cluster # 13187

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Oryza sativa
cluster # 13187 cluster # 13187 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13187#0 length = 1741 sequences # 11

consensus_13187#1 length = 115 sequences # 1

consensusID : consensus_13187#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1741
fasta sequence

                              [AACGGGTAGAGAGAAAAGAGGAGGAGGAGCCCCAATCCGGGACGCCATTGACGCCCTCCCAGGAAGGTCAGAGTAGAGGGAGGCGAGGAACACATGACCTCC-TCCTCTCCTCT-CTTCGTGGAAGAGTAGTAGTGGTAGTTGGTGTTGCGTAGAAGAGAGCACGGAAGCGATACGCGGCGGGGAAGAGAGCAGAGCAGCCGGGTGGCCCGTTCTTGCCGCCGCGGCGCCGTCGTCGCTGCCTTTCTCGCCTCGGGAGATCGCGGATTAGAGGAGGAGTTGGGGGAAGAGGAGGGTTTGGGGGCAATGGATACTACCACGA-GGGCCAAGAT-CCCGTCCCTTCACCACCAGACGGAGATCAACTGGGACAACCTCGACAAGACCAAGCTCTATGTGGTGGGAGCCGGGATGTTCAGTGGCGTGACCGTGGCGCTGTACCCGGTATCGGTGATAAAGACCCGGATGCAGGTAGCCACTGGGGAAGCCGTGAGGAGGAATGCCGCGGCAACATTCAGGAACATTCTCAAGGTGGACGGAGTGCCCGGGCTGTACCGAGGGTTTGGGACAGTTATCACAGGGGCCATCCCTGCTAGGATTATCTTTCTTACAGCGCTTGAGACAACAAAGGCGGCCTCGCTTAAGCTTGTTGAACCATTTAAGCTGTCGGAGCCGGTACAAGCAGCCTTTGCCAATGGCCTTGGCGGTTTGTCGGCATCTCTATGTTCGCAGGCTGTGTTTGTGCCCATTGATGTGGTTAGCCAGAAATTGATGGTTCAAGGATATTCTGGTCATGTTAGATATAAGGGTGGACTTGATGTTGCCCAACAGATTATAAAGGCTGATGGAATTCGGGGGCTGTACAGAGGATTTGGCCTGTCTGTTATGACGTACTCACCATCTAGTGCTGTGTGGTGGGCAAGCTATGGGTCCAGCCAGCGCATAATTTGGAGTGCTTTTGATCGTTGGAATGATAAAGAAAGTTCTCCTAGTCAGTTGACAATAGTTGGTGTCCAAGCCACAGGGGGGATTATTGCTGGTGCAGTGACATCCTGTGTTACAACTCCCATAGATACTATCAAAACCAGACTGCAGGTTAATCAAAACAAACCAAAAGCCATGGAAGTAGTTAGAAGATTGATTGCTGAAGATGGATGGAAAGGTTTCTACAGAGGTTTAGGTCCAAGATTTTTCAGCTCATCAGCTTGGGGTACCTCAATGATAGTATGCTATGAATACCTAAAGCGCTTGTGTG-CTAAAGTTGAAGAGGTCTGAGTC-AGCTTA-AACCTATCACTCTGATGCT-CGCAGTGGTGGA-AATTTTGTA-GCAAAAATCCAATAATGCTGTATGCCAACA-ACTGTGACCCAT---GAGGAAGCTCTCTTTCTTGCTGACTTGATACTAGATATCTTTAAAATTTTAGTGCTCTTGAGGCTATTTTGAAAATGCAGAGGTTCATATTGTTTGCCTCTAACGATGAATATGGATTAGGCAGAATGTTTTACATGATATATAAACGAAAGATTAGATATGTTCACTTTTCATTCTTTTTAGCTCCAGCCTCCA-GGGCTTGTAATAGTGAGACCGGAGTATTGGAACCGGTTTCA-GTGAGGAGGAG-CAAGGATATATATACATTTGCTCGTTTCTCTTCGATGTACTCAAAATATCATTCTTCGAATTTTTTTACGATGGTGCTGGTCTTCGTTTTGTATCCATAATCCTTCGTAGCGAAATTATTTTCCAAAAAAAAAA]

[+] EMBL AK101584             [AACGGGTAGAGAGAAAAGAGGAGGAGGAGCCCCAATCCGGGACGCCATTGACGCCCTCCCAGGAAGGTCAGAGTAGAGGGAGGCGAGGAACACATGACCTCC TCCTCTCCTCT CTTCGTGGAAGAGTAGTAGTGGTAGTTGGTGTTGCGTAGAAGAGAGCACGGAAGCGATACGCGGCGGGGAAGAGAGCAGAGCAGCCGGGTGGCCCGTTCTTGCCGCCGCGGCGCCGTCGTCGCTGCCTTTCTCGCCTCGGGAGATCGCGGATTAGAGGAGGAGTTGGGGGAAGAGGAGGGTTTGGGGGCAATGGATACTACCACGA GGGCCAAGAT CCCGTCCCTTCACCACCAGACGGAGATCAACTGGGACAACCTCGACAAGACCAAGCTCTATGTGGTGGGAGCCGGGATGTTCAGTGGCGTGACCGTGGCGCTGTACCCGGTATCGGTGATAAAGACCCGGATGCAGGTAGCCACTGGGGAAGCCGTGAGGAGGAATGCCGCGGCAACATTCAGGAACATTCTCAAGGTGGACGGAGTGCCCGGGCTGTACCGAGGGTTTGGGACAGTTATCACAGGGGCCATCCCTGCTAGGATTATCTTTCTTACAGCGCTTGAGACAACAAAGGCGGCCTCGCTTAAGCTTGTTGAACCATTTAAGCTGTCGGAGCCGGTACAAGCAGCCTTTGCCAATGGCCTTGGCGGTTTGTCGGCATCTCTATGTTCGCAGGCTGTGTTTGTGCCCATTGATGTGGTTAGCCAGAAATTGATGGTTCAAGGATATTCTGGTCATGTTAGATATAAGGGTGGACTTGATGTTGCCCAACAGATTATAAAGGCTGATGGAATTCGGGGGCTGTACAGAGGATTTGGCCTGTCTGTTATGACGTACTCACCATCTAGTGCTGTGTGGTGGGCAAGCTATGGGTCCAGCCAGCGCATAATTTGGAGTGCTTTTGATCGTTGGAATGATAAAGAAAGTTCTCCTAGTCAGTTGACAATAGTTGGTGTCCAAGCCACAGGGGGGATTATTGCTGGTGCAGTGACATCCTGTGTTACAACTCCCATAGATACTATCAAAACCAGACTGCAGGTTAATCAAAACAAACCAAAAGCCATGGAAGTAGTTAGAAGATTGATTGCTGAAGATGGATGGAAAGGTTTCTACAGAGGTTTAGGTCCAAGATTTTTCAGCTCATCAGCTTGGGGTACCTCAATGATAGTATGCTATGAATACCTAAAGCGCTTGTGTG CTAAAGTTGAAGAGGTCTGAGTC AGCTTA AACCTATCACTCTGATGCT CGCAGTGGTGGA AATTTTGTA GCAAAAATCCAATAATGCTGTATGCCAACA ACTGTGACCCAT   GAGGAAGCTCTCTTTCTTGCTGACTTGATACTAGATATCTTTAAAATTTTAGTGCTCTTGAGGCTATTTTGAAAATGCAGAGGTTCATATTGTTTGCCTCTAACGATGAATATGGATTAGGCAGAATGTTTTACATGATATATAAACGAAAGATTAGATATGTTCACTTTTCATTCTTTTTAGCTCCAGCCTCCA GGGCTTGTAATAGTGAGACCGGAGTATTGGAACCGGTTTCA GTGAGGAGGAG CAAGGATATATATACATTTGCTCGTTTCTCTTCGATGTACTCAAAATATCATTCTTCGAATTTTTTTACGATGGTGCTGGTCTTC                                                 ]
[+] EMBL AU096079             [   GGGTAGAGAGAAAAGAGGAGGAGGAGCCNCAATCNGGGACGCGATTGACGCCCTCCCAGGAAGGTNAGAGTAGNGGGAGGNGAGGAAGACATGACCTCCNTNCTCTCNTCTCCTTCGTGGAAGAGTAGTAGTGGTAGTTGGTGTTGCGTAGAAGAGAGCACGGAAGCGATACGCGGCGGGGAAGAGAGNAGAGNAGCCGGGTGGCCCGTTCTTGCCGCCGNGGCGCCGTCGTCGCTGCATTTCTCG CTCGGGAGATCGCGGATTAGANGAGGAGTTGGGGGAAGAGGAGNGTTTGGGGGCAATGGATACNACCACGAGGGGCCAAGATCCCCGTCCCTTCACCc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB631637             [                                                         CCCAGGAAGGTCAGACTATAGGGAGGCGAGGAACACATGACCTCC TCCTCTCCTCT CTTCGTGGAAGAGTAGTAGTGGTAGTTGGTGTTGCGTAGAAGAGAGCACGGAAGCGATACGCGGCGGGGAAGAGAGCAGAGCAGCCGGGTGGCCCGTTCTTGCCGCCGCGGCGCCGTCGTCGCTGCCTTTCTCGCCTCGGGAGATCGCGGATTAGAGGAGGAGTTGGGGGAAGAGGAGGGTTTGGGGGCAATGGATACTACCACGA GGGCCAAGAT CCCGTCCCTTCACCACCAGACGGAGATCGACTGGGACAACCTCGACAAGACCAAGCTCTATGTGGTGGGAGCCGGGATGTTCAGTGGCGTGACCGTGGCGCTGTACCCGGTATCGGTGATAAAGACCCGGATGCAGGTAGCCACTGGGGAAGCCGTGAGGAGGAATGCCGCGGTAACATTCACGAACATTCTCAAGGTGGACGGAGTGCCCGGGCTGTACCGAGGGTTTGGGACAGTTATCACAGGGGCCATCCCTGCTAGGATTATCTTTCTTACAGCGCTTGAGACAACAAAGGCGGCCTCGCTTAAGCTTGTTGAACCATTTAAGCTGTCGGAGCCGGTACAAGCAGCCTTTGCCAATGGCCTTGGCGGTTTGTCGGCATCTCTATGTTCGCAGGCTGTGTTTGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB648741             [                                                                                                                                                    GCGTAGAAGAGAGCACGGAAGCGATACGCGGCGGGGAAGAGAGCAGAGCAGCCCGGTGGCCCGTTCTTGCCGCCGCGGCGCCGTCGTCGCTGCCTTTCTCGCCTCGGGAGATCGCGGATTAGAGGAGGAGTTGGGGGAAGAGGAGGGTTTGGGGGCAATGGATACTACCACGA GGGCCAAGAT CCCGTCCCTTCACCACCAGACGGAGATCAACTGGGACAACCTCGACAAGACCAAGCTCTATGTGGTGGGAGCCGGGATGTTCAGTGGCGTGACCGTGGCGCTGTACCCGGTATCGGTGATAAAGACCCGGATGCAGGTAGCCACTGGGGAAGCCGTGAGGAGGAATGCCGCGGCAACATTCAGGAACATTCTCAAGGTGGACGGAGTGCCCGGGCTGTACCGAGGGTTTGGGACAGTTATCACAGGGGCCATCCCTGCTAGGATTATCTTTCTTACAGCGCTTGAGACAACAAAGGCGGCCTCGCTTAAGCTTGTTGAACCATTTAAGCTGTCGGAGCCGGTACAAGCAGCCTTTGCCAATGGCCTTGGCGGTTTGTCGGCATCTCTATGTTCGCAGGCTGTGTTTGTGCCCATTGATGTGGTTAGCCAGAAATTGATGGTTTCAGGATATTCTGGTCATGTTACATATAAGGGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF303621             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CCGGATGCAGGTAGCCACTGGGGAAGCCGTGAGGAGGAATGCCGCGGCAACATTCAGGAACATTCTCAAGGTGGACGGAGTGCCCGGGCTGTACCGAGGGTTTGGGACAGTTATCACAGGGGCCATCCCTGCTAGGATTATCTTTCTTACAGCGCTTGAGACAACAAAGGCGGCCTCGCTTAAGCTTGTTGAACCATTTAAGCTGTCGGAGCCGGTACAAGCAGCCTTTGCCAATGGCCTTGGCGGTTTGTCGGCATCTCTATGTTCGCAGGCTGTGTTTGTGCCCATTGATGTGGTTAGCCAGAAATTGATGGTTCAAGGATATTCTGGTCATGTTAGATATAAGGGTGGACTTGATGTTGCCCAACAGATTATAAAGGCTGATGGAATTCGGGGGCTGTACAGAGGATTTGGCCTGTCTGTTATGACGTACTCACCATCTAGTGCTGTGTGGTGGGCAAGCTATGGGTCCAGCCAGCGCATAATTTGGAGTGCTTTTGATCGTTGGAATGATAAAGAAAGTTCTCCTAGTCAGTTGACAATAGTTGGTGTCCAAGCCACACGGGGGATTATTGCTGGTGCAGTGACATCCTGTGTTACAACTCCCATAGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB660510             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GAGGAGGAATGCCGCGGCAACATTCAGGAACATTCTCAAGGTGGACGGAGTGCCCGGGCTGTACCGAGGGTTTGGGACAGTTATCACAGGGGCCATCCCTGCTAGGATTATCTTTCTTACAGCGCTTGAGACAACAAAGGCGGCCTCGCTTAAGCTTGTTGAACCATTTAAGCTGTCGGAGCCGGTACAAGCAGCCTTTGCCAATGGCCTTGGCGGTTTGTCGGCATCTCTATGTTCGCAGGCTGTGTTTGTGCCCATTGATGTGGTTAGCCAGAAATTGATGGTTCAAGGATATTCTGGTCATGTTAGATATAAGGGTGGACTTGATGTTGCCCAACAGATTATAAAGGCTGATGGAATTCGGGGGCTGTACAGAGGATTTGGCCTGTCTGTTATGACGTACTCACCATCTAGTGCTGTGTGGTGGGCAAGCTATGGGTCCAGCCAGCGCATAATTTGGAGTGCTTTTGATCGTTGGAATGATAAAGAAAGTTCTCCTAGTCAGTTGACAATAGTTGGTGTCCAAGCCACAGGGGGGATTATTGCTGGTGCAGTGACATCCTGTGTTACAACTCCCATAGATACTATCAAAACCAGACTGCAGGTTAATCAAAACAAACCAAAAGCCATGGAAGTAGTTAGAAGATTGATTGCTGAAGATGGATGGAAAGGTTTCTACAGAGGTTTAGGTCCAAGATTTTTCAGCTCATCAGCTTGGGGTACCTCAATGATAGTATGCTATGAATACCTAAAGCGCTTGTGTG CTAAAGTTGAAGAGGTCTGAGTC AGCTTA AACCTATCACTCTGATGCT CGCAGTGGTGGA AATTTTGTA GCAAAAATCCAATAATGCTGTATGCCAACA ACTGTGACCCAT   GAGG                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CA765393             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GACAGTTATCACAGGGGCCATCCCTGCTAGGATTATCTTTCTTACAGCGCTTGAGACAACAAAGGCGGCCTCGCTTAAGCTTGTTGAACCATTTAAGCTGTCGGAGCCGGTACAAGCAGCCTTTGCCAATGGCCTTGGCGGTTTGTCGGCATCTCTATGTTCGCAGGCTGTGTTTGTGCCCATTGATGTGGTTAGCCAGAAATTGATGGTTCAAGGATATTCTGGTCATGTTAGATATAAGGGTGGACTTGATGTTGCCCAACAGATTATAAAGGCTGATGGAATTCGGGGGCTGTACAGAGGATTTGGCCTGTCTGTTATGACGTACTCACCATCTAGTGCTGTGTGGTGGGCAAGCTATGGGTCCAGCCAGCGCATAATTTGGAGTGCTTTTGATCATTGGAATGATAAAGAAAGTTCTCCTAGTCAGTTGACAATAGTTGGTGTCCAAGCCACAGGGGGGATTATTGCTGGTGCAGTGACATCCTGTGTTACAACTCCCATAGATACTATCAAAACCAGACTGCAGGTTAATCAAAACAAACCAAAAGCCATGGAAGTAGTTAGAAGATTGATTGCTGAAGATGGATGGAAAGGTTTCTACAGAGGNTTAGGTCCAAGATTTTTCAGCTCATCAGCTTGGGGTACCTCAATGATAGTATGCTATGAATACCTAAAGCGCTTGTGTG CTAAAGNTGAAGAGGTCTGAGTC AGCTTA AACATATCACTCTGATGCT CGCAGTGGNGGAGNATTTTGTA GCAAAAATCCAATAATGCTGTATGNCAACA ACTGGGANCCATGAGGAGGAAGCTCTCTTTCTTGCTGACTTGATACTANATATCTTTAAAATTTaggg                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB660511             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ATTCTGGTCATGTTAGATATAAGGGTGGACTTGATGTTGCCCAACAGATTATAAAGGCTGATGGAATTCGGGGGCTGTACAGAGGATTTGGCCTGTCTGTTATGACGTACTCACCATCTAGTGCTGTGTGGTGGGCAAGCTATGGGTCCAGCCAGCGCATAATTTGGAGTGCTTTTGATCGTTGGAATGATAAAGAAAGTTCTCCTAGTCAGTTGACAATAGTTGGTGTCCAAGCCACAGGGGGGATTATTGCTGGTGCAGTGACATCCTGTGTTACAACTCCCATAGATACTATCAAAACCAGACTGCAGGTTAATCAAAACAAACCAAAAGCCATGGAAGTAGTTAGAAGATTGATTGCTGAAGATGGATGGAAAGGTTTCTACAGAGGTTTAGGTCCAAGATTTTTCAGCTCATCAGCTTGGGGTACCTCAATGATAGTATGCTATGAATACCTAAAGCGCTTGTGTG CTAAAGTTGAAGAGGTCTGAGTC AGCTTA AACCTATCACTCTGATGCT CGCAGTGGTGGA AATTTTGTA GCAAAAATCCAATAATGCTGTATGCCAACA ACTGTGACCCAT   GAGGAAGCTCTCTTTCTTGCTGACTTGATACTAGATATCTTTAAAATTTTAGTGCTCTTGAGGCTATTTTGAAAATGCAGAGGTTCATATTGTTTGCCTCTAACGATGAATATGGATTAGGCAGAATGTTTTACATGATATATAAACGAAAGATTAGATATGTTCACTTTTCATTCTTTTTAGCTCCAGCCTCCA GGGCTTGTAATAGTGAGACCGGAGTATTGGAACCGGTTTCA GTGAGGAGGAG CAAGGATATATATACATTTGCTCGTTTCTCTTC                                                                                                     ]
[-] EMBL CB648742             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCCAACAGATTATAAAGGCTGATGGAATTCGGGGGCTGTACAGAGGATTTGGCCTGTCTGTTATGACGTACTCACCATCTAGTGCTGTGTGGTGGGCAAGCTATGGGTCCAGCCAGCGCATAATTTGGAGTGCTTTTGATCGTTGGAATGATAAAGAAAGTTCTCCTAGTCAGTTGACAATAGTTGGTGTCCAAGCCACAGGGGGGATTATTGCTGGTGCAGTGACATCCTGTGTTACAACTCCCATAGATACTATCAAAACCAGACTGCAGGTTAATCAAAACAAACCAAAAGCCATGGAAGTAGTTAGAAGATTGATTGCTGAAGATGGATGGAAAGGTTTCTACAGAGGTTTAGGTCCAAGATTTTTCAGCTCATCAGCTTGGGGTACCTCAATGATAGTATGCTATGAATACCTAAAGCGCTTGTGTG CTAAAGTTGAAGAGGTTTGAGTC AGCTTA AACCTATCACTCTGATGCT CGCAGTGGTGGA AATTTTGTA GCAAAAATCCAATAATGCTGTATGCCAACA ACTGTGACCCAT   GAGGAAGCTCTCTTTCTTGCTGACTTGATACTAGATATCTTTAAAATTTTAGTGCTCTTGAGGCTATTTTGAAAATGCAGAGGTTCATATTGTTTGCCTCTAACGATGAATATGGATTAGGCAGAATGTTTTACATGATATATAAACGAAAGATTAGATATGTTCACTTTTCATTCTTTTTAGCTCCAGCCTCCA GGGCTTGTAATAGTGAGACCGGAGTATTGGAACCGGTTTCA GTAAGGAGGAG CAAGGATATATATACATTTGCTCGTTcataaaaga                                                                                                   ]
[-] EMBL CB631638             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGCCTGTCTGTTATGACGTACTCACCATCTAGTGCTGTGTGGTGGGCAAGCTATGGGTCCAGCCAGCGCATAATTTGGAGTGCTTTTGATCATTGGAATGATAAAGAAAGTTCTCCTAGTCAGTTGACAATAGTTGGTGTCCAAGCCACAGGGGGGATTATTGCTGGTGCAGTGACATCCTGTGTTACAACTCCCATAGATACTATCAAAACCAGACTGCAGGTTAATCAAAACAAACCAAAAGCCATGGAAGTAGTTAGAAGATTGATTGCTGAAGATGGATGGAAAGGTTTCTACAGAGGTTTAGGTCCAAGATTTTTCAGCTCATCAGCTTGGGGTACCTCAATGATAGTATGCTATGAATACCTAAAGCGCTTGTGTG CTAAAGTTGAAGAGGTCTGAGTC AGCTTA AACATATCACTCTGATGCT CGCAGTGGTGGA AATTTTGTA GCAAAAATCCAATAATGCTGTATGCCAACA ACTGTGACCCATGAGGAGGAAGCTCTCTTTCTTGCTGACTTGATACTAGATATCTTTAAAATTTTAGTGCTCTTGAGGCTATTTTGAAAATGCAGAGGTTCATATTGTTTGCCTCTAACGATGAATATGGATTAGGCAGAATGTTTTACATGATATATAAAAGAAAGATTAGATATGTTCACTTTTCATTCTTTTTAGCTCCAGCCTCCA GGGCTTGTAATAGTGAGACCGGAGTATTGGAACCGGTTTCA GTGAGGAGGAG CAAGGATATATATACATTTGCTCGTTTCTCTTCGATGTACTCAAAATATCATTCTTCGAATTTTTT                                                                    ]
[+] EMBL BI806147             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GATAGTATGCTATGAATACCTTAAGCGCTTGTGTGTCTAAA TTGAAGAGGTCTGAGTCNAGCTTANAACCTATCNCTCTGATGCTCCCCAATGGTGGA AATTTTGTACCCTAAAATCCCATAATGCTGTATGCCCACACACTGTGACCCCT   GAGGAAGCTCTCTTTCTTGCTGACTTGATACTAGATATCTTTAAAATTTTAGTGCTCTTGAGGCTATTTTGAAAATGCCGAGGTTCATATTGTTTGCCTCTAACGATGAATATGGATTAGGCAGAATGTTTTACATGATATATAAACGAAAGATTAGATATGTTCACTTTTCATTCTTTTTAGCTCCAGCCTCCACGGGCTTGTAATAGTGAGACCGGAGTATTGGAACCGGTTTCANGTGAGGAGGAGCCCAGGATATATATACCTTTGCTCGTTTCTCTTCGATGTACTCCAAATATCCTTCTTCGAATTTTTTTACGATGGTGCTGGTCTTCGTTTTGTATCCATAATCCTTCGTAGCGAAATTATTTTCCAAAAAAAAAA]




>consensus_13187#0
AACGGGTAGAGAGAAAAGAGGAGGAGGAGCCCCAATCCGGGACGCCATTGACGCCCTCCC
AGGAAGGTCAGAGTAGAGGGAGGCGAGGAACACATGACCTCCTCCTCTCCTCTCTTCGTG
GAAGAGTAGTAGTGGTAGTTGGTGTTGCGTAGAAGAGAGCACGGAAGCGATACGCGGCGG
GGAAGAGAGCAGAGCAGCCGGGTGGCCCGTTCTTGCCGCCGCGGCGCCGTCGTCGCTGCC
TTTCTCGCCTCGGGAGATCGCGGATTAGAGGAGGAGTTGGGGGAAGAGGAGGGTTTGGGG
GCAATGGATACTACCACGAGGGCCAAGATCCCGTCCCTTCACCACCAGACGGAGATCAAC
TGGGACAACCTCGACAAGACCAAGCTCTATGTGGTGGGAGCCGGGATGTTCAGTGGCGTG
ACCGTGGCGCTGTACCCGGTATCGGTGATAAAGACCCGGATGCAGGTAGCCACTGGGGAA
GCCGTGAGGAGGAATGCCGCGGCAACATTCAGGAACATTCTCAAGGTGGACGGAGTGCCC
GGGCTGTACCGAGGGTTTGGGACAGTTATCACAGGGGCCATCCCTGCTAGGATTATCTTT
CTTACAGCGCTTGAGACAACAAAGGCGGCCTCGCTTAAGCTTGTTGAACCATTTAAGCTG
TCGGAGCCGGTACAAGCAGCCTTTGCCAATGGCCTTGGCGGTTTGTCGGCATCTCTATGT
TCGCAGGCTGTGTTTGTGCCCATTGATGTGGTTAGCCAGAAATTGATGGTTCAAGGATAT
TCTGGTCATGTTAGATATAAGGGTGGACTTGATGTTGCCCAACAGATTATAAAGGCTGAT
GGAATTCGGGGGCTGTACAGAGGATTTGGCCTGTCTGTTATGACGTACTCACCATCTAGT
GCTGTGTGGTGGGCAAGCTATGGGTCCAGCCAGCGCATAATTTGGAGTGCTTTTGATCGT
TGGAATGATAAAGAAAGTTCTCCTAGTCAGTTGACAATAGTTGGTGTCCAAGCCACAGGG
GGGATTATTGCTGGTGCAGTGACATCCTGTGTTACAACTCCCATAGATACTATCAAAACC
AGACTGCAGGTTAATCAAAACAAACCAAAAGCCATGGAAGTAGTTAGAAGATTGATTGCT
GAAGATGGATGGAAAGGTTTCTACAGAGGTTTAGGTCCAAGATTTTTCAGCTCATCAGCT
TGGGGTACCTCAATGATAGTATGCTATGAATACCTAAAGCGCTTGTGTGCTAAAGTTGAA
GAGGTCTGAGTCAGCTTAAACCTATCACTCTGATGCTCGCAGTGGTGGAAATTTTGTAGC
AAAAATCCAATAATGCTGTATGCCAACAACTGTGACCCATGAGGAAGCTCTCTTTCTTGC
TGACTTGATACTAGATATCTTTAAAATTTTAGTGCTCTTGAGGCTATTTTGAAAATGCAG
AGGTTCATATTGTTTGCCTCTAACGATGAATATGGATTAGGCAGAATGTTTTACATGATA
TATAAACGAAAGATTAGATATGTTCACTTTTCATTCTTTTTAGCTCCAGCCTCCAGGGCT
TGTAATAGTGAGACCGGAGTATTGGAACCGGTTTCAGTGAGGAGGAGCAAGGATATATAT
ACATTTGCTCGTTTCTCTTCGATGTACTCAAAATATCATTCTTCGAATTTTTTTACGATG
GTGCTGGTCTTCGTTTTGTATCCATAATCCTTCGTAGCGAAATTATTTTCCAAAAAAAAA
A

consensusID : consensus_13187#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 115
fasta sequence

                              [GTTTCAGTGAGGAGGAGCAAGGATATATATACATTTGCTCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTACCGTAT]

[+] EMBL CF327469             [GTTTCAGTGAGGAGGAGCAAGGATATATATACATTTGCTCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTACCGTAT]




>consensus_13187#1
GTTTCAGTGAGGAGGAGCAAGGATATATATACATTTGCTCGTTTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCGTTACGTACCGTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13187#0      AACGGGTAGAGAGAAAAGAGGAGGAGGAGCCCCAATCCGGGACGCCATTGACGCCCTCCC 60
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      AGGAAGGTCAGAGTAGAGGGAGGCGAGGAACACATGACCTCCTCCTCTCCTCTCTTCGTG 120
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      GAAGAGTAGTAGTGGTAGTTGGTGTTGCGTAGAAGAGAGCACGGAAGCGATACGCGGCGG 180
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      GGAAGAGAGCAGAGCAGCCGGGTGGCCCGTTCTTGCCGCCGCGGCGCCGTCGTCGCTGCC 240
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      TTTCTCGCCTCGGGAGATCGCGGATTAGAGGAGGAGTTGGGGGAAGAGGAGGGTTTGGGG 300
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      GCAATGGATACTACCACGAGGGCCAAGATCCCGTCCCTTCACCACCAGACGGAGATCAAC 360
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      TGGGACAACCTCGACAAGACCAAGCTCTATGTGGTGGGAGCCGGGATGTTCAGTGGCGTG 420
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      ACCGTGGCGCTGTACCCGGTATCGGTGATAAAGACCCGGATGCAGGTAGCCACTGGGGAA 480
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      GCCGTGAGGAGGAATGCCGCGGCAACATTCAGGAACATTCTCAAGGTGGACGGAGTGCCC 540
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      GGGCTGTACCGAGGGTTTGGGACAGTTATCACAGGGGCCATCCCTGCTAGGATTATCTTT 600
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      CTTACAGCGCTTGAGACAACAAAGGCGGCCTCGCTTAAGCTTGTTGAACCATTTAAGCTG 660
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      TCGGAGCCGGTACAAGCAGCCTTTGCCAATGGCCTTGGCGGTTTGTCGGCATCTCTATGT 720
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      TCGCAGGCTGTGTTTGTGCCCATTGATGTGGTTAGCCAGAAATTGATGGTTCAAGGATAT 780
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      TCTGGTCATGTTAGATATAAGGGTGGACTTGATGTTGCCCAACAGATTATAAAGGCTGAT 840
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      GGAATTCGGGGGCTGTACAGAGGATTTGGCCTGTCTGTTATGACGTACTCACCATCTAGT 900
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      GCTGTGTGGTGGGCAAGCTATGGGTCCAGCCAGCGCATAATTTGGAGTGCTTTTGATCGT 960
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      TGGAATGATAAAGAAAGTTCTCCTAGTCAGTTGACAATAGTTGGTGTCCAAGCCACAGGG 1020
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      GGGATTATTGCTGGTGCAGTGACATCCTGTGTTACAACTCCCATAGATACTATCAAAACC 1080
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      AGACTGCAGGTTAATCAAAACAAACCAAAAGCCATGGAAGTAGTTAGAAGATTGATTGCT 1140
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      GAAGATGGATGGAAAGGTTTCTACAGAGGTTTAGGTCCAAGATTTTTCAGCTCATCAGCT 1200
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      TGGGGTACCTCAATGATAGTATGCTATGAATACCTAAAGCGCTTGTGTGCTAAAGTTGAA 1260
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      GAGGTCTGAGTCAGCTTAAACCTATCACTCTGATGCTCGCAGTGGTGGAAATTTTGTAGC 1320
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      AAAAATCCAATAATGCTGTATGCCAACAACTGTGACCCATGAGGAAGCTCTCTTTCTTGC 1380
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      TGACTTGATACTAGATATCTTTAAAATTTTAGTGCTCTTGAGGCTATTTTGAAAATGCAG 1440
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      AGGTTCATATTGTTTGCCTCTAACGATGAATATGGATTAGGCAGAATGTTTTACATGATA 1500
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      TATAAACGAAAGATTAGATATGTTCACTTTTCATTCTTTTTAGCTCCAGCCTCCAGGGCT 1560
consensus_13187#1      ------------------------------------------------------------
                                                                                   

consensus_13187#0      TGTAATAGTGAGACCGGAGTATTGGAACCGGTTTCAGTGAGGAGGAGCAAGGATATATAT 1620
consensus_13187#1      ------------------------------GTTTCAGTGAGGAGGAGCAAGGATATATAT 30
                                                     ******************************

consensus_13187#0      ACATTTGCTCGTTTCTCTTCGATGTACTCAAAATATCATTCTTCGAATTTTTTTACGATG 1680
consensus_13187#1      ACATTTGCTCGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--AAAAAA 88
                       ***************      *   *   **** *  *       **       *  *  

consensus_13187#0      GTGCTGGTCT-TCGTTTTGTATCCATAATCCTTCGTAGCGAAATTATTTTCCAAAAAAAA 1739
consensus_13187#1      ACCCTGTCATGCCGTTACGTA-CCGTAT-------------------------------- 115
                          ***   *  ****  *** ** **                                 

consensus_13187#0      AA 1741
consensus_13187#1      --