cluster # 13181

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Oryza sativa
cluster # 13181 cluster # 13181 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13181#0 length = 2389 sequences # 11

consensus_13181#1 length = 460 sequences # 1

consensusID : consensus_13181#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 2389
fasta sequence

                              [GGAGCGAAGCGAAGCGAGGGGAGTAGTAGTGCTACTTATATTATTATTTTTTTCTTTTCTCACCCGCTTTTATACCCACACCCTCTCTCTCTCTCTCTCTCCTCTCCTTCCCTCTTCTCTCGCAATCGCATCGCACCCCCTCCCCCCCGAGCTTGACTCCGGAAACCCTAGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGAGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCGGAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCCGCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAGCTAGGAAGGATGATCATGTTACGTTTTGCTCAAGATTTTGCTTCACACTGATAAGATCTCAGCATTTGGATGATTAACGCATATTGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTCAGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCATGGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGTTTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCG---AGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTT-CCTTCAACGCCGCCTGCTATATCCAGAGCAGATCCTTCATCATCCTCCAGGGGGCATTCTCTACCAACAGATGCAGACTCAATGAGGAAAGCACGTCGATCACCAGGGTATCAACTGTATAGACAGGTCTCCGACAGCAAGATTCCATCTCTCAGGTCTCTCAACGAGGGCGCCTCTCCTGAAGGAAGGCCATCCTCCTCCATGCTCTCAGTCTGCAGCAACGATTTATCTGCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGTCAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGAGAGATGGTCAGTTGATAGTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTACTACACATTCACCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGTCCACATGGAATGCTCAGGAACTGGCTGTTGTTGCTGTTTTATTGTGCGGCCATGTTTACCATGCTGACTGTTTGGATAGCTTAACTGCAGAAGCTGACAAATATGATCCCCCTTGTCCTGTATGCACCCATGGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAAAGAACAAGATACCTAAAAATGTGATAGTTGATGTTAATCTAGATGGGAGCTCTAAGCATCAGAAGGAAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTAGCTTGAAGGGCTCGTTTAGTCGCCCGTTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATCCCAGTCAATTTCAGAGAGCGAGTCTGCCAGAAAGAAGGGCTTCTGGG-CAAGGCACTGGAGGGAATAGCATAA-CTGCCAGTCATCATCGAGAAATCCCTCTT-GAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGCATGCGGGA-G-CTGAAGTCAAGCCGAATCGGTG-CA-AATGATATGACATGGCTGTTGAACGACCTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATTCGGCCGCAAGCACTTGTCGTGCTGGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGAGGTTTATTTCAGAGCCCA-GTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCTTCAGAGTTGAGACCGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCCAGCAATC-TAGTTACTATGTTTTGTGGTTTTGTATTATTGGTTATGTGCCCCCTTTATTTTATGGTTGCAAATTCATATAGTTTGGGAACTTGCGTACATAGGGGGAATCTTAACTCGGGAGATGCTATTTATTCAAAAAAAAGGTCACAGAAGGCATGTAACGGTTATGTAATGTTGTTTGTCATCTTCGCAGACGTGGTAGTATGATGGTCATGCATGTTTTTAAAAA]

[-] EMBL AK062597             [GGAGCGAAGCGAAGCGAGGGGAGTAGTAGTGCTACTTATATTATTATTTTTTTCTTTTCTCACCCGCTTTTATACCCACACCCTCTCTCTCTCTCTCTCTCCTCTCCTTCCCTCTTCTCTCGCAATCGCATCGCACCCCCTCCCCCCCGAGCTTGACTCCGGAAACCCTAGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGAGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCGGAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCCGCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL AA753994             [                                                                                    tttttttTCTCTCTCTCCTCTCCTTCCCTCTTCTCTCGCAATCGCATCGCACCCCCTCCCCCCCGAGCTTGACTCCGGAAACCCTAGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGANGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGANCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAAGCGGAAGCGGANGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGANGGCGCCGCTCTGATCGGTGCTCCGACTCCGANTGGTTCTAAGCTAGGAAGGATGATCATGTTACGTTTTGCTCAAGATTTTGCTTCCCACTGATAAGATCTCAGCATTTGGATGATTAACGCATATTGAATTCTTTCTCNATAAACATGGGAACTAATTGCTGTNTA CTGCNAAAAAAAGCCCancat                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK102361             [                                                                                                            TCCCTCTTCTCTCGCAATCGCATCGCACCCCCTCCCCCCCGAGCTTGACTCCGGAAACCCTAGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGAGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCGGAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCCGCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAGCTAGGAAGGATGATCATGTTACGTTTTGCTCAAGATTTTGCTTCACACTGATAAGATCTCAGCATTTGGATGATTAACGCATATTGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTCAGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCATGGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGTTTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCGAGCAGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTT CCTTCAACGCCGCCTGCTATATCCAGAGCAGATCCTTCATCATCCTCCAGGGGGCATTCTCTACCAACAGATGCAGACTCAATGAGGAAAGCACGTCGATCACCAGGGTATCAACTGTATAGACAGGTCTCCGACAGCAAGATTCCATCTCTCAGGTCTCTCAACGAGGGCGCCTCTCCTGAAGGAAGGCCATCCTCCTCCATGCTCTCAGTCTGCAGCAACGATTTATCTGCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGTCAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGAGAGATGGTCAGTTGATAGTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTACTACACATTCACCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGTCCACATGGAATGCTCAGGAACTGGCTGTTGTTGCTGTTTTATTGTGCGGCCATGTTTACCATGCTGACTGTTTGGATAGCTTAACTGCAGAAGCTGACAAATATGATCCCCCTTGTCCTGTATGCACCCATGGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAAAGAACAAGATACCTAAAAATGTGATAGTTGATGTTAATCTAGATGGGAGCTCTAAGCATCAGAAGGAAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTAGCTTGAAGGGCTCGTTTAGTCGCCCGTTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATCCCAGTCAATTTCAGAGAGCGAGTCTGCCAGAAAGAAGGGCTTCTGGG CAAGGCACTGGAGGGAATAGCATAA CTGCCAGTCATCATCGAGAAATCCCTCTT GAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGCATGCGGGA G CTGAAGTCAAGCCGAATCGGTG CA AATGATATGACATGGCTGTTGAACGACCTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATTCGGCCGCAAGCACTTGTCGTGCTGGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGAGGTTTATTTCAGAGCCCA GTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCTTCAGAGTTGAGACCGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCCAGCAATC TAGTTACTATGTTTTGTGGTTTTGTATTATTGGTTATGTGCCCCCTTTATT                                                                                                                                                                           ]
[+] EMBL CB660087             [                                                                                                                                                                        TAGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGAGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCGGAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCCGCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAGCTAGGAAGGATGATCATGTTACGTTTTGCTCAAGATTTTGCTTCACACTGATAAGATCTCAGCATTTGGATGATTAACGCATATTGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTCAGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCATGGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGTTTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCG   AGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTT CCTTNCACGCCGCCTGCTATATCCAGAGCAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CB625948             [                                                                                                                                                                         AGGCAGCCCAGCCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTGAGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCGGAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCCGCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAGCTAGGAAGGATGATCATGTTACGTTTTGCTCAAGATTTTGCTTCACACTGATAAGATCTCAGCATTTGGATGATTAACGCATATTGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTCAGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCATGGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGTTTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCGAGCAGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTTCCCTTC ACGCCGCCTGCTATATCCAGAGCAGATCCTTCATCATCCTCCAGGGGGCATTCTCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF324306             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             gATTGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTCAGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCATGGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGTTTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCG   AGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTT CCTTC ACGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB649113             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAACTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATAAATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCG   AGGTAGATCCACCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTGTGGCTTCAGATTCGAAGATGTCAATCTCTGTT CCTTCAACGCCGCCTGCTATATCCAGAGCAGATCCTTCATCATCCTCCAGGGGGCATTCTCTACCAACAGATGCAGATTCAATGAGGAAAGCACGTCGATCACCAGGGTATCAACTGTATAGACAGGTCTCCGACAGCAAGATTCCATCTCTCAGGTCTCTCAACGAGGGCGCCTCTCCTGAAGGAAGGCCATCCTCCTCCATGCTCTCAGTCTGCAGCAACGATTTATCTGCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGTCAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGAGAGATGGTCAGTTGATAGTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTACTACACATTCACCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGTCCACATGGAATGCTCAGGAACTGGCTGTTGTTGCTGTTTTATTGTGCGGCCATGTTTACCATGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA763918             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CACGTCGATCACCAGGGTATCAACTGTATAGACAGGTCTCCGACAGCAAGATTCCATCTCTCAGGTCTCTCAACGAGGGCGCCTCTCCTGAAGGAAGGCCATCCTCCTCCATGCTCTCAGTCTGCAGCAACGATTTATCTGCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGTCAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGAGAGATGGTCAGTTGATAGTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTACTACACATTCATCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGTCCACATGGAATGCTCAGGAACTGGCTGTTGTTGCTGTTTTGTTGTGCGGCCATGTTTACCATGCTGACTGTTTGGATAGCTTAACTGCAGAAGCTGACAAATATGATCCCCCTTGTCCTGTATGCACCCATGGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAAAGAACAAGATACCTAAAAATGTGATAGTTGATGTCAATCTAGATGGGAGCTCTAAGCATCAGAAGGGAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTGGCTTGAAGGGCTCGGTTAGTCGCCCGNTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATNCCAGTCAATTTCAGAGAGCGAGTCTGNCAGAAAGAAGGGCTTCTGGGCCAAGGCACTGGANGGAATAGCATAA CTGGCAGTCATCATCGAAAAATCCCTCTT GAANAGGAGCTGTACTTCCCANCGAGAACAAGCATGCNGGANA CTGAANTCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CB649114             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAAAGAACAAGATACCTAAAAATGTGATAGTTGATGTTAATCTAGATGGGAGCTCTAAGCATCAGAAGGAAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTAGCTTGAAGGGCTCGTTTAGTCGCCCGTTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATCCCAGTCAATTTCAGAGAGCGAGTCTGCCAGAAAGAAGGGCTTCTGGG CAAGGCACTGGAGGGAATAGCATAA CTGCCAGTCATCATCGAGAAATCCCTCTT GAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGCATGCGGGA G CTGAAGTCAAGCCGAATCGGTG CA AATGATATGACATGGCTGTTGAACGACCTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATTCGGCCGCAAGCACTTGTCGTGCTGGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGAGGTTTATTTCAGAGCCCA GTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCTTCAGAGTTGAGACCGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCCAGCAATC TAGTTACTATGTTTTGTGGTTTTGTATTATTGGTTATGTGCCCCCTTTATTTTATGGTTGCAAATTCATATAGTTTGGGAACTTGCGTACATAGGGGGAATCTTAACTCGGGAGATGCTATTTATTCAAAAAAAAGG                                                                                     ]
[-] EMBL CB625978             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTGGAATCAAAGACAAAGAACAAGATGCCTAAAAATGTGATAGTTGATGTTAATCTAGAGGGGAGCTCTAAGCATCAGAAGGGAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTAGCTTGAAGGGCTCGTTTAGTCGCCCGTTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATCCCAGTCAATTTCAGAGAGCGAGTCTGCCAGAAAGAAGGGCTTCTGGG CAAGGCACTGGAGGGAATAGCATAA CTGCCAGTCATCATCGAGAAATCCCTCTT GAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGCATGCGGGA G CTGAAGTCAAGCCGAATCGGTG CA AATGATATGACATGGCTGTTGAACGACCTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATTCGGCCGCAAGCACTTGTCGTGCTGGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGAGGTTTATTTCAGAGCCCA GTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCTTCAGAGTTGAGACCGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCCAGCAATCTTAGTTACTATGTTTTGTGGTTTTGTATTATTGGAAAGGTGCCCCCTTTATTTTATGGTTGCAAATTCA ATAaaaaaga                                                                                                                                               ]
[+] EMBL BM038680             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          gTCT GG CAA GCACTGGAGGGAATAGCATAACCTGCCAGTCATCATCGAG AATCCCTCTTNGAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGCAT CGGGA GTCTGAAGTCAAACCGAATCGGTGCCACAATGATATGACATGGCTGTTG ACGACCTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATTC GCCGCAAGCACTT TCGTGCTGGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGAGGTTTATTTCAGAGCCCANGTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCTTCAGAGTTGAGACCGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCCAGCAATCTTAGTTACTATGTTTTGTGGTTTTGTATTATTGGTTATGTGCCCCCTTTATTTTATGGTTGCAAATTCATATAGTTTGGGAACTTGCGTACATATTTGGAATCTTAACTCGGGAGATGCTATTTATGCATGACACGCATCACAGAAGGCATGTAACGGTTATGTAATGTTGTTTGTCATCTTCGCAGACGTGGTAGTATGATGGTCATGCATGTTTTTAAAAA]




>consensus_13181#0
GGAGCGAAGCGAAGCGAGGGGAGTAGTAGTGCTACTTATATTATTATTTTTTTCTTTTCT
CACCCGCTTTTATACCCACACCCTCTCTCTCTCTCTCTCTCCTCTCCTTCCCTCTTCTCT
CGCAATCGCATCGCACCCCCTCCCCCCCGAGCTTGACTCCGGAAACCCTAGGCAGCCCAG
CCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTG
AGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCG
GAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCC
GCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAGCTAGGAAGGATGATCATGTTACGT
TTTGCTCAAGATTTTGCTTCACACTGATAAGATCTCAGCATTTGGATGATTAACGCATAT
TGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTC
AGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCAT
GGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGT
TTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAA
CTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATA
AATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCGAGGTAGATCCA
CCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTG
TGGCTTCAGATTCGAAGATGTCAATCTCTGTTCCTTCAACGCCGCCTGCTATATCCAGAG
CAGATCCTTCATCATCCTCCAGGGGGCATTCTCTACCAACAGATGCAGACTCAATGAGGA
AAGCACGTCGATCACCAGGGTATCAACTGTATAGACAGGTCTCCGACAGCAAGATTCCAT
CTCTCAGGTCTCTCAACGAGGGCGCCTCTCCTGAAGGAAGGCCATCCTCCTCCATGCTCT
CAGTCTGCAGCAACGATTTATCTGCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGT
CAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGAGAGATGGTCAGTTGATA
GTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTA
CTACACATTCACCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGT
CCACATGGAATGCTCAGGAACTGGCTGTTGTTGCTGTTTTATTGTGCGGCCATGTTTACC
ATGCTGACTGTTTGGATAGCTTAACTGCAGAAGCTGACAAATATGATCCCCCTTGTCCTG
TATGCACCCATGGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAA
AGAACAAGATACCTAAAAATGTGATAGTTGATGTTAATCTAGATGGGAGCTCTAAGCATC
AGAAGGAAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTAGCTTGAAGGGCTCGTTTA
GTCGCCCGTTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATCCCAGTCAATTTCAG
AGAGCGAGTCTGCCAGAAAGAAGGGCTTCTGGGCAAGGCACTGGAGGGAATAGCATAACT
GCCAGTCATCATCGAGAAATCCCTCTTGAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGC
ATGCGGGAGCTGAAGTCAAGCCGAATCGGTGCAAATGATATGACATGGCTGTTGAACGAC
CTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATTCGGCCGCAAGCACTTGTCGTGCT
GGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGAGGTTTAT
TTCAGAGCCCAGTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCT
TCAGAGTTGAGACCGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCC
AGCAATCTAGTTACTATGTTTTGTGGTTTTGTATTATTGGTTATGTGCCCCCTTTATTTT
ATGGTTGCAAATTCATATAGTTTGGGAACTTGCGTACATAGGGGGAATCTTAACTCGGGA
GATGCTATTTATTCAAAAAAAAGGTCACAGAAGGCATGTAACGGTTATGTAATGTTGTTT
GTCATCTTCGCAGACGTGGTAGTATGATGGTCATGCATGTTTTTAAAAA

consensusID : consensus_13181#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [ATCGAGTATCCCTCTTGAAGAGGACCTGTACTCCCAAGCGTAGTAGCATAGCCATGCGGGACTGAAGTCAACCGAATCGGTGCAAATGATATGACATGGCTGTTGCAACGACACTCCGCATTGAAGGTTTCTCCTAGCCATGAGTGCATGATTGCGGCCGCAAGCACCTGTGGTGCGTGCTGGGAAAGGGTGCTCGATAGTGAGAATGAACAGTTGGATGATAGTGATACCTGATGCAACTGGAGGGTTTATTTGCAGAGCCCAGTGCGCACGTGTTGAGTGAGCGAGTAATGCTAACAGAAAAAGGGGATCGATGGCCCTTCAGAGTTGGAGACCGAAGGTCCATTGCTGTGTGTGCAAGGTTATATATAATCCAGCGTCCCAGCAATCTTAGTTACTATTTTTGTGTTTTGTATTATTGGTTATGGTCCCCCCTTTAGTTTATGTTCCAAATTCATAT]

[+] EMBL BI801732             [ATCGAGTATCCCTCTTGAAGAGGACCTGTACTCCCAAGCGTAGTAGCATAGCCATGCGGGACTGAAGTCAACCGAATCGGTGCAAATGATATGACATGGCTGTTGCAACGACACTCCGCATTGAAGGTTTCTCCTAGCCATGAGTGCATGATTGCGGCCGCAAGCACCTGTGGTGCGTGCTGGGAAAGGGTGCTCGATAGTGAGAATGAACAGTTGGATGATAGTGATACCTGATGCAACTGGAGGGTTTATTTGCAGAGCCCAGTGCGCACGTGTTGAGTGAGCGAGTAATGCTAACAGAAAAAGGGGATCGATGGCCCTTCAGAGTTGGAGACCGAAGGTCCATTGCTGTGTGTGCAAGGTTATATATAATCCAGCGTCCCAGCAATCTTAGTTACTATTTTTGTGTTTTGTATTATTGGTTATGGTCCCCCCTTTAGTTTATGTTCCAAATTCATAT]




>consensus_13181#1
ATCGAGTATCCCTCTTGAAGAGGACCTGTACTCCCAAGCGTAGTAGCATAGCCATGCGGG
ACTGAAGTCAACCGAATCGGTGCAAATGATATGACATGGCTGTTGCAACGACACTCCGCA
TTGAAGGTTTCTCCTAGCCATGAGTGCATGATTGCGGCCGCAAGCACCTGTGGTGCGTGC
TGGGAAAGGGTGCTCGATAGTGAGAATGAACAGTTGGATGATAGTGATACCTGATGCAAC
TGGAGGGTTTATTTGCAGAGCCCAGTGCGCACGTGTTGAGTGAGCGAGTAATGCTAACAG
AAAAAGGGGATCGATGGCCCTTCAGAGTTGGAGACCGAAGGTCCATTGCTGTGTGTGCAA
GGTTATATATAATCCAGCGTCCCAGCAATCTTAGTTACTATTTTTGTGTTTTGTATTATT
GGTTATGGTCCCCCCTTTAGTTTATGTTCCAAATTCATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13181#0      GGAGCGAAGCGAAGCGAGGGGAGTAGTAGTGCTACTTATATTATTATTTTTTTCTTTTCT 60
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      CACCCGCTTTTATACCCACACCCTCTCTCTCTCTCTCTCTCCTCTCCTTCCCTCTTCTCT 120
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      CGCAATCGCATCGCACCCCCTCCCCCCCGAGCTTGACTCCGGAAACCCTAGGCAGCCCAG 180
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      CCATCTCAGCTCTCGGCGACGGCGAGGCGGCGCTCGCTGGGGGTGCGGCCGCGGCGGCTG 240
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      AGCTTTTGCCAGATCCGGACCACCGCCCCCAGTTCCGGCGCCGCGGCGGCGGCGGAGGCG 300
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      GAGGCGGAGGTGTGGGAGTCGTTGGCGATTCGGCCCCGGGGGTGGGTGGGAGAGGGCGCC 360
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      GCTCTGATCGGTGCTCCGACTCCGAGTGGTTCTAAGCTAGGAAGGATGATCATGTTACGT 420
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      TTTGCTCAAGATTTTGCTTCACACTGATAAGATCTCAGCATTTGGATGATTAACGCATAT 480
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      TGAATTCTTTCTCAATAAACATGGGAGCTAATTGCTGTATAGCTGCAAAAGAGAGGCCTC 540
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      AGCCATGTGTTACTCCAATTGAAGTGTCAGCATTCAGGAACGTAAGACACTCTCCATCAT 600
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      GGAGCTTCCGGTGGGATAACCGCACACACATAGAAGACATAATGGAAATGCCCGCATTGT 660
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      TTTCCAACCATAGTAGTGGAAGCATTCGGCCTGAAACAAAGAGTGGCTCAATTGCGCCAA 720
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      CTGATGGCTTTTCTAACGGAGGCAGCCCTTCTGATATGTTCAACAAGCTCAAGTGCCATA 780
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      AATCTGACAGGAAGAGGGAGTCATCTAAGATTGCGAGATCTGACCTTCGAGGTAGATCCA 840
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      CCACAAGCAATTCTTCCCCTGAGGCAAAGCTTTCCAGAAAATCGCTAGACACAGTAAGTG 900
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      TGGCTTCAGATTCGAAGATGTCAATCTCTGTTCCTTCAACGCCGCCTGCTATATCCAGAG 960
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      CAGATCCTTCATCATCCTCCAGGGGGCATTCTCTACCAACAGATGCAGACTCAATGAGGA 1020
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      AAGCACGTCGATCACCAGGGTATCAACTGTATAGACAGGTCTCCGACAGCAAGATTCCAT 1080
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      CTCTCAGGTCTCTCAACGAGGGCGCCTCTCCTGAAGGAAGGCCATCCTCCTCCATGCTCT 1140
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      CAGTCTGCAGCAACGATTTATCTGCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGT 1200
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      CAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGAGAGATGGTCAGTTGATA 1260
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      GTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTA 1320
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      CTACACATTCACCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGT 1380
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      CCACATGGAATGCTCAGGAACTGGCTGTTGTTGCTGTTTTATTGTGCGGCCATGTTTACC 1440
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      ATGCTGACTGTTTGGATAGCTTAACTGCAGAAGCTGACAAATATGATCCCCCTTGTCCTG 1500
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      TATGCACCCATGGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAA 1560
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      AGAACAAGATACCTAAAAATGTGATAGTTGATGTTAATCTAGATGGGAGCTCTAAGCATC 1620
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      AGAAGGAAAGTAGGAGAGAGCCCAGATTAGGCACAAGTTCTAGCTTGAAGGGCTCGTTTA 1680
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      GTCGCCCGTTTTTGAGAAGGCATTTCTCTATTGGCTCTCGGCCATCCCAGTCAATTTCAG 1740
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      AGAGCGAGTCTGCCAGAAAGAAGGGCTTCTGGGCAAGGCACTGGAGGGAATAGCATAACT 1800
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      GCCAGTCATCATCGAGAAATCCCTCTTGAAGAGGAGCTGTACTCCCAAGCG----AGAGC 1856
consensus_13181#1      ----------ATCGAGTA-TCCCTCTTGAAGAGGACCTGTACTCCCAAGCGTAGTAGCAT 49
                                 ****** * **************** ***************    **   

consensus_13181#0      AAGCATGCGGGAGCTGAAGTCAAGCCGAATCGGTGCAAATGATATGACATGGCTGTTG-A 1915
consensus_13181#1      AGCCATGCGGGA-CTGAAGTCAA-CCGAATCGGTGCAAATGATATGACATGGCTGTTGCA 107
                       *  ********* ********** ********************************** *

consensus_13181#0      ACGAC-CTCCGCATTGAAGGTTTCTCCTAGCCATAGTCATATT----CGGCCGCAAGCAC 1970
consensus_13181#1      ACGACACTCCGCATTGAAGGTTTCTCCTAGCCATGAGTGCATGATTGCGGCCGCAAGCAC 167
                       ***** ****************************      **     *************

consensus_13181#0      TTGT----CGTGCTGG-AAAGGGT-CTCGATAGT-AGAAT-AACAGTTGAT--ATAGT-A 2019
consensus_13181#1      CTGTGGTGCGTGCTGGGAAAGGGTGCTCGATAGTGAGAATGAACAGTTGGATGATAGTGA 227
                        ***    ******** ******* ********* ***** ********    ***** *

consensus_13181#0      TACT--ATGCAACTGA--GGTTTATTT-CAGAGCCCAGT-CGCA---GTTTAGT-AGCGA 2069
consensus_13181#1      TACCTGATGCAACTGGAGGGTTTATTTGCAGAGCCCAGTGCGCACGTGTTGAGTGAGCGA 287
                       ***   *********   ********* *********** ****   *** *** *****

consensus_13181#0      GTAAT-CTAACAGAAAAAGGGGAT-GATGGCC-TTCAGAGTTG-AGACCGAAGGTCCATT 2125
consensus_13181#1      GTAATGCTAACAGAAAAAGGGGATCGATGGCCCTTCAGAGTTGGAGACCGAAGGTCCATT 347
                       ***** ****************** ******* ********** ****************

consensus_13181#0      GCTGTGT-TGCAAGGTTATATATAATCCAGCGTCCCAGCAATCT-AGTTACTATGTTTTG 2183
consensus_13181#1      GCTGTGTGTGCAAGGTTATATATAATCCAGCGTCCCAGCAATCTTAGTTACTAT-TTTTG 406
                       ******* ************************************ ********* *****

consensus_13181#0      TGGTTTTGTATTATTGGTTATG-TGCCCCCTTTATTTTATGGTTGCAAATTCATATAGTT 2242
consensus_13181#1      TG-TTTTGTATTATTGGTTATGGTCCCCCCTTTAGTTTATG-TTCCAAATTCATAT---- 460
                       ** ******************* * ********* ****** ** ***********    

consensus_13181#0      TGGGAACTTGCGTACATAGGGGGAATCTTAACTCGGGAGATGCTATTTATTCAAAAAAAA 2302
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      GGTCACAGAAGGCATGTAACGGTTATGTAATGTTGTTTGTCATCTTCGCAGACGTGGTAG 2362
consensus_13181#1      ------------------------------------------------------------
                                                                                   

consensus_13181#0      TATGATGGTCATGCATGTTTTTAAAAA 2389
consensus_13181#1      ---------------------------