These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1097 fasta sequence [CACATAAAACTATATCATCATCTTCCATAGCTGTACACATCCTATATTTTCATTCATGGCGATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCG-CAGCCATGCGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGCCATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCAGCAACA-ACAACAACAAAACATCATGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCTTCGGTGAATCGTCTTCCCA-CTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCT-CCAACAAGGACCTGC-C-TAAACCA-CCCTT-CATCCACAAC-GGCTTGTTGCAGTTCTC-TTCAGTGGGGTTGAAT-GGTGATGGGTATAATTACTTGATCCTTGATC-ACCTTGAGCCTCCAGC-AATGGAGTATCCTAATGTTGACATTGGTAAT-GTTGATGATGCTGCTGCTGCTGATGATGAT-CCGGGTGACCTTGATGAGGAGA-TTGATGATAGCATGC-AAAGAAACCATGG-TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT-GGTTTAATTTGCTGGAG-ATTTGAGTTAAATATCAGATAATAAAATAATAATACAAAGAATAAAAAG-AAAACAAACCTGTATAGTTAGCAGGTT-TTGATTCCTTTCG-TTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACCAAACATG-CCTTGGCGAGGCTTTCTATTTGTATATAG-CTTTTTTTCTTTTTTCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATG-CAATTT-ATGTAAAAAA] [+] EMBL AK107283 [CACATAAAACTATATCATCATCTTCCATAGCTGTACACATCCTATATTTTCATTCATGGCGATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCG CAGCCATGCGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGCCATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCAGCAACA ACAACAACAAAACATCATGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCTTCGGTGAATCGTCTTCCCA CTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCT CCAACAAGGACCTGC C TAAACCA CCCTT CATCCACAAC AGCTTGTTGCAGTTCTC TTCAGTGGGGTTGAAT GGTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCAGC AATGGAGTATCCTAATGTTGGCATTGGTAAT GTTGATGATGCTGCTGCTGGTACTGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGC AAAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT GGT TTTGCGGGAG ATTTGAGTTAAATATCAGATAATAAAATAATAATACAAAGAATAAAAAGAAAAACAAACCTGTATAGTTAGCAGGTT TTGATTCATTTCG TTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACCAAACATG CCTTGGCGAGGCTTTCTATTTGTATATAG CTTTTTTTCTTTTTTCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATG CAATTT ATGTAAca ] [+] EMBL AU174431 [ ATATCATCATCTTCCATAGCTGTACACATCCTATATTTTCATTCATGGCGATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCG CAGCCATGCGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGCCATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCA ] [+] EMBL CB096250 [ acTAT ATCATCTTCCATAGCTGTACACATCCTATATTTTCATTCATGGCAATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCG CAGCCATGCGTTACTCCCGACATCACCGATATCGACGTTTACAACGTCGACCCGTGGCAGCTTCCAGCCATGGCGATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCGGCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACAAAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGGTTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCAGCAACA ACAACAACAAAACATCATGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCTTCGGTGAATCGTCTTCCCA CTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCT CCAACAAGGACCTGC C TAAACCA CCCTT CATCCACAAC GGCTTGTTGCAGTTCTC TTCAGTGGGGTTGAATGGGTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTNCAGC TATGGAGTATCCTAATGGTGACATTGGTAATGGTTGATGATGCTGCTGCTGCTGATGATGATNCCGGGTGACCNTGATGAGGAGA TTGATGATAGCATGC AAAGAAANCATGG TGGCTAGAATTAACCAGTAGCATCATGAGNGGATGGGTTTAANTTGCTGGGGNATTTGAGNTNAAAATCAG ] [+] EMBL AA751268 [ CATCTTCCATAGCTGTACACATCCTATATTTTCATTCATGGCAATGACACCGCAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCGTCAGCCATGGCTTACTCCCGACATCACCGATATCGAC ] [+] EMBL BI801387 [ GAGGTTCTTCTTCTACCTC GCCACCACCAACCATCGGGCAGCAACATACAACGAC AAACATCATGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGC GCAGT CCGTCGTCTTCTTCGGTGAATCGTCTTCCCA CTGATGATCTCACGGAAGAGATGGTTCTGTGTAGGATCT CC ACAAGGACCTGC C TAAACCA CCCTT CATCCACAAC GGCTTGTT CAGTTCTC TTCAGTGGGGTTGAAT GGTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCAGC AATGGAGTATCCTAATGTTGACATTGGTAAT GTTGATGATGCTGCTGCTGCTGATGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGC AAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT GGTTTAATTTGCTGGAG ATTTGAGTTAAATATCAGATAATAAAATAATAATAC AAGAAAAAAAAa ] [+] EMBL BI804344 [ GTCTTCCCAGCTGATGATCTCACGGAAGAGATGGT CTGTGTAGGATCTCCCATCAAGGACCTGCAC TAAACCA CCCTT CATCCACAAC GGCTTGTTGCAGTTCTC TTCAGTGGGGTTGAAT GGTGATGGGTATAATTACTTGATCCTTGATCAACCTTGAGCCTCCAGC CATGGAGTATCCTAATGTTGACCTTGGTAAT GTTGATGATGCTGCTGCTGCTGATGATGAT CCGGGTGACCTTGATGAGGAGACTTGATGATAGCATGC CAAGAAACCCTGGCTGGCTAGAATTAACCCGTAGCATCATGAGTGAAT GGTTTAATTTGCTGGAG ATTTGAGTTAAATATCAGATAAT AAATAATAATACCAAGAAT AAAAG AAAACCAACCTGTATAGTTACCCGGTTCTTGATTCCTTTCGCTTGAAaaaaaaaa ] [+] EMBL AA752403 [ cgagAGGATCT CCAACAAGGACCTGC C TAAACCA CCCTT CATCCACAAC GGCTTGTTGCAGTTCTC TTCAGTGGGGTTGAAT GGTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCAGC AATGGAGTATCCTAATGTTGACATTGGTAAT GTTGATGATGCTGCTGCTGCTGATGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGC AAAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT G ] [+] EMBL BI802185 [ ACCTGC CTTAACCCACCCCTTGCAGCCACAACAGGCTT TT CAATTCTCTTTCAGT GGGTTGAAT GTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCAGCAAATGGAGTATCCTAATGTTGACATTGGTAAT GTTGATGATGCTGCTGCTGCTGATGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGCAAAAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT GGTTTAATTTGCTGGAG ATTTGAGTTAAATATCAGATAATAAAATAATAATACAAAGAATAAAAAG AAAAC AACCTGTATAGTTA CAGGTT TTGATTCCTTTCG TTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACCAAACATGCCCTTGGCGAGGCTTTCTATTTGTATATA TTTTTT TTCTTCCTA TGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATGCCAATTTAATGTAAAAAA] [+] EMBL BI804022 [ GCTT TTCCAGTTCTC TTCAGT GGGTTGAAT GGTGATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCA C AATGGAGTATCCTAATGTTGACATTGGTAAT GTTGATGATGCTGCTGCTGCTGATGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGC AAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT GGTTTAATTTGCTGGAG ATTTGAGTTAAATATCAGATAATAAAATAATAATACCAAGAATAAAAAG AAAAC AACCTGTATAGTTAGCAGGTT TTGATTCCTTTCG TTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACC AACATG CCTTGGCGAGGCTTTCTATTTGTATATAGTTTTTTTTTCTTTTTCCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTAT C ATTT ATGTAAAAAA] [+] EMBL AU174432 [ ATGGGTATAATTACTTGATCCTTGATC ACCTTGAGCCTCCAGC AATGGAGTATCCTAATGTTGGCATTGGTAAT GTTGATGATGCTGCTGCTGGTACTGATGAT CCGGGTGACCTTGATGAGGAGA TTGATGATAGCATGC AAAGAAACCATGG TGGCTAGAATTAACCAGTAGCATCATGAGTGAAT GGT TTTGCGGGAG ATTTGAGTTAAATATCAGATAATAAAATAATAATACAAAGAATAAAAAGAAAAACAAACCTGTATAGTTAGCAGGTT TTGATTCATTTCG TTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACCAAACATG CCTTGGCGAGGCTTTCTATTTGTATATAG CTTTTTTTCTTTTTTCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATG CAATTT ATGTAAAAAA] consensusID : consensus_13186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [CGTGGGATGGTATTCTTCCCGGAATAGAGATTGGGCTCCCTGTGTAGGTATCCTCCACACCAGAGGACCTGCCTATAGCCCCACCCTTCATCCACAAACGGCTTGTGCGCACAGTTCTCTTCAGTGGGGTTGAATGGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCAGCAATGGAGTATCCTAATGTTGACATTGGTAATGTTGATGATGCTGCTGCTGCTGATGATGATCCGGGTGACCTTGATGAGGAGATTGATGATAGCATCAAGAAACCATGGTGGCTAGAATTAACCAGTAGCATCATGAGTGAATGGTTTAATTTGCTGGAGATTTGAGTTAAATATCAGATAATAAAATAATAATACCAAGAATAAAAAGAAAACCAACCTGTATAGTTACAGGTTTTGATTCCTTTCGTTGAACTTTGTGTGCTTGTTAGCTACCCTATATACCCAACATCCCTTGGCGAGCCTTTCTATTTGTATATAGTTTTTTTTTCTTTTTCCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATCCATTTATGTAAAAAA] [+] EMBL BI804043 [CGTGGGATGGTATTCTTCCCGGAATAGAGATTGGGCTCCCTGTGTAGGTATCCTCCACACCAGAGGACCTGCCTATAGCCCCACCCTTCATCCACAAACGGCTTGTGCGCACAGTTCTCTTCAGTGGGGTTGAATGGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCAGCAATGGAGTATCCTAATGTTGACATTGGTAATGTTGATGATGCTGCTGCTGCTGATGATGATCCGGGTGACCTTGATGAGGAGATTGATGATAGCATCAAGAAACCATGGTGGCTAGAATTAACCAGTAGCATCATGAGTGAATGGTTTAATTTGCTGGAGATTTGAGTTAAATATCAGATAATAAAATAATAATACCAAGAATAAAAAGAAAACCAACCTGTATAGTTACAGGTTTTGATTCCTTTCGTTGAACTTTGTGTGCTTGTTAGCTACCCTATATACCCAACATCCCTTGGCGAGCCTTTCTATTTGTATATAGTTTTTTTTTCTTTTTCCTATTGTAAGGTTCGAACTCTATTGAGTTGATTGAATAAACATTATCCATTTATGTAAAAAA] consensusID : consensus_13186#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [GGCAATGACACCGCAGCGAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCGCACCGATCGGTTACTCCCGACATCACCGATATCGTCGTTTACAACGGACCCGTGGCACGTTCAGCATGGCATGTATGGATCGATCCTGTCCGGTA] [+] EMBL AA749963 [GGCAATGACACCGCAGCGAGCTAGCATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGCCGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCGTACCGCTGCGCACCGATCGGTTACTCCCGACATCACCGATATCGTCGTTTACAACGGACCCGTGGCACGTTCAGCATGGCATGTATGGATCGATCCTGTCCGGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13186#0 ------------------------------------------------------------ consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 CGTGGGATGGTATTCTTCCCGGAATAGAGATTGGGCTCCCTGTGTAGGTATCCTCCACAC 60 consensus_13186#0 --CACATAAAACTATATCATCATCTTCCATAGCTGTACACATCCTATATTTTCATTCATG 58 consensus_13186#2 -----------------------------------------------------------G 1 consensus_13186#1 CAGAGGACCTGCCTATAGCCCCACCCTTCATCCACAAACGGCTTGTGCGCACAGTTCTCT 120 consensus_13186#0 GCGATGACACCGCAGC----TAG-CATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGC 113 consensus_13186#2 GCAATGACACCGCAGCGAGCTAG-CATTTTCTCGCATGCCTCCAGGGTTTCGGTTCCAGC 60 consensus_13186#1 TCAGTGGGGTTGAATGGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCT--C 178 * ** * * * * ** * * *** * * * * * consensus_13186#0 CGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCG-TACCGCTGC-GCAGCCATG 171 consensus_13186#2 CGACGGACGAGCAGCTTGTCGTCGACTACTTGCAGAGGCG-TACCGCTGC-GCACCGATC 118 consensus_13186#1 CAGCAATGGAGTATCCTAATGTTGAC-ATTGGTAATGTTGATGATGCTGCTGCTGCTGAT 237 * * *** * * * ** *** * * * * * * * ***** ** * consensus_13186#0 CGTTACTCC--CGACATCACCGAT---ATCGACGTTTACAACGTCGACCCGTGGCAGC-- 224 consensus_13186#2 GGTTACTCC--CGACATCACCGAT---ATCGTCGTTTACAACG--GACCCGTGGCA-C-- 168 consensus_13186#1 GATGATCCGGGTGACCTTGATGAGGAGATTGATGATAGCATCAAGAAACCATGGTGGCTA 297 * * * *** * ** ** * * * ** * * ** *** * consensus_13186#0 --TTCCAGCCATGGCG--ATGTATGGATCGGATCATGACCGGTACTTCTTCACGATGGCG 280 consensus_13186#2 --GTTCAGC-ATGGC---ATGTATGGATCG-ATCCTGTCCGGTA---------------- 205 consensus_13186#1 GAATTAACCAGTAGCATCATGAGTGAATGGTTTAATTTGCTGGAGATTTGAGTTAAATAT 357 * * * * ** *** ** ** * * * * * * consensus_13186#0 GCCCGAGAGGCGCAGGCCAGACGAACGACACCGTCGGGTTTCTGGAAGCCCACCGGCACA 340 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 CAGATAATAAAATAATAATACCAAGAATAAAAAGAAAACCAACCTGTATAGTTACAGGTT 417 consensus_13186#0 AAGAAGACGATCTTCGTCGTCGCCGGTGGGCATGAGGTGCCCACCGCCGTCAAGAGGAGG 400 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 TTGATTCCTTTCGTTGAACTTTGTGTGCTTGTTAGCTACCCTATATACCCAACATCCCTT 477 consensus_13186#0 TTCGTCTTCTACCTCGGCCACCACCAACCATCGGGCAGCAACAACAACAACAAAACATCA 460 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 GGCGAGCCTTTCTATTTGTATATAGTTTTTTTTTCTTTTTCCTATTGTAAGGTTCGAACT 537 consensus_13186#0 TGGATCATGCATGAGTACCGTCTCATGAACTCTCCAAGAGCGGCAGTGCCGTCGTCTTCT 520 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 CTATTGAGTTGATTGAATAAACATTATCCATTTATGTAAAAAA----------------- 580 consensus_13186#0 TCGGTGAATCGTCTTCCCACTGATGATCTCACGGAAGAGATGGTGCTGTGTAGGATCTCC 580 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 ------------------------------------------------------------ consensus_13186#0 AACAAGGACCTGCCTAAACCACCCTTCATCCACAACGGCTTGTTGCAGTTCTCTTCAGTG 640 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 ------------------------------------------------------------ consensus_13186#0 GGGTTGAATGGTGATGGGTATAATTACTTGATCCTTGATCACCTTGAGCCTCCAGCAATG 700 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 ------------------------------------------------------------ consensus_13186#0 GAGTATCCTAATGTTGACATTGGTAATGTTGATGATGCTGCTGCTGCTGATGATGATCCG 760 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 ------------------------------------------------------------ consensus_13186#0 GGTGACCTTGATGAGGAGATTGATGATAGCATGCAAAGAAACCATGGTGGCTAGAATTAA 820 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 ------------------------------------------------------------ consensus_13186#0 CCAGTAGCATCATGAGTGAATGGTTTAATTTGCTGGAGATTTGAGTTAAATATCAGATAA 880 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 ------------------------------------------------------------ consensus_13186#0 TAAAATAATAATACAAAGAATAAAAAGAAAACAAACCTGTATAGTTAGCAGGTTTTGATT 940 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 ------------------------------------------------------------ consensus_13186#0 CCTTTCGTTGAACTTTGTGTGCTTGTTAGCTAGCCTATATACCAAACATGCCTTGGCGAG 1000 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 ------------------------------------------------------------ consensus_13186#0 GCTTTCTATTTGTATATAGCTTTTTTTCTTTTTTCTATTGTAAGGTTCGAACTCTATTGA 1060 consensus_13186#2 ------------------------------------------------------------ consensus_13186#1 ------------------------------------------------------------ consensus_13186#0 GTTGATTGAATAAACATTATGCAATTTATGTAAAAAA 1097 consensus_13186#2 ------------------------------------- consensus_13186#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||