAAGGCGCATCGAGTCAATTGGCAGACAACAGTTTACTTGTTCTGCTTATTCTGATCCACTACCGGAGGTGCATTACGATGAGCGAATCCTTTCCAAGCAGTAATGTCTACACAAGCGATTTAAATACCAATGTCAAGGATGCACCGGCTTTTCATGATGATCCATATTACAAGGCCTTAAGCAATGCCAAAGACAGTCAATATGATCGTGCTGATGTTGAAGGAAATGCTCAAAATGGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCACATGCTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATATGTTCTGGTTCGAACAGACCTGGATACTTTGCTGATGCCTATCTTGGAAATGCTCTACAATGCATCAAGAAAGACCTCCAATCAGATATACATGCTATTGATAGTTCTTCTTATACTCAGTCAAGATTCAACCTTCAATGCTAGTGTACACAAATTGGTGCTTCCGAGCGTCCCTTGGTACCATGAGCGCCTTATGCATCAAACTTCTTTGGGATCTTTGATGGTTGTTATACTAATCCGAACCATCAAATACAACCTCTCCAAACTGCGAGATGTCTACCTTCATACAAACTGCCTTGCAATTCTAACAAATATGGCCCCTCATGTGCATAGGCTGAGTGCATATGCATCTCAAAGGCTGGTTAGCCTCTTTGACATGCTCTCTCGCAAGTATACCAAATTAGCCGAGTTAAAAAATGACAAAGCTATCAAAGTTATATCTGATCAGATTGAAGCAGACAACACCTCAGATGATACGTCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGGTCGTGTATGCTGTCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAACCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACAGTGTTGGATTTCTTCAATAGTCGAATGGACATGCAGCAGTTAGATGGAGAATGGTCTGTAGATAAGGTTCTTGAGGTTATTAACAAAAACTGCCGTTCATGGCGTGGAGAAGGAATGAAGATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACATAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTTCCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAACTATGTAGGGTACAACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTCATCTCTTATCACCTCTGACGCGGGAAGGCCACTCTGGTGTTTTAACATGTCTACCGTACCGTCGGTCGGTTTTCCTGTGAGAGGCCTGAACCGTTCTCTTGAATGTTGCCTCAGTTCGAAGATAACCTGCTACTCCGTCGGTGTTTCAACAAGCATGCTGGAAGGGCAGAAAAAGGAAAGCGTGCGAGAAGAGTTTATAGACCAAGGAACCGACGGTTTCATTAATCGGAAGCTATTCCATTTTATTCACTTTCTGGCTTCCAGAAACAAGTACTGGTAAAAGAAAAAAATGTTTCATGTGTCTGAAAAGTAGTCAGGTACCTTCATTTTGATGAAATATCAAAAGTTGAAATGTACTACGGTGATTGGAAGGCATTACAACTTTACAAGTG   ]
[+] EMBL AK102008             [TACTACTGCCATATTATACTTTCAACTACCTTGTGAGCTCAAACGCTGAAGGCGCATCAAGTCAATTGGCAGACAACAGTTTACTTGTTCTGCTTATTCTGATCCACTACCGGAAGTGCATTACGATGAGCGAATCCTTTCCAAGCAGTAATGTCTACACAAGCGATTTAAATACCAATGTCAAGGATGCACCGGCTTTTCATGATAATCCATATTACAAGGCCTTAAGCAATGCCAAAGACAGTCAATATGATCGTGCTGATGTTGAAGGAAATGCTCAAAATGGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCACATGCTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATATGTTCTGGTTCGAACAGACCTGGATACTTTGCTGATGCCTATCTTGGAAATGCTCTACAATGCATCAAGAAAGACCTCCAATCAGATATACATGCTATTGATAGTTCTTCTTATACTCAGTCAAGATTCAACCTTCAATGCTAGTGTGCACAAATTGGTGCTTCCGAGCGTCCCTTGGTACCATGAGCGCCTTATGCATCAAACTTCTTTGGGATCTTTGATGGTTGTTATACTAATCCGAACCATCAAATACAACCTCTCCAAACTGCGAGATGTCTACCTTCATACAAACTGCCTTGCAATTCTAGCAAATATGGCCCCTCATGTGCATAGGCTGAGTGCATATGCATCTCAAAGGCTGGTTAGCCTCTTTGACATGCTCTCTCGCAAGTATACCAAATTAGCCGAGTTAAAAAATGACAAAGCTATCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGTCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAACCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACAGTGTTGGATTTCTTCAATAGTCGAATGGACATGCAGCAGTTAGATGGAGAATGGTCTGTAGATAAGGTTCTTGAGGTTATTAACAAAAACTGCCGTTCATGGCGTGGAGAAGGAATGAAGATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACATAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTTCCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAACTATGTAGGGTACAACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTCATCTCTTATCACCTCTGACGCGGGAAGGCCACTCTGGTGTTTTAACATGTCTACCGTACCGTCGGTCGG                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB633467             [TACTACTGCCATATTATACTTTCAACTACCTTGTGAGCTCAAACGCTGAAGGCGCATCAAGTCAATTGGCAGACAACAGTTTACTTGTTCTGCTTATTCTGATCCACTACCGGAAGTGCATTACGACGAGCGAATCCTTTCCAAGCAGTAATGTCTACACAAGCGATTTAAATACCAATGTCAAGGATGCACCGGCTTTTCATGATAATCCATATTACAAGGCCTTAAGCAATGCCAAAGACAGTCAATATGATCGTGCTGATGTTGAAGGAAATGCTCAAAATGGGCTAGTTGTCAGGTTGTCTTTTGCATCGCTATTTGACGCTCTTGGCACATGCTTAAAAGATGAGAGCTCGGTTCTACTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATATGTTCTGGTTCGAACAGACCTGGATACTTTGCTGATGCCTATCTTGGAAATGCTCTACAATGCATCAAGAAAGACCTCCAATCAGATATACATGCTATTGATAGTTCTTCTTATACTCAGTCAAGATTCAACCTTCAATGCTAGTGTACACAAATTGGTGCTTCCGAGCGTCCCTTGGTACCATGAGCGCCTTATGCATCAAACTTCTTTGGGATCTTTGATGGTTGTTATACTAATCCGAACCATCAAATACAACCTCTCCAAACTGCGAGATGTCTACCTTCATACAAACTGCCTTGCAATTCTAGCAAATATGGCCCCTCATGTGCATANGCTGAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB644060             [                                                                                                                                                                                                                                                                                                                                                                                      TTGGCCCATGGGAACTGTGACTTTCAGGAATATGTTCTGGTTCGAACAGACCTGGATACTTTGCTGATGCCTATCTTGGAAATGCTCTACAATGCATCAAGAAAGACCTCCAATCAGATATACATGCTATTGATAGTTCTTCTTATACTCAGTCAAGATTCAACCTTCAATGCTAGTGTACACAAATTGGTGCTTCCGAGCGTCCCTTGGTACCATGAGCGCCTTATGCATCAAACTTCTTTGGGATCTTTGATGGTTGTTATACTAATCCGAACCATCAAATACAACCTCTCCAAACTGCGAGATGTCTACCTTCATACAAACTGCCTTGCAATTCTAGCAAATATGGCCCCTCATGTGCATAGGCTGAGTGCATATGCATCTCAAAGGCTGGTTAGCCTCTTTGACATGCTCTCTCGCAAGTATACCAAATTAGCCGAGTTAAAAAATGACAAAGCTATCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGTCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAACCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACAGTGTTGGATTTCTTCAATAGTCGAATGGACATGCAGCAGTTAGATGGAGAATGGTCTGTAGATAACGTTCTTGAGGTTATTAACAAAAACTGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSC17121             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATACCAAATTAGCCGAGTTAAAAAATGACAAAGCTATCAAAGTTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGTCCACAGAACTTCACATCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCATTGCCTAGAAATCCTGAGGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCATTCAAAAACCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACAGTGTTGGATTTCTTCAATAGTCGAATGGNCATGCAGCAGTTAGATGGNGAATGGTCTGTAGATAAGGTTCTTGAGGTTATTAACAAAAACTGCCGTTCATGGCGTNGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU069367             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TACACAGTGTTGGATTTCTTCAATAGTCGAATGGACATGCAGCAGTTAGATGGAGAATGGTCTGTAGATAAGGTTCTTGAGGTTATTAACAAAAACTGCCGTTCATGGCGTGGAGAAGGAATGAAGATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU069378             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TACACAGTGTTGGATTTCTTCAATAGTCGAATGGACATGCAGCAGTTAGATGGAGAATGGTCTGTAGATAAGGTTCTTGAGGTTATTAACAAAAACTGCCGTTCATGGCGTGGAGAAGGAATGAAGATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF311388             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAATAGCCGAATGGACATGCAGCAGTTAGATGGAGAATGGTCTGTAGATAAGGTTCTTGAGGTTATTAACAAAAACTGCCGTTCATGGCGTGGAGAAGGAATGAAGATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACATAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTTCCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAACTATGTAGGGTACAACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTCATCTCTTATCACCTCTGACGCGGGAAGGCCACTCTGGTGTTTTAACATGTCT                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB633468             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACATAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTTCCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAACTATGTAGGGTACCACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTCATCTCTTATCACCTCTGACGCGGGAAGGCCACTCTGGTGTTTTAACATGTCTACCGTACCGTCGGTCGGTTTTCCTGTGAGAGGCCTGAACCGTTCTCTTGAATGTTGCCTCAGTTCGAAGATAACCTGCTACTCCGTCGGTGCTTCAACAAGCATGCTGGAAGAGCAGAAAAAGGAAAGCGTGCGAGAAGAGTTTATAGACCAAGGAACCGACGGTTTCATTAATCGGAAGCTATTCCATTTTATTCACTTTCTGGCTTCCAGAAACAAGTACTGGTAAAAGAAAAAAATGTTTCATGTGTCTGAAAAGTAGTCAGGTACCTTCATTTTGATGAAATATCAAAAGTTGAAATGTACTACGGTGATTGGA                         ]
[-] EMBL CB644065             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACATAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTTCCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAACTATGTAGGGTACAACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTCATCTCTTATCACCTCTGACGCGGGAAGGCCACTCTGGTGTTTTAACATGTCTACCGTACCGTCGGTCGGTTTTCCTGTGAGAGGCCTGAACCGTTCTCTTGAATGTTGCCTCAGTTCGAAGATAACCTGCTACTCCGTCGGTGTTTCAACAAGCATGCTGGAAGGGCAGAAAAAGGAAAGCGTGCGAGAAGAGTTTATAGACCAAGGAACCGACGGTTTCATTAATCGGAAGCTATTCCATTTTATTCACTTTCTGGCTTCCAGAAACAAGTACTGGTAAAAGAAAAAAATGTTTCATGTGTCTGAAAAGTAGTCAGGTACCTTCATTTTGATGAAATATCAAAAGTTGAAATGTACTACGGTGATTGGAAGGCATAAGAACTTTACAAGTGCAC]




>consensus_13177#0
TACTACTGCCATATTATACTTTCAACTACCTTGTGAGCTCAAACGCTGAAGGCGCATCAA
GTCAATTGGCAGACAACAGTTTACTTGTTCTGCTTATTCTGATCCACTACCGGAAGTGCA
TTACGATGAGCGAATCCTTTCCAAGCAGTAATGTCTACACAAGCGATTTAAATACCAATG
TCAAGGATGCACCGGCTTTTCATGATAATCCATATTACAAGGCCTTAAGCAATGCCAAAG
ACAGTCAATATGATCGTGCTGATGTTGAAGGAAATGCTCAAAATGGGCTAGTTGTCAGGT
TGTCTTTTGCATCGCTATTTGACGCTCTTGGCACATGCTTAAAAGATGAGAGCTCGGTTC
TACTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATATGTTCTGGTTCGAA
CAGACCTGGATACTTTGCTGATGCCTATCTTGGAAATGCTCTACAATGCATCAAGAAAGA
CCTCCAATCAGATATACATGCTATTGATAGTTCTTCTTATACTCAGTCAAGATTCAACCT
TCAATGCTAGTGTACACAAATTGGTGCTTCCGAGCGTCCCTTGGTACCATGAGCGCCTTA
TGCATCAAACTTCTTTGGGATCTTTGATGGTTGTTATACTAATCCGAACCATCAAATACA
ACCTCTCCAAACTGCGAGATGTCTACCTTCATACAAACTGCCTTGCAATTCTAGCAAATA
TGGCCCCTCATGTGCATAGGCTGAGTGCATATGCATCTCAAAGGCTGGTTAGCCTCTTTG
ACATGCTCTCTCGCAAGTATACCAAATTAGCCGAGTTAAAAAATGACAAAGCTATCAAAG
TTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGTCCACAGAACTTCACA
TCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCAT
TGCCTAGAAATCCTGAGGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCAT
TCAAAAACCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACAGTGTTGGATTTCT
TCAATAGTCGAATGGACATGCAGCAGTTAGATGGAGAATGGTCTGTAGATAAGGTTCTTG
AGGTTATTAACAAAAACTGCCGTTCATGGCGTGGAGAAGGAATGAAGATGTTTACCCAGT
TACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGC
GCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGG
AGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGT
TGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACA
TAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTT
CCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAA
CTATGTAGGGTACAACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTCATCT
CTTATCACCTCTGACGCGGGAAGGCCACTCTGGTGTTTTAACATGTCTACCGTACCGTCG
GTCGGTTTTCCTGTGAGAGGCCTGAACCGTTCTCTTGAATGTTGCCTCAGTTCGAAGATA
ACCTGCTACTCCGTCGGTGTTTCAACAAGCATGCTGGAAGGGCAGAAAAAGGAAAGCGTG
CGAGAAGAGTTTATAGACCAAGGAACCGACGGTTTCATTAATCGGAAGCTATTCCATTTT
ATTCACTTTCTGGCTTCCAGAAACAAGTACTGGTAAAAGAAAAAAATGTTTCATGTGTCT
GAAAAGTAGTCAGGTACCTTCATTTTGATGAAATATCAAAAGTTGAAATGTACTACGGTG
ATTGGAAGGCATTACAACTTTACAAGTGCAC

consensusID : consensus_13177#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 472
fasta sequence

                              [TGGCGTGGAGAAGGAATGAAGATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACATAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTTCCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAACTATGTAGGGTACAACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTCAAAAAAAAAAAAAAAAAAACTC]

[-] EMBL CF326139             [TGGCGTGGAGAAGGAATGAAGATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACATAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTTCCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAACTATGTAGGGTACAACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTCAAAAAAAAAAAAAAAAAAACTC]
[+] EMBL AU172348             [                    GATGTTTACCCAGTTACGTTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTNTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACATAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTTCCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAACTATGTAGGGTACAACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTAAAAAAAA               ]




>consensus_13177#1
TGGCGTGGAGAAGGAATGAAGATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGT
CATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGGATTCTCT
TTCAATCCTGGTGCAATAAATCTGTTCCCTGTGGAGATTCATGTTGATGATGAACCATCC
GGTGAACAAAAGGTCTAAGAATAATCTTGAATGTTGAGTTCTGACTACAGCAGGATGACA
TGTTCCATCCACCGAGGCAAATAGATATTGTACATAGGAGGCATATACCAGACGATCGAC
ATGTATTCTTATTCATTTGTGTATATTTCCGTTTCCTCATAATGTAATACCAGAGGTCAG
CGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAACTATGTAGGGTACAACGAACAATTCT
TTCATAAGTTAATCTTTGTATTTTTTTTTCAAAAAAAAAAAAAAAAAAACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13177#0      TACTACTGCCATATTATACTTTCAACTACCTTGTGAGCTCAAACGCTGAAGGCGCATCAA 60
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      GTCAATTGGCAGACAACAGTTTACTTGTTCTGCTTATTCTGATCCACTACCGGAAGTGCA 120
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TTACGATGAGCGAATCCTTTCCAAGCAGTAATGTCTACACAAGCGATTTAAATACCAATG 180
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TCAAGGATGCACCGGCTTTTCATGATAATCCATATTACAAGGCCTTAAGCAATGCCAAAG 240
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      ACAGTCAATATGATCGTGCTGATGTTGAAGGAAATGCTCAAAATGGGCTAGTTGTCAGGT 300
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TGTCTTTTGCATCGCTATTTGACGCTCTTGGCACATGCTTAAAAGATGAGAGCTCGGTTC 360
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TACTGCTCTATTCTTTGGTCCATGGGAACTGTGACTTTCAGGAATATGTTCTGGTTCGAA 420
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      CAGACCTGGATACTTTGCTGATGCCTATCTTGGAAATGCTCTACAATGCATCAAGAAAGA 480
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      CCTCCAATCAGATATACATGCTATTGATAGTTCTTCTTATACTCAGTCAAGATTCAACCT 540
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TCAATGCTAGTGTACACAAATTGGTGCTTCCGAGCGTCCCTTGGTACCATGAGCGCCTTA 600
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TGCATCAAACTTCTTTGGGATCTTTGATGGTTGTTATACTAATCCGAACCATCAAATACA 660
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      ACCTCTCCAAACTGCGAGATGTCTACCTTCATACAAACTGCCTTGCAATTCTAGCAAATA 720
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TGGCCCCTCATGTGCATAGGCTGAGTGCATATGCATCTCAAAGGCTGGTTAGCCTCTTTG 780
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      ACATGCTCTCTCGCAAGTATACCAAATTAGCCGAGTTAAAAAATGACAAAGCTATCAAAG 840
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TTATATCTGATCAGATTGAAGCAGACAACATCTCAGATGATACGTCCACAGAACTTCACA 900
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TCTATACCGACTTCTTAAGAATTGTTCTAGAAATCATCAATGCAATTCTTACATATGCAT 960
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TGCCTAGAAATCCTGAGGTCGTGTATGCTATCTTGCATCGACAAGAGGTATTTCAGCCAT 1020
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TCAAAAACCATCCCCGCTTCAATGAATTGCTTGAGAATATTTACACAGTGTTGGATTTCT 1080
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      TCAATAGTCGAATGGACATGCAGCAGTTAGATGGAGAATGGTCTGTAGATAAGGTTCTTG 1140
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      AGGTTATTAACAAAAACTGCCGTTCATGGCGTGGAGAAGGAATGAAGATGTTTACCCAGT 1200
consensus_13177#1      --------------------------TGGCGTGGAGAAGGAATGAAGATGTTTACCCAGT 34
                                                 **********************************

consensus_13177#0      TACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGC 1260
consensus_13177#1      TACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGC 94
                       ************************************************************

consensus_13177#0      GCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGG 1320
consensus_13177#1      GCGTTGTCCTATCACGAGGATTCTCTTTCAATCCTGGTGCAATAAATCTGTTCCCTGTGG 154
                       ************************************************************

consensus_13177#0      AGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGT 1380
consensus_13177#1      AGATTCATGTTGATGATGAACCATCCGGTGAACAAAAGGTCTAAGAATAATCTTGAATGT 214
                       ************************************************************

consensus_13177#0      TGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACA 1440
consensus_13177#1      TGAGTTCTGACTACAGCAGGATGACATGTTCCATCCACCGAGGCAAATAGATATTGTACA 274
                       ************************************************************

consensus_13177#0      TAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTT 1500
consensus_13177#1      TAGGAGGCATATACCAGACGATCGACATGTATTCTTATTCATTTGTGTATATTTCCGTTT 334
                       ************************************************************

consensus_13177#0      CCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAA 1560
consensus_13177#1      CCTCATAATGTAATACCAGAGGTCAGCGGGAGGAGAGAGCGGTATTTAGGTGGCAGAGAA 394
                       ************************************************************

consensus_13177#0      CTATGTAGGGTACAACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTCATCT 1620
consensus_13177#1      CTATGTAGGGTACAACGAACAATTCTTTCATAAGTTAATCTTTGTATTTTTTTTTCAAAA 454
                       *********************************************************   

consensus_13177#0      CTTATCACCTCTGACGCGGGAAGGCCACTCTGGTGTTTTAACATGTCTACCGTACCGTCG 1680
consensus_13177#1      ------------AAAAAAAAAAAAAAACTC------------------------------ 472
                                    *      **    ****                              

consensus_13177#0      GTCGGTTTTCCTGTGAGAGGCCTGAACCGTTCTCTTGAATGTTGCCTCAGTTCGAAGATA 1740
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      ACCTGCTACTCCGTCGGTGTTTCAACAAGCATGCTGGAAGGGCAGAAAAAGGAAAGCGTG 1800
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      CGAGAAGAGTTTATAGACCAAGGAACCGACGGTTTCATTAATCGGAAGCTATTCCATTTT 1860
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      ATTCACTTTCTGGCTTCCAGAAACAAGTACTGGTAAAAGAAAAAAATGTTTCATGTGTCT 1920
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      GAAAAGTAGTCAGGTACCTTCATTTTGATGAAATATCAAAAGTTGAAATGTACTACGGTG 1980
consensus_13177#1      ------------------------------------------------------------
                                                                                   

consensus_13177#0      ATTGGAAGGCATTACAACTTTACAAGTGCAC 2011
consensus_13177#1      -------------------------------