These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 3045 fasta sequence [TGCCACGTCACCACGCGCGTGCGTCCATGGCCACCGCTTCGTCAGCCGGTCGTGCACGACGACGAGATGAGAGGAGATGAGACGAGTTCCCTCCTCTTCATCCATCCATGGCCGCCTAGCTTAGAGGCTCACCATCGTCACACTGGCTCACTGCTGCATTCCGCATTCCTCGCTCGCTCACCTCACCTCACCTCACTCACCTACATCGCCGGATCGATCGCACCGTCGCCGGCGGCCAACGAGATGCTTCGCGCCGCCGCCCGCGCGCTCACCGTCAGCTCCCTCAACCCAAAGGTGCTCGCGCTGGCGGATCACCACCTCGGCGGACTCGTCGCCCGCCGCGCGCAGAGCATGCAACAAGAGCTAGACGCTAATCCAGCTTCACATCCTTTCAGTGAGATCATCTATTGCAACCACAGCAACCCACAGTCCCAAGGGCAGCAACCAAACAAGTTCTTCCGGGAGGTTCTTGCATTGTGTAATCATCCCCATCTCCTAGACCGGAGTGAGGCCAGCTTCATGTTCAGCTCTGATGCGATAACGAGGGCACGGGAGATTGTAGGCTTCATTCCTGGAAAAACAACTGGAGGATACAGTCACT-----GGTATTGAAGGGTTGCGTGATGCAATTGCTGCTGGAATAGCTTCTCGCGATGGTTTACCGTCGTATTCGGAGGACATTTTCCTGACAGATGGAGCAGCTGCACCGGTTCATATGATGATGCACTTGTTGATACGTAGCAAGAAGGACGGCATCCTTTGCCCAATTCCATCACACTCTTTGTACACAGATTCTATGGTTCTTCGTGGCGCAACTCTTGTACCGTATTACCTTGATGAATCCAGAGGTTGGAGTGTGAACATTTCAGATCTGAAGAAACAGTTGGATGGTGCCCGGGCAAAGGGCATTGATGTGAGGGGACTTGTGGTGGTAAATCCGGGAAACCCTACTGGGCAGGTTCTTGTGGAGGAAAACCAGTGTGAAATAGTGGAGCTCTGCAAGAATGAATGCCTTGTTCTCCTAGCAGATGAGGTTTACCAAGAAAACATTTACACGGATCAGAAGAAATTTAACTCCTTCAAGAAGGTAGCACGGTCCATAGGCTATGGGGAAGGGGATATATCTTTAGTATCATTCCACTCAGTATCTAATGGATACTACGGAGAATGCGGGAGAAGAGGGGGTTACATGGAGGTCACTGGCTTCAGCTCGGAAGTAAGGGGAGAAGTATACAAAGTTGCATCCCTAAGCGCATGCTCCAACATATCTGGCCAGATCCTTATGAGCCTAGTCATGAACCCACCAAAGGTTGGAGATGAGTCATACCCCTCTTATCGTGCAGAAAGAGACAGCATACTATCATCTTTGTCTTGCTGTGCAGAGGCCATGGTGTCCACATTCAACAGCATGGAAGGGATGACTTGCAACAAGGCTGAAGGTGGAATATCTGTGTTCCCTAGTGTTCGGCTGCCGCCACGGGCAATTGAAGCTGCTGAGGCGATGAACACAGAGCCGGATGTGTTCTATGCTCTCCGTCTTCTCGAAAGCACTGGGATTGTTGTTGTGCCTGGCTCAGTGTTTGGACAAGTACCTGGAACATGGCATTTCAGATGCACAATTCTGCCACAGGAAGAGAAGACACGGCAGATTATCTCCCGCTTTAATGTGTTCCATGAAGCATTTATGGAAGAATTCCGCAGCTAAAAGGCGCAAACATTCTTTTTCCATATGTAGTATAACTCTATGTACTTTCTATGACTGATAAGTGATAAGTGATAAGTGTGAGATTTCTACCTGAATCTCTCAGCTGTCATGTTCCAATCCTGTACAGATTATCACATAGAGTCCTACCATCATAAAATTCTCTAGGGTCCTACCATCATAAAAAAATCAGGTAAAAAACATCGGTTTCGGTGTGCTGTAAAAACCAAGGTGGACAAAGTTGGCAGGAAGCAAGTTGGAAGTCCTTGTCATGAGTCATGACACTGAATATATAACTAGGTTCTTTTAATCCAATAATGATACAAGAGTTAGAAAGGGAATTTGTCACCAATTATGTGTCAATTTAATAGCCATGCAATTGTACCTTAATCTATGCAGCTTAACCAATGATTTATGTTGCAGGGACTTCATTGACCTAACTTCCCCTCTTTAAAATGATATCCACCACCCACTAATGGCCATTTTCATGACATCCACTCCCATGGTTATTACTTATTAGTATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGT-GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAGAAAAAAAGTGTCGTGTCGAACCAAGCTGCTGGGAGTTCGTTTGCCTGTCAATTTGTTGCTTGATAAGAAATTCTCTGAAAGTTAAAAAAAAAA] [+] EMBL AK119373 [TGCCACGTCACCACGCGCGTGCGTCCATGGCCACCGCTTCGTCAGCCGGTCGTGCACGACGACGAGATGAGAGGAGATGAGACGAGTTCCCTCCTCTTCATCCATCCATGGCCGCCTAGCTTAGAGGCTCACCATCGTCACACTGGCTCACTGCTGCATTCCGCATTCCTCGCTCGCTCACCTCACCTCACCTCACTCACCTACATCGCCGGATCGATCGCACCGTCGCCGGCGGCCAACGAGATGCTTCGCGCCGCCGCCCGCGCGCTCACCGTCAGCTCCCTCAACCCAAAGGTGCTCGCGCTGGCGGATCACCACCTCGGCGGACTCGTCGCCCGCCGCGCGCAGAGCATGCAACAAGAGCTAGACGCTAATCCAGCTTCACATCCTTTCAGTGAGATCATCTATTGCAACCACAGCAACCCACAGTCCCAAGGGCAGCAACCAAACAAGTTCTTCCGGGAGGTTCTTGCATTGTGTAATCATCCCCATCTCCTAGACCGGAGTGAGGCCAGCTTCATGTTCAGCTCTGATGCGATAACGAGGGCACGGGAGATTGTAGGCTTCATTCCTGGAAAAACAACTGGAGGATACAGTCACT GGTATTGAAGGGTTGCGTGATGCAATTGCTGCTGGAATAGCTTCTCGCGATGGTTTACCGTCGTATTCGGAGGACATTTTCCTGACAGATGGAGCAGCTGCACCGGTTCATATGATGATGCACTTGTTGATACGTAGCAAGAAGGACGGCATCCTTTGCCCAATTCCATCACACTCTTTGTACACAGATTCTATGGTTCTTCGTGGCGCAACTCTTGTACCGTATTACCTTGATGAATCCAGAGGTTGGAGTGTGAACATTTCAGATCTGAAGAAACAGTTGGATGGTGCCCGGGCAAAGGGCATTGATGTGAGGGGACTTGTGGTGGTAAATCCGGGAAACCCTACTGGGCAGGTTCTTGTGGAGGAAAACCAGTGTGAAATAGTGGAGCTCTGCAAGAATGAATGCCTTGTTCTCCTAGCAGATGAGGTTTACCAAGAAAACATTTACACGGATCAGAAGAAATTTAACTCCTTCAAGAAGGTAGCACGGTCCATAGGCTATGGGGAAGGGGATATATCTTTAGTATCATTCCACTCAGTATCTAATGGATACTACGGAGAATGCGGGAGAAGAGGGGGTTACATGGAGGTCACTGGCTTCAGCTCGGAAGTAAGGGGAGAAGTATACAAAGTTGCATCCCTAAGCGCATGCTCCAACATATCTGGCCAGATCCTTATGAGCCTAGTCATGAACCCACCAAAGGTTGGAGATGAGTCATACCCCTCTTATCGTGCAGAAAGAGACAGCATACTATCATCTTTGTCTTGCTGTGCAGAGGCCATGGTGTCCACATTCAACAGCATGGAAGGGATGACTTGCAACAAGGCTGAAGGTGGAATATCTGTGTTCCCTAGTGTTCGGCTGCCGCCACGGGCAATTGAAGCTGCTGAGGCGATGAACACAGAGCCGGATGTGTTCTATGCTCTCCGTCTTCTCGAAAGCACTGGGATTGTTGTTGTGCCTGGCTCAGTGTTTGGACAAGTACCTGGAACATGGCATTTCAGATGCACAATTCTGCCACAGGAAGAGAAGACACGGCAGATTATCTCCCGCTTTAATGTGTTCCATGAAGCATTTATGGAAGAATTCCGCAGCTAAAAGGCGCAAACATTCTTTTTCCATATGTAGTATAACTCTATGTACTTTCTATGACTGATAAGTGATAAGTGATAAGTGTGAGATTTCTACCTGAATCTCTCAGCTGTCATGTTCCAATCCTGTACAGATTATCACATAGAGTCCTACCATCATAAAATTCTCTAGGGTCCTACCATCATAAAAAAATCAGGTAAAAAACATCGGTTTCGGTGTGCTGTAAAAACCAAGGTGGACAAAGTTGGCAGGAAGCAAGTTGGAAGTCCTTGTCATGAGTCATGACACTGAATATATAACTAGGTTCTTTTAATCCAATAATGATACAAGAGTTAGAAAGGGAATTTGTCACCAATTATGTGTCAATTTAATAGCCATGCAATTGTACCTTAATCTATGCAGCTTAACCAATGATTTATGTTGCAGGGACTTCATTGACCTAACTTCCCCTCTTTAAAATGATATCCACCACCCACTAATGGCCATTTTCATGACATCCACTCCCATGGTTATTACTTATTAGTATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGT GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATACATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTC ] [+] EMBL AK107029 [ CGCCTAGCTTAGAGGCTCACCATCGTCACACTGGCTCACTGCTGCATTCCGCATTCCTCGCTCGCTCACCTCACCTCACCTCACTCACCTACATCGCCGGATCGATCGCACCGTCGCCGGCGGCCAACGAGATGCTTCGCGCCGCCGCCCGCGCGCTCACCGTCAGCTCCCTCAACCCAAAGGTGCTCGCGCTGGCGGATCACCACCTCGGCGGACTCGTCGCCCGCCGCGCGCAGAGCATGCAACAAGAGCTAGACGCTAATCCAGCTTCACATCCTTTCAGTGAGATCATCTATTGCAACCACAGCAACCCACAGTCCCAAGGGCAGCAACCAAACAAGTTCTTCCGGGAGGTTCTTGCATTGTGTAATCATCCCCATCTCCTAGACCGGAGTGAGGCCAGCTTCATGTTCAGCTCTGATGCGATAACGAGGGCACGGGAGATTGTAGGCTTCATTCCTGGAAAAACAACTGGAGGATACAGTCACTGTCAGGGTATTGAAGGGTTGCGTGATGCAATTGCTGCTGGAATAGCTTCTCGCGATGGTTTACCGTCGTATTCGGAGGACATTTTCCTGACAGATGGAGCAGCTGCACCGGTTCATATGATGATGCACTTGTTGATACGTGGCAAGAAGGACGGCATCCTTTGCCCAATTCCATCACACTCTTTGTACACAGATTCTATGGTTCTTCGTGGCGCAACTCTTGTACCGTATTACCTTGATGAATCCAGAGGTTGGAGTGTGAACATTTCAGATCTGAAGAAACAGTTGGATGGTGCCCGGGCAAAGGGCATTGATGTGAGGGGACTTGTGGTGGTAAATCCGGGAAACCCTACTGGGCAGGTTCTTGTGGAGGAAAACCAGTGTGAAATAGTGGAGCTCTGCAAGAATGAATGCCTTGTTCTCCTAGCAGATGAGGTTTACCAGGAAAACATTTACACGGATCAGAAGAAATTTAACTCCTTCAAGAAGGTAGCACGGTCCATAGGCTATGGGGAAGGGGATATATCTTTAGTATCATTCCACTCAGTATCTAATGGATACTACGGAGAATGCGGGAGAAGAGGGGGTTACATGGAGGTCACTGGCTTCAGCTCGGAAGTAAGGGGAGAAGTATACAAAGTTGCATCCCTAAGCGCATGCTCCAACATATCTGGCCAGATCCTTATGAGCCTAGTCATGAACCCACCAAAGGTTGGAGATGAGTCATACCCCTCTTATCGTGCAGAAAGAGACAGCATACTATCATCTTTGTCTTGCTGTGCAGAGGCCATGGTGTCCACATTCAACAGCATGGAAGGGATGACTTGCAACAAGGCTG AGGTGGAATATCTGTGTTCCCTAGTGTTCGGCTGCCGCCACGGGCAATTGAAGCTGCTGAGGCGATGAACACAGAGCCGGATGTGTTCTATGCTCTCCGTCTTCTCGAAAGCACTGGGATTGTTGTTGTGCCTGGCTCAGTGTTTGGACAAGTACCTGGAACATGGCATTTCAGATGCACAATTCTGCCACAGGAAGAGAAGACACGGCAGATTATCTCCCGCTTTAATGTGTTCCATGAAGCATTTATGGAAGAATTCCGCAGCTAAAAGGCGCAAACATTCTTTTTCCATATGTAGTATAACTCTATGTACTTTCTATGACTGATAAGTGATAAGTGATAAGTGTGAGA ] [+] EMBL CA756565 [ TGCAACAGGCCAT ATCCATGG TTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTAT GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCCGGAATAAGGATTATGCTGTGTTTAGGTACGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAAaaaaaaa ] [+] EMBL AU162318 [ ACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAANGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGNAAGCCTGTCAGTGTGGGGGGAAGAACTG ] [-] EMBL CF282236 [ GGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGT GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAAAAAAAAA ] [-] EMBL CF281842 [ CGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGAGAAGATCAACAGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGT GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAGTTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAAaaaaaaaa ] [+] EMBL AU165215 [ CTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAGAAAAA ] [+] EMBL AU057407 [ AAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAGATTCCTGGTGTCGTGTCGAACCAAGCTGCTGGGAGTTCGTTTGCCTGTCAATTTGTTGCTTGATAAGAAATTCTCTGAAAGTTAAAAAAAAAA] consensusID : consensus_13198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 628 fasta sequence [NTCAGNTCCTAATCCAAGAAGGCTCCNAACTCTNTCACTTCACCAGCAAGNTCAACAANGTCTATGAAGACAAGTGCATGGGCATCCTCTGCTACACCNNCGAGAGCGGCGAGCTGNTCTNCGAGGNCTTCGACGNGGGCCCNAGGCTCNCCTGGCAAGNCATGGAGAAGATCAACAGGGAGAAGGAACTNAAGGCTNAAGAAGNTCGTCGGGAGAGGATGATGCGGATACGGCGTCGCGGGGATCGACTGGAAGCANCTGCGGNCCGCTGTCAGCAAGCCTGTCAGTGTGGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030767 [NTCAGNTCCTAATCCAAGAAGGCTCCNAACTCTNTCACTTCACCAGCAAGNTCAACAANGTCTATGAAGACAAGTGCATGGGCATCCTCTGCTACACCNNCGAGAGCGGCGAGCTGNTCTNCGAGGNCTTCGACGNGGGCCCNAGGCTCNCCTGGCAAGNCATGGAGAAGATCAACAGGGAGAAGGAACTNAAGGCTNAAGAAGNTCGTCGGGAGAGGATGATGCGGATACGGCGTCGCGGGGATCGACTGGAAGCANCTGCGGNCCGCTGTCAGCAAGCCTGTCAGTGTGGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGTTTGTGTGTATATAGAGTATGTAGATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCCAACTTCCAAGTTGATCAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA758225 [ AAGAACTAAACAAGCTGACAAGCTTACTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGAAGAAACAAGTTATGCTTGTTTGTGTGTATATAAAGTATGTAAATCGATCTCCATTGCTGCTGCTTTCTCCGGAATAAGGATTATGCTGTGTTTAGGTAGGATTAGGACGAGACAAACAGGGGCGTGATGCTGATCTAACTGGTCAGCTCCTGGCTTCCAATTGATAAAGAGA ] consensusID : consensus_13198#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 626 fasta sequence [TTCGCCCTTACTGACTGGACTGAAGGAGTAGAAAATTTTTCATGACATCCACTCCCATGGTTATTACTTATTAGTATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGNGAGAAGATCAACAGGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGGTTCGC-GGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGTGGGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGGTTTGTGTGTATATAGAGTATGGTAGATCGATCTCCA] [+] EMBL CF282235 [TTCGCCCTTACTGACTGGACTGAAGGAGTAGAAAATTTTTCATGACATCCACTCCCATGGTTATTACTTATTAGTATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGNGAGAAGATCAACAGGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGGTTCGC GGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGTGGGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGGTTTGTGTGTATATAGAGTATGGTAGATCGATCTCCA] [+] EMBL CF281841 [ ACATCCACTCCCATGGTTATTACTTATTAGTATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCACACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGCAGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTCAACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAGCTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGGGAGAAGATCAACAGGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGATCGGNTTCGCGGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGTGGGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGAAATGTTTCAGATCTTGTAGAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13198#0 TGCCACGTCACCACGCGCGTGCGTCCATGGCCACCGCTTCGTCAGCCGGTCGTGCACGAC 60 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GACGAGATGAGAGGAGATGAGACGAGTTCCCTCCTCTTCATCCATCCATGGCCGCCTAGC 120 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 TTAGAGGCTCACCATCGTCACACTGGCTCACTGCTGCATTCCGCATTCCTCGCTCGCTCA 180 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 CCTCACCTCACCTCACTCACCTACATCGCCGGATCGATCGCACCGTCGCCGGCGGCCAAC 240 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GAGATGCTTCGCGCCGCCGCCCGCGCGCTCACCGTCAGCTCCCTCAACCCAAAGGTGCTC 300 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GCGCTGGCGGATCACCACCTCGGCGGACTCGTCGCCCGCCGCGCGCAGAGCATGCAACAA 360 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GAGCTAGACGCTAATCCAGCTTCACATCCTTTCAGTGAGATCATCTATTGCAACCACAGC 420 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 AACCCACAGTCCCAAGGGCAGCAACCAAACAAGTTCTTCCGGGAGGTTCTTGCATTGTGT 480 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 AATCATCCCCATCTCCTAGACCGGAGTGAGGCCAGCTTCATGTTCAGCTCTGATGCGATA 540 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 ACGAGGGCACGGGAGATTGTAGGCTTCATTCCTGGAAAAACAACTGGAGGATACAGTCAC 600 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 TGGTATTGAAGGGTTGCGTGATGCAATTGCTGCTGGAATAGCTTCTCGCGATGGTTTACC 660 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GTCGTATTCGGAGGACATTTTCCTGACAGATGGAGCAGCTGCACCGGTTCATATGATGAT 720 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GCACTTGTTGATACGTAGCAAGAAGGACGGCATCCTTTGCCCAATTCCATCACACTCTTT 780 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GTACACAGATTCTATGGTTCTTCGTGGCGCAACTCTTGTACCGTATTACCTTGATGAATC 840 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 CAGAGGTTGGAGTGTGAACATTTCAGATCTGAAGAAACAGTTGGATGGTGCCCGGGCAAA 900 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GGGCATTGATGTGAGGGGACTTGTGGTGGTAAATCCGGGAAACCCTACTGGGCAGGTTCT 960 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 TGTGGAGGAAAACCAGTGTGAAATAGTGGAGCTCTGCAAGAATGAATGCCTTGTTCTCCT 1020 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 AGCAGATGAGGTTTACCAAGAAAACATTTACACGGATCAGAAGAAATTTAACTCCTTCAA 1080 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GAAGGTAGCACGGTCCATAGGCTATGGGGAAGGGGATATATCTTTAGTATCATTCCACTC 1140 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 AGTATCTAATGGATACTACGGAGAATGCGGGAGAAGAGGGGGTTACATGGAGGTCACTGG 1200 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 CTTCAGCTCGGAAGTAAGGGGAGAAGTATACAAAGTTGCATCCCTAAGCGCATGCTCCAA 1260 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 CATATCTGGCCAGATCCTTATGAGCCTAGTCATGAACCCACCAAAGGTTGGAGATGAGTC 1320 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 ATACCCCTCTTATCGTGCAGAAAGAGACAGCATACTATCATCTTTGTCTTGCTGTGCAGA 1380 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GGCCATGGTGTCCACATTCAACAGCATGGAAGGGATGACTTGCAACAAGGCTGAAGGTGG 1440 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 AATATCTGTGTTCCCTAGTGTTCGGCTGCCGCCACGGGCAATTGAAGCTGCTGAGGCGAT 1500 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GAACACAGAGCCGGATGTGTTCTATGCTCTCCGTCTTCTCGAAAGCACTGGGATTGTTGT 1560 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 TGTGCCTGGCTCAGTGTTTGGACAAGTACCTGGAACATGGCATTTCAGATGCACAATTCT 1620 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GCCACAGGAAGAGAAGACACGGCAGATTATCTCCCGCTTTAATGTGTTCCATGAAGCATT 1680 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 TATGGAAGAATTCCGCAGCTAAAAGGCGCAAACATTCTTTTTCCATATGTAGTATAACTC 1740 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 TATGTACTTTCTATGACTGATAAGTGATAAGTGATAAGTGTGAGATTTCTACCTGAATCT 1800 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 CTCAGCTGTCATGTTCCAATCCTGTACAGATTATCACATAGAGTCCTACCATCATAAAAT 1860 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 TCTCTAGGGTCCTACCATCATAAAAAAATCAGGTAAAAAACATCGGTTTCGGTGTGCTGT 1920 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 AAAAACCAAGGTGGACAAAGTTGGCAGGAAGCAAGTTGGAAGTCCTTGTCATGAGTCATG 1980 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 ACACTGAATATATAACTAGGTTCTTTTAATCCAATAATGATACAAGAGTTAGAAAGGGAA 2040 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 TTTGTCACCAATTATGTGTCAATTTAATAGCCATGCAATTGTACCTTAATCTATGCAGCT 2100 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 TAACCAATGATTTATGTTGCAGGGACTTCATTGACCTAACTTCCCCTCTTTAAAATGATA 2160 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ---------------------------------------------TTCGCCCTTACTGAC 15 consensus_13198#0 TCCACCACCCACTAATGGCCATTTTCATGACATCCACTCCCATGGTTATTACTTATTAGT 2220 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 TGGACTGAAGGAGTAGAAAATTTTTCATGACATCCACTCCCATGGTTATTACTTATTAGT 75 consensus_13198#0 ATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCAC 2280 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ATTGTTCCTGTTTGCAACAGGCCATCATCCATGGATTCCTTGAGGTGCTACTCACCTCAC 135 consensus_13198#0 ACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGC 2340 consensus_13198#1 ------------------------------------------------------------ consensus_13198#2 ACAATCCTGATTCCGAAGACGATTCGGTCCAGGAATCTGATCAGAGCCTCCATGGATAGC 195 consensus_13198#0 AGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTC 2400 consensus_13198#1 -----NTCAGNTCCT-AATCCAAGAAGGCTCCNAACTCTNTCA-CTTCACCAGCAAGNTC 53 consensus_13198#2 AGCTTCTCAGGTCCTGAATCCAAGAAGGCTCCCAACTCTGTCAGCTTCACCAGCAAGGTC 255 **** **** **************** ****** *** ************* ** consensus_13198#0 AACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAG 2460 consensus_13198#1 AACAANGTCTATGAAGACAAGTGCATGGGCATCCTCTGCTACACCNNCGAGAGCGGCGAG 113 consensus_13198#2 AACAAGGTCTATGAAGACAAGAGCATGGGCATCCTCTGCTACACCGACGAGAGCGGCGAG 315 ***** *************** *********************** ************* consensus_13198#0 CTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGG-AGAAGAT 2519 consensus_13198#1 CTGNTCTNCGAGGNCTTCGACGNGGGCCCNAGGCTCNCCTGGCAAGNCATGG-AGAAGAT 172 consensus_13198#2 CTGATCTGCGAGGGCTTCGACGAGGGCCCAAGGCTCACCTGGCAAGACATGNGAGAAGAT 375 *** *** ***** ******** ****** ****** ********* **** ******* consensus_13198#0 CAACAGGG-AGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGAT-C 2577 consensus_13198#1 CAACAGGG-AGAAGGAACTNAAGGCTNAAGAAGNTCGTCGGGAGAGGATGATGCGGATAC 231 consensus_13198#2 CAACAGGGGAGAAGGAACTGAAGGCTGAAGAAGATCGTCGGGAGAGGATGATGCGGAT-C 434 ******** ********** ****** ****** ************************ * consensus_13198#0 GGCGTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGTG 2637 consensus_13198#1 GGCGTCGCGGGGATCGACTGGAAGCANCTGCGGNCCGCTGTCAGCAAGCCTGTCAGTGTG 291 consensus_13198#2 GGGTTCGCGGGGATCGACTGGAGCAGCCTGCGGACCGCTGTCAGCAAGCCTGTCAGTGTG 494 ** ****************** ****** ************************** consensus_13198#0 GGGG-AAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGA 2696 consensus_13198#1 GGGG-AAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGA 350 consensus_13198#2 GGGGGAAGAACTGAAGAAGTAAACAAGCTGACAAGCTTAGTGCAGTAGGTTATTTTCTGA 554 **** ******************************************************* consensus_13198#0 AATGTTTCAGATCTTGTAGAAACAAGTTATGCTTG-TTTGTGTGTATATAGAGTATG-TA 2754 consensus_13198#1 AATGTTTCAGATCTTGTAGAAACAAGTTATGCTTG-TTTGTGTGTATATAGAGTATG-TA 408 consensus_13198#2 AATGTTTCAGATCTTGTAGAAACAAGTTATGCTTGGTTTGTGTGTATATAGAGTATGGTA 614 *********************************** ********************* ** consensus_13198#0 GATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGA 2814 consensus_13198#1 GATCGATCTCCATTGCTGCTGCTTTCTCTGGAATAAGGATTATGCTGTGTTTAGGTAGGA 468 consensus_13198#2 GATCGATCTCCA------------------------------------------------ 626 ************ consensus_13198#0 TTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAAT 2874 consensus_13198#1 TTAGGAGGAGACAAAGAGGGGCGTGATGCTGATCTAGCTGGTCAGCTCCTGGCTTCCAAT 528 consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 TGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCC 2934 consensus_13198#1 TGATAAAGAGATCATGTAATATATTCTGCTTGGATGATCGTTCAGCTTAATGTTAGTTCC 588 consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 AACTTCCAAGTTGATCAGAAAAAAAGTGTCGTGTCGAACCAAGCTGCTGGGAGTTCGTTT 2994 consensus_13198#1 AACTTCCAAGTTGATCAAAAAAAAAAAAAAAAAAAAAAAA-------------------- 628 consensus_13198#2 ------------------------------------------------------------ consensus_13198#0 GCCTGTCAATTTGTTGCTTGATAAGAAATTCTCTGAAAGTTAAAAAAAAAA 3045 consensus_13198#1 --------------------------------------------------- consensus_13198#2 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||