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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 3045 fasta sequence
[TGCCACGTCACCACGCGCGTGCGTCCATGGCCACCGCTTCGTCAGCCGGTCGTGCACGACGACGAGATGAGAGGAGATGAGACGAGTTCCCTCCTCTTCATCCATCCATGGCCGCCTAGCTTAGAGGCTCACCATCGTCACACTGGCTCACTGCTGCATTCCGCATTCCTCGCTCGCTCACCTCACCTCACCTCACTCACCTACATCGCCGGATCGATCGCACCGTCGCCGGCGGCCAACGAGATGCTTCGCGCCGCCGCCCGCGCGCTCACCGTCAGCTCCCTCAACCCAAAGGTGCTCGCGCTGGCGGATCACCACCTCGGCGGACTCGTCGCCCGCCGCGCGCAGAGCATGCAACAAGAGCTAGACGCTAATCCAGCTTCACATCCTTTCAGTGAGATCATCTATTGCAACCACAGCAACCCACAGTCCCAAGGGCAGCAACCAAACAAGTTCTTCCGGGAGGTTCTTGCATTGTGTAATCATCCCCATCTCCTAGACCGGAGTGAGGCCAGCTTCATGTTCAGCTCTGATGCGATAACGAGGGCACGGGAGATTGTAGGCTTCATTCCTGGAAAAACAACTGGAGGATACAGTCACT-----GGTATTGAAGGGTTGCGTGATGCAATTGCTGCTGGAATAGCTTCTCGCGATGGTTTACCGTCGTATTCGGAGGACATTTTCCTGACAGATGGAGCAGCTGCACCGGTTCATATGATGATGCACTTGTTGATACGTAGCAAGAAGGACGGCATCCTTTGCCCAATTCCATCACACTCTTTGTACACAGATTCTATGGTTCTTCGTGGCGCAACTCTTGTACCGTATTACCTTGATGAATCCAGAGGTTGGAGTGTGAACATTTCAGATCTGAAGAAACAGTTGGATGGTGCCCGGGCAAAGGGCATTGATGTGAGGGGACTTGTGGTGGTAAATCCGGGAAACCCTACTGGGCAGGTTCTTGTGGAGGAAAACCAGTGTGAAATAGTGGAGCTCTGCAAGAATGAATGCCTTGTTCTCCTAGCAGATGAGGTTTACCAAGAAAACATTTACACGGATCAGAAGAAATTTAACTCCTTCAAGAAGGTAGCACGGTCCATAGGCTATGGGGAAGGGGATATATCTTTAGTATCATTCCACTCAGTATCTAATGGATACTACGGAGAATGCGGGAGAAGAGGGGGTTACATGGAGGTCACTGGCTTCAGCTCGGAAGTAAGGGGAGAAGTATACAAAGTTGCATCCCTAAGCGCATGCTCCAACATATCTGGCCAGATCCTTATGAGCCTAGTCATGAACCCACCAAAGGTTGGAGATGAGTCATACCCCTCTTATCGTGCAGAAAGAGACAGCATACTATCATCTTTGTCTTGCTGTGCAGAGGCCATGGTGTCCACATTCAACAGCATGGAAGGGATGACTTGCAACAAGGCTGAAGGTGGAATATCTGTGTTCCCTAGTGTTCGGCTGCCGCCACGGGCAATTGAAGCTGCTGAGGCGATGAACACAGAGCCGGATGTGTTCTATGCTCTCCGTCTTCTCGAAAGCACTGGGATTGTTGTTGTGCCTGGCTCAGTGTTTGGACAAGTACCTGGAACATGGCATTTCAGATGCACAATTCTGCCACAGGAAGAGAAGACACGGCAGATTATCTCCCGCTTTAATGTGTTCCATGAAGCATTTATGGAAGAATTCCGCAGCTAAAAGGCGCAAACATTCTTTTTCCATATGTAGTATAACTCTATGTACTTTCTATGACTGATAAGTGATAAGTGATAAGTGTGAGATTTCTACCTGAATCTCTCAGCTGTCATGTTCCAATCCTGTACAGATTATCACATAGAGTCCTACCATCATAAAATTCTCTAGGGTCCTACCATCATAAAAAAATCAGGTAAAAAACATCGGTTTCGGTGTGCTGTAAAAACCAAGGTGGACAAAGTTGGCAGGAAGCAAGTTGGAAGTCCTTGTCATGAGTCATGACACTGAATATATAACTAGGTTCTTTTAATCCAATAATGATACAAGAGTTAGAAAGGGAATTTGTCACCAATTATGTGTCAATTTAATAGCCATGCAATTGTACCTTAATCTATGCAGCTTAACCAATGATTTATGTTGCAGGGACTTCATTGACCTAACTTCCCCTCTTTAAAATGATATCCACCACCCACTAATGGCCATTTTCATGACATCCACTCCCATGGTTATTACTTATTAGTATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGT-GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAGAAAAAAAGTGTCGTGTCGAACCAAGCTGCTGGGAGTTCGTTTGCCTGTCAATTTGTTGCTTGATAAGAAATTCTCTGAAAGTTAAAAAAAAAA]
[+] EMBL AK119373 [TGCCACGTCACCACGCGCGTGCGTCCATGGCCACCGCTTCGTCAGCCGGTCGTGCACGACGACGAGATGAGAGGAGATGAGACGAGTTCCCTCCTCTTCATCCATCCATGGCCGCCTAGCTTAGAGGCTCACCATCGTCACACTGGCTCACTGCTGCATTCCGCATTCCTCGCTCGCTCACCTCACCTCACCTCACTCACCTACATCGCCGGATCGATCGCACCGTCGCCGGCGGCCAACGAGATGCTTCGCGCCGCCGCCCGCGCGCTCACCGTCAGCTCCCTCAACCCAAAGGTGCTCGCGCTGGCGGATCACCACCTCGGCGGACTCGTCGCCCGCCGCGCGCAGAGCATGCAACAAGAGCTAGACGCTAATCCAGCTTCACATCCTTTCAGTGAGATCATCTATTGCAACCACAGCAACCCACAGTCCCAAGGGCAGCAACCAAACAAGTTCTTCCGGGAGGTTCTTGCATTGTGTAATCATCCCCATCTCCTAGACCGGAGTGAGGCCAGCTTCATGTTCAGCTCTGATGCGATAACGAGGGCACGGGAGATTGTAGGCTTCATTCCTGGAAAAACAACTGGAGGATACAGTCACT GGTATTGAAGGGTTGCGTGATGCAATTGCTGCTGGAATAGCTTCTCGCGATGGTTTACCGTCGTATTCGGAGGACATTTTCCTGACAGATGGAGCAGCTGCACCGGTTCATATGATGATGCACTTGTTGATACGTAGCAAGAAGGACGGCATCCTTTGCCCAATTCCATCACACTCTTTGTACACAGATTCTATGGTTCTTCGTGGCGCAACTCTTGTACCGTATTACCTTGATGAATCCAGAGGTTGGAGTGTGAACATTTCAGATCTGAAGAAACAGTTGGATGGTGCCCGGGCAAAGGGCATTGATGTGAGGGGACTTGTGGTGGTAAATCCGGGAAACCCTACTGGGCAGGTTCTTGTGGAGGAAAACCAGTGTGAAATAGTGGAGCTCTGCAAGAATGAATGCCTTGTTCTCCTAGCAGATGAGGTTTACCAAGAAAACATTTACACGGATCAGAAGAAATTTAACTCCTTCAAGAAGGTAGCACGGTCCATAGGCTATGGGGAAGGGGATATATCTTTAGTATCATTCCACTCAGTATCTAATGGATACTACGGAGAATGCGGGAGAAGAGGGGGTTACATGGAGGTCACTGGCTTCAGCTCGGAAGTAAGGGGAGAAGTATACAAAGTTGCATCCCTAAGCGCATGCTCCAACATATCTGGCCAGATCCTTATGAGCCTAGTCATGAACCCACCAAAGGTTGGAGATGAGTCATACCCCTCTTATCGTGCAGAAAGAGACAGCATACTATCATCTTTGTCTTGCTGTGCAGAGGCCATGGTGTCCACATTCAACAGCATGGAAGGGATGACTTGCAACAAGGCTGAAGGTGGAATATCTGTGTTCCCTAGTGTTCGGCTGCCGCCACGGGCAATTGAAGCTGCTGAGGCGATGAACACAGAGCCGGATGTGTTCTATGCTCTCCGTCTTCTCGAAAGCACTGGGATTGTTGTTGTGCCTGGCTCAGTGTTTGGACAAGTACCTGGAACATGGCATTTCAGATGCACAATTCTGCCACAGGAAGAGAAGACACGGCAGATTATCTCCCGCTTTAATGTGTTCCATGAAGCATTTATGGAAGAATTCCGCAGCTAAAAGGCGCAAACATTCTTTTTCCATATGTAGTATAACTCTATGTACTTTCTATGACTGATAAGTGATAAGTGATAAGTGTGAGATTTCTACCTGAATCTCTCAGCTGTCATGTTCCAATCCTGTACAGATTATCACATAGAGTCCTACCATCATAAAATTCTCTAGGGTCCTACCATCATAAAAAAATCAGGTAAAAAACATCGGTTTCGGTGTGCTGTAAAAACCAAGGTGGACAAAGTTGGCAGGAAGCAAGTTGGAAGTCCTTGTCATGAGTCATGACACTGAATATATAACTAGGTTCTTTTAATCCAATAATGATACAAGAGTTAGAAAGGGAATTTGTCACCAATTATGTGTCAATTTAATAGCCATGCAATTGTACCTTAATCTATGCAGCTTAACCAATGATTTATGTTGCAGGGACTTCATTGACCTAACTTCCCCTCTTTAAAATGATATCCACCACCCACTAATGGCCATTTTCATGACATCCACTCCCATGGTTATTACTTATTAGTATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGT GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATACATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTC ]
[+] EMBL AK107029 [ CGCCTAGCTTAGAGGCTCACCATCGTCACACTGGCTCACTGCTGCATTCCGCATTCCTCGCTCGCTCACCTCACCTCACCTCACTCACCTACATCGCCGGATCGATCGCACCGTCGCCGGCGGCCAACGAGATGCTTCGCGCCGCCGCCCGCGCGCTCACCGTCAGCTCCCTCAACCCAAAGGTGCTCGCGCTGGCGGATCACCACCTCGGCGGACTCGTCGCCCGCCGCGCGCAGAGCATGCAACAAGAGCTAGACGCTAATCCAGCTTCACATCCTTTCAGTGAGATCATCTATTGCAACCACAGCAACCCACAGTCCCAAGGGCAGCAACCAAACAAGTTCTTCCGGGAGGTTCTTGCATTGTGTAATCATCCCCATCTCCTAGACCGGAGTGAGGCCAGCTTCATGTTCAGCTCTGATGCGATAACGAGGGCACGGGAGATTGTAGGCTTCATTCCTGGAAAAACAACTGGAGGATACAGTCACTGTCAGGGTATTGAAGGGTTGCGTGATGCAATTGCTGCTGGAATAGCTTCTCGCGATGGTTTACCGTCGTATTCGGAGGACATTTTCCTGACAGATGGAGCAGCTGCACCGGTTCATATGATGATGCACTTGTTGATACGTGGCAAGAAGGACGGCATCCTTTGCCCAATTCCATCACACTCTTTGTACACAGATTCTATGGTTCTTCGTGGCGCAACTCTTGTACCGTATTACCTTGATGAATCCAGAGGTTGGAGTGTGAACATTTCAGATCTGAAGAAACAGTTGGATGGTGCCCGGGCAAAGGGCATTGATGTGAGGGGACTTGTGGTGGTAAATCCGGGAAACCCTACTGGGCAGGTTCTTGTGGAGGAAAACCAGTGTGAAATAGTGGAGCTCTGCAAGAATGAATGCCTTGTTCTCCTAGCAGATGAGGTTTACCAGGAAAACATTTACACGGATCAGAAGAAATTTAACTCCTTCAAGAAGGTAGCACGGTCCATAGGCTATGGGGAAGGGGATATATCTTTAGTATCATTCCACTCAGTATCTAATGGATACTACGGAGAATGCGGGAGAAGAGGGGGTTACATGGAGGTCACTGGCTTCAGCTCGGAAGTAAGGGGAGAAGTATACAAAGTTGCATCCCTAAGCGCATGCTCCAACATATCTGGCCAGATCCTTATGAGCCTAGTCATGAACCCACCAAAGGTTGGAGATGAGTCATACCCCTCTTATCGTGCAGAAAGAGACAGCATACTATCATCTTTGTCTTGCTGTGCAGAGGCCATGGTGTCCACATTCAACAGCATGGAAGGGATGACTTGCAACAAGGCTG AGGTGGAATATCTGTGTTCCCTAGTGTTCGGCTGCCGCCACGGGCAATTGAAGCTGCTGAGGCGATGAACACAGAGCCGGATGTGTTCTATGCTCTCCGTCTTCTCGAAAGCACTGGGATTGTTGTTGTGCCTGGCTCAGTGTTTGGACAAGTACCTGGAACATGGCATTTCAGATGCACAATTCTGCCACAGGAAGAGAAGACACGGCAGATTATCTCCCGCTTTAATGTGTTCCATGAAGCATTTATGGAAGAATTCCGCAGCTAAAAGGCGCAAACATTCTTTTTCCATATGTAGTATAACTCTATGTACTTTCTATGACTGATAAGTGATAAGTGATAAGTGTGAGA ]
[+] EMBL CA756565 [ TGCAACAGGCCAT ATCCATGG TTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTAT GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCCGGAATAAGGATTATGCTGTGTTTAGGTACGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAAaaaaaaa ]
[+] EMBL AU162318 [ ACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAANGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGNAAGCCTGTCAGTGTGGGGGGAAGAACTG ]
[-] EMBL CF282236 [ GGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGT GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAAAAAAAAA ]
[-] EMBL CF281842 [ CGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGT GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAGTTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAAaaaaaaaa ]
[+] EMBL AU165215 [ CTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAGAAAAA ]
[+] EMBL AU057407 [ AAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAGATTCCTGGTGTCGTGTCGAACCAAGCTGCTGGGAGTTCGTTTGCCTGTCAATTTGTTGCTTGATAAGAAATTCTCTGAAAGTTAAAAAAAAAA]
consensusID : consensus_13198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 628 fasta sequence
[NTCAGNTCCTAATCCAAGAAGGCTCCNAACTCTNTCACTTCACCAGCAAGNTCAACAANGTCTATGAAGACAAGTGCATGGGCATCCTCTGCTACACCNNCGAGAGCGGCGAGCTGNTCTNCGAGGNCTTCGACGNGGGCCCNAGGCTCNCCTGGCAAGNCATGGAGAAGATCAACAGGGAGAAGGAACTNAAGGCTNAAGAAGNTCGTCGGGAGAGGATGATGCGGATACGGCGTCGCGGGGATCGACTGGAAGCANCTGCGGNCCGCTGTCAGCAAGCCTGTCAGTGTGGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030767 [NTCAGNTCCTAATCCAAGAAGGCTCCNAACTCTNTCACTTCACCAGCAAGNTCAACAANGTCTATGAAGACAAGTGCATGGGCATCCTCTGCTACACCNNCGAGAGCGGCGAGCTGNTCTNCGAGGNCTTCGACGNGGGCCCNAGGCTCNCCTGGCAAGNCATGGAGAAGATCAACAGGGAGAAGGAACTNAAGGCTNAAGAAGNTCGTCGGGAGAGGATGATGCGGATACGGCGTCGCGGGGATCGACTGGAAGCANCTGCGGNCCGCTGTCAGCAAGCCTGTCAGTGTGGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA758225 [ AAGAACTAAACAAGCTGACAAGCTTACTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGAAGAAACAAGTTATGCTTGTTTGTGTGTATATAAAGTATGTAAATCGATCTCCATTGCTGCTGCTTTCTCCGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGACGAGACAAACAGGGGCGTGATGCTGATCTAACTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGA ]
consensusID : consensus_13198#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 626 fasta sequence
[TTCGCCCTTACTGACTGGACTGAAGGAGTAGAAAATTTTTCATGACATCCACTCCCATGGTTATTACTTATTAGTATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGNGAGAAGATCAACAGGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGGTTCGC-GGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGTGGGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGGTTTGTGTGTATATAGAGTATGGTAGATCGATCTCCA]
[+] EMBL CF282235 [TTCGCCCTTACTGACTGGACTGAAGGAGTAGAAAATTTTTCATGACATCCACTCCCATGGTTATTACTTATTAGTATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGNGAGAAGATCAACAGGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGGTTCGC GGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGTGGGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGGTTTGTGTGTATATAGAGTATGGTAGATCGATCTCCA]
[+] EMBL CF281841 [ ACATCCACTCCCATGGTTATTACTTATTAGTATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGGAGAAGATCAACAGGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGNTTCGCGGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGTGGGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13198#0 TGCCACGTCACCACGCGCGTGCGTCCATGGCCACCGCTTCGTCAGCCGGTCGTGCACGAC 60
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GACGAGATGAGAGGAGATGAGACGAGTTCCCTCCTCTTCATCCATCCATGGCCGCCTAGC 120
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 TTAGAGGCTCACCATCGTCACACTGGCTCACTGCTGCATTCCGCATTCCTCGCTCGCTCA 180
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 CCTCACCTCACCTCACTCACCTACATCGCCGGATCGATCGCACCGTCGCCGGCGGCCAAC 240
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GAGATGCTTCGCGCCGCCGCCCGCGCGCTCACCGTCAGCTCCCTCAACCCAAAGGTGCTC 300
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GCGCTGGCGGATCACCACCTCGGCGGACTCGTCGCCCGCCGCGCGCAGAGCATGCAACAA 360
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GAGCTAGACGCTAATCCAGCTTCACATCCTTTCAGTGAGATCATCTATTGCAACCACAGC 420
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 AACCCACAGTCCCAAGGGCAGCAACCAAACAAGTTCTTCCGGGAGGTTCTTGCATTGTGT 480
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 AATCATCCCCATCTCCTAGACCGGAGTGAGGCCAGCTTCATGTTCAGCTCTGATGCGATA 540
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 ACGAGGGCACGGGAGATTGTAGGCTTCATTCCTGGAAAAACAACTGGAGGATACAGTCAC 600
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 TGGTATTGAAGGGTTGCGTGATGCAATTGCTGCTGGAATAGCTTCTCGCGATGGTTTACC 660
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GTCGTATTCGGAGGACATTTTCCTGACAGATGGAGCAGCTGCACCGGTTCATATGATGAT 720
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GCACTTGTTGATACGTAGCAAGAAGGACGGCATCCTTTGCCCAATTCCATCACACTCTTT 780
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GTACACAGATTCTATGGTTCTTCGTGGCGCAACTCTTGTACCGTATTACCTTGATGAATC 840
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 CAGAGGTTGGAGTGTGAACATTTCAGATCTGAAGAAACAGTTGGATGGTGCCCGGGCAAA 900
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GGGCATTGATGTGAGGGGACTTGTGGTGGTAAATCCGGGAAACCCTACTGGGCAGGTTCT 960
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 TGTGGAGGAAAACCAGTGTGAAATAGTGGAGCTCTGCAAGAATGAATGCCTTGTTCTCCT 1020
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 AGCAGATGAGGTTTACCAAGAAAACATTTACACGGATCAGAAGAAATTTAACTCCTTCAA 1080
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GAAGGTAGCACGGTCCATAGGCTATGGGGAAGGGGATATATCTTTAGTATCATTCCACTC 1140
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 AGTATCTAATGGATACTACGGAGAATGCGGGAGAAGAGGGGGTTACATGGAGGTCACTGG 1200
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 CTTCAGCTCGGAAGTAAGGGGAGAAGTATACAAAGTTGCATCCCTAAGCGCATGCTCCAA 1260
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 CATATCTGGCCAGATCCTTATGAGCCTAGTCATGAACCCACCAAAGGTTGGAGATGAGTC 1320
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 ATACCCCTCTTATCGTGCAGAAAGAGACAGCATACTATCATCTTTGTCTTGCTGTGCAGA 1380
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GGCCATGGTGTCCACATTCAACAGCATGGAAGGGATGACTTGCAACAAGGCTGAAGGTGG 1440
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 AATATCTGTGTTCCCTAGTGTTCGGCTGCCGCCACGGGCAATTGAAGCTGCTGAGGCGAT 1500
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GAACACAGAGCCGGATGTGTTCTATGCTCTCCGTCTTCTCGAAAGCACTGGGATTGTTGT 1560
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 TGTGCCTGGCTCAGTGTTTGGACAAGTACCTGGAACATGGCATTTCAGATGCACAATTCT 1620
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GCCACAGGAAGAGAAGACACGGCAGATTATCTCCCGCTTTAATGTGTTCCATGAAGCATT 1680
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 TATGGAAGAATTCCGCAGCTAAAAGGCGCAAACATTCTTTTTCCATATGTAGTATAACTC 1740
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 TATGTACTTTCTATGACTGATAAGTGATAAGTGATAAGTGTGAGATTTCTACCTGAATCT 1800
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 CTCAGCTGTCATGTTCCAATCCTGTACAGATTATCACATAGAGTCCTACCATCATAAAAT 1860
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 TCTCTAGGGTCCTACCATCATAAAAAAATCAGGTAAAAAACATCGGTTTCGGTGTGCTGT 1920
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 AAAAACCAAGGTGGACAAAGTTGGCAGGAAGCAAGTTGGAAGTCCTTGTCATGAGTCATG 1980
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 ACACTGAATATATAACTAGGTTCTTTTAATCCAATAATGATACAAGAGTTAGAAAGGGAA 2040
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 TTTGTCACCAATTATGTGTCAATTTAATAGCCATGCAATTGTACCTTAATCTATGCAGCT 2100
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 TAACCAATGATTTATGTTGCAGGGACTTCATTGACCTAACTTCCCCTCTTTAAAATGATA 2160
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ---------------------------------------------TTCGCCCTTACTGAC 15
consensus_13198#0 TCCACCACCCACTAATGGCCATTTTCATGACATCCACTCCCATGGTTATTACTTATTAGT 2220
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 TGGACTGAAGGAGTAGAAAATTTTTCATGACATCCACTCCCATGGTTATTACTTATTAGT 75
consensus_13198#0 ATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCAC 2280
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCAC 135
consensus_13198#0 ACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGC 2340
consensus_13198#1 ------------------------------------------------------------
consensus_13198#2 ACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGC 195
consensus_13198#0 AGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTC 2400
consensus_13198#1 -----NTCAGNTCCT-AATCCAAGAAGGCTCCNAACTCTNTCA-CTTCACCAGCAAGNTC 53
consensus_13198#2 AGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTC 255
**** **** **************** ****** *** ************* **
consensus_13198#0 AACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAG 2460
consensus_13198#1 AACAANGTCTATGAAGACAAGTGCATGGGCATCCTCTGCTACACCNNCGAGAGCGGCGAG 113
consensus_13198#2 AACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAG 315
***** *************** *********************** *************
consensus_13198#0 CTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGG-AGAAGAT 2519
consensus_13198#1 CTGNTCTNCGAGGNCTTCGACGNGGGCCCNAGGCTCNCCTGGCAAGNCATGG-AGAAGAT 172
consensus_13198#2 CTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGNGAGAAGAT 375
*** *** ***** ******** ****** ****** ********* **** *******
consensus_13198#0 CAACAGGG-AGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGAT-C 2577
consensus_13198#1 CAACAGGG-AGAAGGAACTNAAGGCTNAAGAAGNTCGTCGGGAGAGGATGATGCGGATAC 231
consensus_13198#2 CAACAGGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGAT-C 434
******** ********** ****** ****** ************************ *
consensus_13198#0 GGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGTG 2637
consensus_13198#1 GGCGTCGCGGGGATCGACTGGAAGCANCTGCGGNCCGCTGTCAGCAAGCCTGTCAGTGTG 291
consensus_13198#2 GGGTTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGTG 494
** ****************** ****** **************************
consensus_13198#0 GGGG-AAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGA 2696
consensus_13198#1 GGGG-AAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGA 350
consensus_13198#2 GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGA 554
**** *******************************************************
consensus_13198#0 AATGTTTCAGATCTTGTAGAAACAAGTTATGCTTG-TTTGTGTGTATATAGAGTATG-TA 2754
consensus_13198#1 AATGTTTCAGATCTTGTAGAAACAAGTTATGCTTG-TTTGTGTGTATATAGAGTATG-TA 408
consensus_13198#2 AATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGGTTTGTGTGTATATAGAGTATGGTA 614
*********************************** ********************* **
consensus_13198#0 GATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGA 2814
consensus_13198#1 GATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGA 468
consensus_13198#2 GATCGATCTCCA------------------------------------------------ 626
************
consensus_13198#0 TTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAAT 2874
consensus_13198#1 TTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAAT 528
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 TGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCC 2934
consensus_13198#1 TGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCC 588
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 AACTTCCAAGTTGATCAGAAAAAAAGTGTCGTGTCGAACCAAGCTGCTGGGAGTTCGTTT 2994
consensus_13198#1 AACTTCCAAGTTGATCAAAAAAAAAAAAAAAAAAAAAAAA-------------------- 628
consensus_13198#2 ------------------------------------------------------------
consensus_13198#0 GCCTGTCAATTTGTTGCTTGATAAGAAATTCTCTGAAAGTTAAAAAAAAAA 3045
consensus_13198#1 ---------------------------------------------------
consensus_13198#2 ---------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||