cluster # 13178

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13178 cluster # 13178 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13178#0 length = 2205 sequences # 8

consensus_13178#1 length = 743 sequences # 4

consensusID : consensus_13178#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2205
fasta sequence

                              [TCCCTTTCTCGTCAGAAGGCTCACTCCGTCTCCCCCTCCGGCCGCCGCAAGGAGAAGCAGCAGCAGCGATGCAGGCCGCCGCCGGGCGCGCGCGCCGCCTCCTCACGTCGCCGGCGGCCTCCGGTATCCTCTCCGCGCCGCGCCCCGGGTGCGC-GGCGCTCGCCGGGAGCGGCGCCCTTCTTCCCCGTCTCGATGGTGTCCCGTCCTCGCCGTCGCCGTCACCGGCCCCTCCGCTCCTGGCTAGGAGCTTCTCCGCCACGTCCTCGTCTCGCCTACCCCGTAACTTGCTATCGCCAAGTATATCTTCTCAATGGCGGAATGAGAAATCGGTGTGCTATCACATGGCTGCAACTCACTACTCAACAGAAGCAAGTGACATTGATCAACCTACAGAGGCTGTAGTGGAGCTGTATCAGAAAATGTTGAAATCTGTTGAAGCCGAGACCATGCCTCCGAATGCCTGGTTGTGGTCAATGATAAGTAGCTGTTCCAATAAGGAGGACATCAAACTACTTATTCAGATTTTGCAGAAGCTAAGAGTATTTAGACTATCAAATCTTCGCATCGACGCAAACTTCAACGATCATCTTTGCATGAAAGTTGCAGAGGCTTGTGCTCGTGTTGGTGCCCTTGACTATGGTTTGAAGGTTTTATGGAAGCATAATGTTTATGGAATTACGCCTACCATTGGTTCTGCTCATTATCTACTGAAACATGCTAAAGAGAAAAATGACACTAAACTAATGGGAAGTATAATGCAAGTCCTTCAGAGAAATTCGATGCCATTGCAACCAGGCACTGCTGATATAGTCTTCAGCATCTGCTATAATGCTGATAGAT-GGGATTTACTCTCAAAATATGCGAGAAGATTCGTGAAGTCTGAAGTCAAGCTGCATGGTGCTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTTGGAGACTCCCAATCTATATGGAACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAGGTTTTGCATGTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGATTAAATTACTTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCCAGAAGCTTGTTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGGAGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCATGTCAAAGCTGCGCCTTGATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAGAAGTAACACAGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGACAATATCACAGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCTGCCCGACAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCATGACAGTTTTGTAGAAAACCTTGGTGAAATTGCACGCATGAAATTCAGGTATGC-CCGGCGACGCCCGGACCAGAGGCGGAAGGACTCGCCGCCGGTGGTAAGTTCGCCGGCTTCAATAGGCTTCCCTGAAGGCCATGGCAATGTATAGCAAAGTAGCTTGAGATTGCAGGTTCACAAGACGTATTAACCCCACAACTGATCAACCTTTATTGGCGGGAAAGGAAGGCTGATCGCTTAATTAGCCGCTTCAGTTGCACAGTAACTGAGGAACCGAAAGTGGGTGCAGTGCAAAACTGCAAATAGTAGCTGTGGAATTTGCAAACTGAAAGGGCACATGCATGCATGGCCCAAGCCCAACTAGCTTTAAGGCCCTGTTTGTGGAGCTTCTAGCTGCTGCAGCTTCTCCGAGAATCAGAAACTCCCCCAAACAGTTCAGCTTTTGGTGTAAATTCTGAGAAGCTGTAGTTGTAGAATCCAGAAAATGAACTAGAAGCTAGAAGCTGGGAAACTTAGCTTTTCCAGATTCTTAGAAGCTGGCTACCAATCAGCTGCTTCTCAGAATCTTAAGCTCCCCCCACGCGTTGTGAAATTTGTTTTTCACCCTTAGATATTCTTTGGCTTCTAGGTTGTATTGGGGTGTAACATTTGCGATTCTATTTGATCATGGACAGCTTTGCGGGCTTCAAATTCAGCGTGTAAAATGAGA]

[+] EMBL AK101682             [TCCCTTTCTCGTCAGAAGGCTCACTCCGTCTCCCCCTCCGGCCGCCGCAAGGAGAAGCAGCAGCAGCGATGCAGGCCGCCGCCGGGCGCGCGCGCCGCCTCCTCACGTCGCCGGCGGCCTCCGGTATCCTCTCCGCGCCGCGCCCCGGGTGTGC GGCGCTCGCCGGGAGCGGCGCCCTTCTTCCCCGTCTCGATGGTGTCCCGTCCTCGCCGTCGCCGTCACAGGCCCCTCCGCTCCTGGCTAGGAGCTTCTCCGCCACGTCCTCGTCTCGCCTACCCCGTAACTTGCTATCGCCAAGTATATCTTCTCAATGGCGGAATGAGAAATCGGTGTGCTATCACATGGCTGCAACTCACTACTCAACAGAAGCAAGTGACATTGATCAACCTACAGAGGCTGTAGTGGAGCTGTATCAGAAAATGTTGAAATCTGTTGAAGCCGAGACCATGCCTCCGAATGCCTGGTTGTGGTCAATGATAAGTAGCTGTTCCAATAAGGAGGACATCAAACTACTTATTCAGATTTTGCAGAAGCTAAGAGTATTTAGACTATCAAATCTTCGCATCGACGCAAACTTCAACGATCATCTTTGCATGAAAGTTGCAGAGGCTTGTGCTCGTGTTGGTGCCCTTGACTATGGTTTGAAGGTTTTATGGAAGCATAATGTTTATGGAATTACGCCTACCATTGGTTCTGCTCATTATCTACTGAAACATGCTAAAGAGAAAAATGACACTAAACTAATGGGAAGTATAATGCAAGTCCTTCAGAGAAATTCGATGCCATTGCAACCAGGCACTGCTGATATAGTCTTCAGCATCTGCTATAATGCTGATAGAT GGGATTTACTCTCAAAATATGCGAGAAGATTCGTGAAGTCTGAAGTCAAGCTGCATGGTGCTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTTGGAGACTCCCAATCTATATGGAACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAGGTTTTGCATGTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGATTAAATTACTTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCCAGAAGCTTGTTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGGAGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCATGTCAAAGCTGCGCCTTGATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAGAAGTAACACAGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGACAATATCACAGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCTGCCCGACAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCACGACAGTTTTGTAGAAAACCTTGGTGAAATTGCACGCATGAAATTCAGGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK102839             [                  GCTCACTCCGTCTCCCCCTCCGGCCGCCGCAAGGAGAAGCAGCAGCAGCGATGCAGGCCGCCGCCGGGCGCGCGCGCCGCCTCCTCACGTCGCCGGCGGCCTCCGGTATCCTCTCCGCGCCGCGCCCCGGGTGCGC GGCGCTCGCCGGGAGCGGCGCCCTTCTTCCCCGTCTCGATGGTGTCCCGTCCTCGCCGTCGCCGTCACCGGCCCCTCCGCTCCTGGCTAGGAGCTTCTCCGCCACGTCCTCGTCTCGCCTACCCCGTAACTTGCTATCGCCAAGTATATCTTCTCAATGGCGGAATGAGAAATCGGTGTGCTATCACATGGCTGCAACTCACTACTCAACAGAAGCAAGTGACATTGATCAACCTACAGAGGCTGTAGTGGAGCTGTATCAGAAAATGTTGAAATCTGTTGAAGCCGAGACCATGCCTCCGAATGCCTGGTTGTGGTCAATGGTAAGTAGCTGTTCCAATAAGGAGGACATCAAACTACTTATTCAGATTTTGCAGAAGCTAAGAGTATTTAGACTATCAAATCTTCGCATCGACGCAAACTTCAACGATCATCTTTGCATGAAAGTTGCAGAGGCTTGTGCTCGTGTTGGTGCCCTTGACTATGGTTTGAAGGTTTTATGGAAGCATAATGTTTATGGAATTACGCCTACCATTGGTTCTGCTCATTATCTACTGAAACATGCTAAAGAGAAAAATGACACTAAACTAATGGGAAGTATAATGCAAGTCCTTCAGAGAAATTCGATGCCATTGCAACCAGGCACTGCTGATATAGTCTTCAGCATCTGCTATAATGCTGATAGAT GGGATTTACTCTCAAAATATGCGAGAAGATTCGTGAAGTCTGAAGTCAAGCTGCATGGTGCTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTTGGAGACTCCCAATCTATATGGAACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAGGTTTTGCATGTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGATTAAATTACTTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCCAGAAGCTTGTTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGGAGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCATGTCAAAGCTGCGCCTTGATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAGAAGTAACACAGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGACAATATCACAGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCTGCCCGACAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCATGACAGTTTTGTAGAAAACCTTGGTGAAATTGCACGCATGAAATTCAGGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK059051             [                   CTCACTCCGTCTCCCCCTCCGGCCGCCGCAAGGAGAAGCAGCAGCAGCGATGCAGGCCGCCGCCGGGCGCGCGCGCCGCCTCCTCACGTCGCCGGCGGCCTCCGGTATCCTCTCCGCGCCGCGCCCCGGGTGCGC GGCGCTCGCCGGGAGCGGCGCCCTTCTTCCCCGTCTCGATGGTGTCCCGTCCTCGCCGTCGCCGTCACCGGCCCCTCCGCTCCTGGCTAGGAGCTTCTCCGCCACGTCCTCGTCTCGCCTACCCCGTAACTTGCTATCGCCAAGTATATCTTCTCAATGGCGGAATGAGAAATCGGTGTGCTATCACATGGCTGCAACTCACTACTCAACAGAAGCAAGTGACATTGATCAACCTACAGAGGCTGTAGTGGAGCTGTATCAGAAAATGTTGAAATCTGTTGAAGCCGAGACCATGCCTCCGAATGCCTGGTTGTGGTCAATGATAAGTAGCTGTTCCAATAAGGAGGACATCAAACTACTTATTCAGATTTTGCAGAAGCTAAGAGTATTTAGACTATCAAATCTTCGCATCGACGCAAACTTCAACGATCATCTTTGCATGAAAGTTGCAGAGGCTTGTGCTCGTGTTGGTGCCCTTGACTATGGTTTGAAGGTTTTATGGAAGCATAATGTTTATGGAATTACGCCTACCATTGGTTCTGCTCATTATCTACTGAAACATGCTAAAGAGAAAAATGACACTAAACTAATGGGAAGTATAATGCAAGTCCTTCAGAGAAATTCGATGCCATTGCAACCAGGCACTGCTGATATAGTCTTCAGCATCTGCTATAATGCTGATAGAT GGGATTTACTCTCAAAATATGCGAGAAGATTCGTGAAGTCTGAAGTCAAGCTGCATGGTGCTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTTGGAGACTCCCAATCTATATGGAACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAGGTTTTGCATGTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGATTAAATTACTTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCCAGAAGCTTGTTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGGAGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCATGTCAAAGCTGCGCCTTGATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAGAAGTAACACAGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGACAATATCACAGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCTGCCCGACAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCATGACAGTTTTGTAGAAAACCTTGGTGAAATTGCACGCATGAAATTCAGGTATGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB651950             [                                CCCCCCTTGAAGGCGCAAGGAGAAGCAGCAGCAGCGATGCAGGCCGCCGCCGGGCGCGCGCGCCGCCTCCTCACGTCGCCGGCGGCCTCCGGTATCCTCTCCGCGCCGCGCCCCGGGTGCGC GGCGCTCGCCGGGAGCGGCGCCCTTCTTCCCCGTCTCGATGGTGTCCCGTCCTCGCCGTCGCCGTCACCGGCCCCTCCGCTCCTGGCTAGGAGCTTCTCCGCCACGTCCTCGTCTCGCCTACCCCGTAACTTGCTATCGCCAAGTATATCTTCTCAATGGCGGAATGAGAAATCGGTGTGCTATCACATGGCTGCAACTCACTACTCAACAGAAGCAAGTGACATTGATCAACCTACAGAGGCTGTAGTGGAGCTGTATCAGAAAATGTTGAAATCTGTTGAAGCCGAGACCATGCCTCCGAATGCCTGGTTGTGGTCAATGATAAGTAGCTGTTCCAATAAAAAGGACATCAAACTACTTATTCAGATTTTGCAGAAGCTAAGAGTATTTAGACTATCAAATCTTCGCATCGACGCAAACTTCAACGATCATCTTTGCATGAAAGTTGCAGAGGCTTGTGCTCGTGTTGGTGCCCTTGACTATGGTTTGAAGGTTTTATGGAAGCATAATGTTTATGGAATTACGCCTACCATTGGTTCTGCTCATTATCTACTGAAACATGCTAAAGAGAAAAATGACACTANACTAATGGGAAGTATAATGCAAGTCCTTCAGAGAAATTCGATGCCATTGCAACCAGGCACTGCTGATATAGTCTTCAGCATCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU184315             [                                         CCGCCGCAAGGAGAAGCAGCAGCAGCGATGCAGGCCGCCGCCGGGCGCGCGCGCCGCCTCCTCACGTCGCCGGCGGCCTCCGGTATCCTCTCCGCGCCGCGCCCCGGGTGCGCNGGCGCTCGCCGGGAGCGGCGCCCTTCTTCCCCGTCTCGATGGTGTCCCGTCCTCGCCGTCGCCGTCACCGGCCCCTCCGCTCCTGGCTAGGAGCTTCTCCGCCACGTCCTCGTCTCGCCTACCCCGTAACTTGCTATCGCCAAGTATATCTTCTCAATGGCGGAATGAGAAATCGGTGTGCTATCACATGGCTGCAACTCACTACTCAACAGAAGCAAGTGACATTGATCAACCTACAGAGGCTGTAGTGGAGCTGTATCAGAAAATGTTGAAATCTGTTGAAGCCGAGACCATGCCTCCGAATGCCTGGTTGTGGTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF324418             [                                                                                                                                                                                                                                                                                                                                                                                                                                 AAAATGTTGAAATCTGTTGAAGCCGAGACCATGCCTCCGAATGCCTGGTTGTGGTCAATGATAAGTAGCTGTTCCAATAAGGAGGACATCAAACTACTTATTCAGATTTTGCAGAAGCTAAGAGTATTTAGACTATCAAATCTTCGCATCGACGCAAACTTCAACGATCATCTTTGCATGAAAGTTGCAGAGGCTTGTGCTCGTGTTGGTGCCCTTGACTATGGTTTGAAGGTTTTATGGAAGCATAATGTTTATGGAATTACGCCTACCATTGGTTCTGCTCATTATCTACTGAAACATGCTAAAGAGAAAAATGACACTAAACTAATGGGAAGTATAATGCAAGTCCTTCAGAGAAATTCGATGCCATTGCAACCAGGCACTGCTGATATAGTCTTCAGCATCTGCTATAATGCTGATAGATGGGGATTTACTCTCAGAATATGCGAGAAGATTCGTGAAGTCTGAAGTCAAGCTGCATGGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB684262             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGCTAAGAGTATTTAGACTATCAAATCTTCGCATCGACGCAAACTTCAACGATCATCTTTGCATGAAAGTTGCAGAGGCTTGTGCTCGTGTTGGTGCCCTTGACTATGGTTTGAAGGTTTTATGGAAGCATAATGTTTATGGAATTACGCCTACCATTGGTTCTGCTCATTATCTACTGAAACATGCTAAAGAGAAAAATGACACTAAACTAATGGGAAGTATAATGCAAGTCCTTCAGAGAAATTCGATGCCATTGCAACCAGGCACTGCTGATATAGTCTTCAGCATCTGCTATAATGCTGATAGAT GGGATTTACTCTCAAAATATGCGAGAAGATTCGTGAAGTCTGAAGTCAAGCTGCATGGTGCTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTTGGAGACTCCCAATCTATATGGAACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAGGTTTTGCATGTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGATTAAATTACTTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCCAGAAGCTTGTTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGGAGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCATGTCAAAGCTGCGCCTTGATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK064146             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGCCATTGCAACCAGGCACTGCTGATATAGTCTTCAGCATCTGCTATAATGCTGATAGAT GGGATTTACTCTCAAAATATGCGAGAAGATTCGTGAAGTCTGAAGTCAAGCTGCATGGTGCTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTCGGAGACTCCCAATCTATATGGAACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAGGTTTTGCATGTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGATTAAATTACTTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCCAGAAGCTTGTTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGGAGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCATGTCAAAGCTGCGCCTTGATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAGAAGTAACACAGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGACAATATCACAGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCTGCCCGACAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCATGACAGTTTTGTAGAAAACCTTGGTGAAATTGCACGCATGAAATTCA GACGGCGCCGGCGACGCCCGGACCAGAGGCGGAAGGACTCGCCGCCGGTGGTAAGTTCGCCGGCTTCAATAGGCTTCCCTGAAGGCCATGGCAATGTATAGCAAAGTAGCTTGAGATTGCAGGTTCACAAGACGTATTAACCCCACAACTGATCAACCTTTATTGGCGGGAAAGGAAGGCTGATCGCTTAATTAGCCGCTTCAGTTGCACAGTAACTGAGGAACCGAAAGTGGGTGCAGTGCAAAACTGCAAATAGTAGCTGTGGAATTTGCAAACTGAAAGGGCACATGCATGCATGGCCCAAGCCCAACTAGCTTTAAGGCCCTGTTTGTGGAGCTTCTAGCTGCTGCAGCTTCTCCGAGAATCAGAAACTCCCCCAAACAGTTCAGCTTTTGGTGTAAATTCTGAGAAGCTGTAGTTGTAGAATCCAGAAAATGAACTAGAAGCTAGAAGCTGGGAAACTTAGCTTTTCCAGATTCTTAGAAGCTGGCTACCAATCAGCTGCTTCTCAGAATCTTAAGCTCCCCCCACGCGTTGTGAAATTTGTTTTTCACCCTTAGATATTCTTTGGCTTCTAGGTTGTATTGGGGTGTAACATTTGCGATTCTATTTGATCATGGACAGCTTTGCGGGCTTCAAATTCAGCGTGTAAAATGAGA]




>consensus_13178#0
TCCCTTTCTCGTCAGAAGGCTCACTCCGTCTCCCCCTCCGGCCGCCGCAAGGAGAAGCAG
CAGCAGCGATGCAGGCCGCCGCCGGGCGCGCGCGCCGCCTCCTCACGTCGCCGGCGGCCT
CCGGTATCCTCTCCGCGCCGCGCCCCGGGTGCGCGGCGCTCGCCGGGAGCGGCGCCCTTC
TTCCCCGTCTCGATGGTGTCCCGTCCTCGCCGTCGCCGTCACCGGCCCCTCCGCTCCTGG
CTAGGAGCTTCTCCGCCACGTCCTCGTCTCGCCTACCCCGTAACTTGCTATCGCCAAGTA
TATCTTCTCAATGGCGGAATGAGAAATCGGTGTGCTATCACATGGCTGCAACTCACTACT
CAACAGAAGCAAGTGACATTGATCAACCTACAGAGGCTGTAGTGGAGCTGTATCAGAAAA
TGTTGAAATCTGTTGAAGCCGAGACCATGCCTCCGAATGCCTGGTTGTGGTCAATGATAA
GTAGCTGTTCCAATAAGGAGGACATCAAACTACTTATTCAGATTTTGCAGAAGCTAAGAG
TATTTAGACTATCAAATCTTCGCATCGACGCAAACTTCAACGATCATCTTTGCATGAAAG
TTGCAGAGGCTTGTGCTCGTGTTGGTGCCCTTGACTATGGTTTGAAGGTTTTATGGAAGC
ATAATGTTTATGGAATTACGCCTACCATTGGTTCTGCTCATTATCTACTGAAACATGCTA
AAGAGAAAAATGACACTAAACTAATGGGAAGTATAATGCAAGTCCTTCAGAGAAATTCGA
TGCCATTGCAACCAGGCACTGCTGATATAGTCTTCAGCATCTGCTATAATGCTGATAGAT
GGGATTTACTCTCAAAATATGCGAGAAGATTCGTGAAGTCTGAAGTCAAGCTGCATGGTG
CTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTTGGAGACTCCCAATCTATATGGA
ACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAGGTTTTGCAT
GTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGATTAAATTAC
TTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCCAGAAGCTTG
TTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGG
AGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCATGTCAAAGCTGCGCCTTG
ATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAGAAGTAACAC
AGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGACAATATCAC
AGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCT
GCCCGACAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCAT
GACAGTTTTGTAGAAAACCTTGGTGAAATTGCACGCATGAAATTCAGGTATGCCCGGCGA
CGCCCGGACCAGAGGCGGAAGGACTCGCCGCCGGTGGTAAGTTCGCCGGCTTCAATAGGC
TTCCCTGAAGGCCATGGCAATGTATAGCAAAGTAGCTTGAGATTGCAGGTTCACAAGACG
TATTAACCCCACAACTGATCAACCTTTATTGGCGGGAAAGGAAGGCTGATCGCTTAATTA
GCCGCTTCAGTTGCACAGTAACTGAGGAACCGAAAGTGGGTGCAGTGCAAAACTGCAAAT
AGTAGCTGTGGAATTTGCAAACTGAAAGGGCACATGCATGCATGGCCCAAGCCCAACTAG
CTTTAAGGCCCTGTTTGTGGAGCTTCTAGCTGCTGCAGCTTCTCCGAGAATCAGAAACTC
CCCCAAACAGTTCAGCTTTTGGTGTAAATTCTGAGAAGCTGTAGTTGTAGAATCCAGAAA
ATGAACTAGAAGCTAGAAGCTGGGAAACTTAGCTTTTCCAGATTCTTAGAAGCTGGCTAC
CAATCAGCTGCTTCTCAGAATCTTAAGCTCCCCCCACGCGTTGTGAAATTTGTTTTTCAC
CCTTAGATATTCTTTGGCTTCTAGGTTGTATTGGGGTGTAACATTTGCGATTCTATTTGA
TCATGGACAGCTTTGCGGGCTTCAAATTCAGCGTGTAAAATGAGA

consensusID : consensus_13178#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 743
fasta sequence

                              [TGCATGGTGCTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTTGGAGACTCCCAATCTATATGGAACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAGGTTTTGCATGTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGATTAAATTACTTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCCAGAAGCTTGTTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGGAGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCAT-GTCAAAGCTGCGCCTTGATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAGAAGTAACACAGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGAC-AATATCACAGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCTGCCCGACAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCATGACAGTTTTGTAGGAAAACCTTGGTG-AAATTGCACGCATGAAA-TTCAGGTATGCATTCTCGGACATTTTGAA---AAAAAAAAGGGNGGCCGCACCGGGTGGNGCTCCAGTTTTTGTCCCTTTNGGTGGGGGTTATT]

[-] EMBL CB684263             [TGCATGGTGCTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTTGGAGACTCCCAATCTATATGGAACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAGGTTTTGCATGTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGATTAAATTACTTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCCAGAAGCTTGTTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGGAGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCAT GTCAAAGCTGCGCCTTGATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAGAAGTAACACAGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGAC AATATCACAGTCCAGCCATTTGTATTCGACTACATTTTATTTGATGGGTAGCACACTAGCACTAGCCTGCCCGACAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCATGACAGTTTTGTAGAAAACCCTTGGTG AAATTGCACGCATGAAA TTAGGGTATGCATTCTCGGACA                                                                        ]
[+] EMBL AU184316             [                                                                                                                                                                                                                                                       TGNTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGGAGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCAT GTCAAAGCTGCGCCTTGATATTTNTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATNAGAAGTAACACAGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGAC AATATCACAGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCTGCCCGNCAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCATGACAGTTTTGTA GAAAACCTTGGTG AAATTGCACGCATGAAA TTCAGGTATGCATTNTCGGACATTTTGAA   AAAAA                                                         ]
[+] EMBL AU066333             [                                                                                                                                                                                                                                                                           AGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGGAGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCAT GTCAAAGCTGCGCCTTGATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAGAAGTAACACAGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGAC AATATCACAGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCTGCCCGACAATANCATGTATACANCACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCATGACAGTTTTGTAGGAAAACCTTGGTG AAATTGCACGCATGAAACTTCAGGTATGCATTCTCGGGCAAAAAAAA   AAAAAAAAGGGNGGCCGCACCGGGTGGNGCTCCAGTTTTTGTCCCTTTNGGTGGGGGTTATT]
[+] EMBL BI810735             [                                                                                                                                                                                                                                                                                                                   GGAGGAAGCTTGGATTACAGATATCCCTCAAATGATCAGTTCCGTGGTCAAAGCTGCCCCTTGATATTTCGGTGAATTTGGAGAAGCTTACCTCTCAACCTGAACCAGCATGAGAAGTAACGCAGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGACAAATATCACAGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCTGCCCGACAATAACATGTATACAACACATTCCGGTGTTTACCTT CCATGTGCTTTTCCATGACAGTTTTGTA GAAAACCTTGGTGAAAATTGCACGCATGAAA TTCAGGTATGCATTCTCGGACATTTTGAACCCAAAAAAAAaa                                                    ]




>consensus_13178#1
TGCATGGTGCTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTTGGAGACTCCCAAT
CTATATGGAACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAG
GTTTTGCATGTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGA
TTAAATTACTTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCC
AGAAGCTTGTTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGA
AGGCGCTGGAGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCATGTCAAAGC
TGCGCCTTGATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAG
AAGTAACACAGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGA
CAATATCACAGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAG
CACTAGCCTGCCCGACAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTG
CTTTTCCATGACAGTTTTGTAGGAAAACCTTGGTGAAATTGCACGCATGAAATTCAGGTA
TGCATTCTCGGACATTTTGAAAAAAAAAAGGGNGGCCGCACCGGGTGGNGCTCCAGTTTT
TGTCCCTTTNGGTGGGGGTTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13178#0      TCCCTTTCTCGTCAGAAGGCTCACTCCGTCTCCCCCTCCGGCCGCCGCAAGGAGAAGCAG 60
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      CAGCAGCGATGCAGGCCGCCGCCGGGCGCGCGCGCCGCCTCCTCACGTCGCCGGCGGCCT 120
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      CCGGTATCCTCTCCGCGCCGCGCCCCGGGTGCGCGGCGCTCGCCGGGAGCGGCGCCCTTC 180
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      TTCCCCGTCTCGATGGTGTCCCGTCCTCGCCGTCGCCGTCACCGGCCCCTCCGCTCCTGG 240
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      CTAGGAGCTTCTCCGCCACGTCCTCGTCTCGCCTACCCCGTAACTTGCTATCGCCAAGTA 300
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      TATCTTCTCAATGGCGGAATGAGAAATCGGTGTGCTATCACATGGCTGCAACTCACTACT 360
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      CAACAGAAGCAAGTGACATTGATCAACCTACAGAGGCTGTAGTGGAGCTGTATCAGAAAA 420
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      TGTTGAAATCTGTTGAAGCCGAGACCATGCCTCCGAATGCCTGGTTGTGGTCAATGATAA 480
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      GTAGCTGTTCCAATAAGGAGGACATCAAACTACTTATTCAGATTTTGCAGAAGCTAAGAG 540
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      TATTTAGACTATCAAATCTTCGCATCGACGCAAACTTCAACGATCATCTTTGCATGAAAG 600
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      TTGCAGAGGCTTGTGCTCGTGTTGGTGCCCTTGACTATGGTTTGAAGGTTTTATGGAAGC 660
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      ATAATGTTTATGGAATTACGCCTACCATTGGTTCTGCTCATTATCTACTGAAACATGCTA 720
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      AAGAGAAAAATGACACTAAACTAATGGGAAGTATAATGCAAGTCCTTCAGAGAAATTCGA 780
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      TGCCATTGCAACCAGGCACTGCTGATATAGTCTTCAGCATCTGCTATAATGCTGATAGAT 840
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      GGGATTTACTCTCAAAATATGCGAGAAGATTCGTGAAGTCTGAAGTCAAGCTGCATGGTG 900
consensus_13178#1      ---------------------------------------------------TGCATGGTG 9
                                                                          *********

consensus_13178#0      CTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTTGGAGACTCCCAATCTATATGGA 960
consensus_13178#1      CTTCATTTGACATTTGGATGGACTTCGCTGCCAAAGTTGGAGACTCCCAATCTATATGGA 69
                       ************************************************************

consensus_13178#0      ACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAGGTTTTGCAT 1020
consensus_13178#1      ACATCAATAGCCTGAGAGGCAAGTCAGTCAAACGCTATAATCTTGCAACAGGTTTTGCAT 129
                       ************************************************************

consensus_13178#0      GTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGATTAAATTAC 1080
consensus_13178#1      GTGTAAAGGGGTTTCTGCTTGAGCGCAAACCAGAAAGCGCCGCTGCCATGATTAAATTAC 189
                       ************************************************************

consensus_13178#0      TTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCCAGAAGCTTG 1140
consensus_13178#1      TTCACAAGCATTCACCTGATGAGAAGAAACAATTGGTGACGGATGAGCTCCAGAAGCTTG 249
                       ************************************************************

consensus_13178#0      TTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGG 1200
consensus_13178#1      TTGCTGAATGGCCAGCAGAGGTGATAAAAAGGCAGAAGAAAGATGATAGGAAGGCGCTGG 309
                       ************************************************************

consensus_13178#0      AGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCATGTCAAAGCTGCGCCTTG 1260
consensus_13178#1      AGGAAGCTTTGATTACAGATATCCCTCAAATGATCAGTTCCATGTCAAAGCTGCGCCTTG 369
                       ************************************************************

consensus_13178#0      ATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAGAAGTAACAC 1320
consensus_13178#1      ATATTTCTGTGAATTTGGAGAAGCTTACCTCTCAACCTGAAACAGCATGAGAAGTAACAC 429
                       ************************************************************

consensus_13178#0      AGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGACAATATCAC 1380
consensus_13178#1      AGGTGCCCAGATGGCCTAGCAGCTGAAATTACATGAGTACAGGCAGGCGGACAATATCAC 489
                       ************************************************************

consensus_13178#0      AGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCT 1440
consensus_13178#1      AGTCCAGCCATTTGTATTCGACTACATTCTATTTGATGGGTAGCACACTAGCACTAGCCT 549
                       ************************************************************

consensus_13178#0      GCCCGACAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCAT 1500
consensus_13178#1      GCCCGACAATAACATGTATACAACACATTCCGTTGTTTACCTTGCCATGTGCTTTTCCAT 609
                       ************************************************************

consensus_13178#0      GACAGTTTTGTAG-AAAACCTTGGTGAAATTGCACGCATGAAATTCAGGTATGC--CCGG 1557
consensus_13178#1      GACAGTTTTGTAGGAAAACCTTGGTGAAATTGCACGCATGAAATTCAGGTATGCATTCTC 669
                       ************* ****************************************   *  

consensus_13178#0      CGACGCCCGGACCAGAGGCGGAAGGACTCGCCGCCGGTGGTAAGTTCGCCGGCTTCAATA 1617
consensus_13178#1      GGACATTTTGAAAAAAAAAAGGGNGGC-CGCACCGGGTGGNG----CTCCAGTTTTTGTC 724
                        ***     **  * *    *   * * ***  * *****      * ** * **   * 

consensus_13178#0      GGCTTCCCTGAAGGCCATGGCAATGTATAGCAAAGTAGCTTGAGATTGCAGGTTCACAAG 1677
consensus_13178#1      CCTTTNGGTGGGGGTTATT----------------------------------------- 743
                          **   **  **  **                                          

consensus_13178#0      ACGTATTAACCCCACAACTGATCAACCTTTATTGGCGGGAAAGGAAGGCTGATCGCTTAA 1737
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      TTAGCCGCTTCAGTTGCACAGTAACTGAGGAACCGAAAGTGGGTGCAGTGCAAAACTGCA 1797
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      AATAGTAGCTGTGGAATTTGCAAACTGAAAGGGCACATGCATGCATGGCCCAAGCCCAAC 1857
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      TAGCTTTAAGGCCCTGTTTGTGGAGCTTCTAGCTGCTGCAGCTTCTCCGAGAATCAGAAA 1917
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      CTCCCCCAAACAGTTCAGCTTTTGGTGTAAATTCTGAGAAGCTGTAGTTGTAGAATCCAG 1977
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      AAAATGAACTAGAAGCTAGAAGCTGGGAAACTTAGCTTTTCCAGATTCTTAGAAGCTGGC 2037
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      TACCAATCAGCTGCTTCTCAGAATCTTAAGCTCCCCCCACGCGTTGTGAAATTTGTTTTT 2097
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      CACCCTTAGATATTCTTTGGCTTCTAGGTTGTATTGGGGTGTAACATTTGCGATTCTATT 2157
consensus_13178#1      ------------------------------------------------------------
                                                                                   

consensus_13178#0      TGATCATGGACAGCTTTGCGGGCTTCAAATTCAGCGTGTAAAATGAGA 2205
consensus_13178#1      ------------------------------------------------