cluster # 13232

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Oryza sativa
cluster # 13232 cluster # 13232 Sequences # 12 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13232#0 length = 979 sequences # 4
consensus_13232#1 length = 898 sequences # 4

consensus_13232#2 length = 690 sequences # 2
consensus_13232#3 length = 533 sequences # 1
consensus_13232#4 length = 472 sequences # 1

consensusID : consensus_13232#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 979
fasta sequence

                              [GCTCACCGTCCATCGTCGTCCTCCGACCTCAAGCCCCCTCTCCGAGCTGACACGACCAGCTTCAGCACTTCAGTTCGGCTCCGTCCCCGAGTTCGGCAGCCGAGGCGAGTGGGGCAATGGTGGCTCCCGCGACGCTGTCCCTCCGCCCCTTCGCGACCCTCGCGCCGTCCCGCGCCGCGCTGCCCCGCGTCGGCGCCGGGTTCGCGCTCCCGCCCGCCGTCTCGTGCCAGCCGAGGCGGCGGCGCCTGTCGCTCCGCGCCGTGGCCGTCGACTCCGACCAGCAGGGCTCCCCCGAGCCTCCCGATCAGGAGGCGAAGCCGAAGAAGTACCACTTCCTGGTGGCGAACGCCAAGTTCATGCTGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAGGAGAAGCTGCGGCTCTACGGGGAGCGGGAGAAGGAGCAGGACTTCTGGCTGGTGGTGGAGCCCAAGTTCCTCGACAGGTTCCCCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACGGCAACTGGATCACAAACGCTTGAGGAGGCATTGGC-TT-CTAACCCGGTCGAC--TTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTGCTGTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAAGCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTGGTTGGGGTATAATTTTCTTCATGATGCACATTGCTGTCTATGTTGTAAATTTTATCACGGGAAAAATCCAGTCTTCCAGGTCCTAAAAAAAAAA]

[+] EMBL AK063782             [GCTCACCGTCCATCGTCGTCCTCCGACCTCAAGCCCCCTCTCCGAGCTGACACGACCAGCTTCAGCACTTCAGTTCGGCTCCGTCCCCGAGTTCGGCAGCCGAGGCGAGTGGGGCAATGGTGGCTCCCGCGACGCTGTCCCTCCGCCCCTTCGCGACCCTCGCGCCGTCCCGCGCCGCGCTGCCCCGCGTCGGCGCCGGGTTCGCGCTCCCGCCCGCCGTCTCGTGCCAGCCGAGGCGGCGGCGCCTGTCGCTCCGCGCCGTGGCCGTCGACTCCGACCAGCAGGGCTCCCCCGAGCCTCCCGATCAGGAGGCGAAGCCGAAGAAGTACCACTTCCTGGTGGCGAACGCCAAGTTCATGCTGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAGGAGAAGCTGCGGCTCTACGGGGAGCGGGAGAAGGAGCAGGACTTCTGGCTGGTGGTGGAGCCCAAGTTCCTCGACAGGTTCCCCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACGGCAACTGGATCACAAACGCTTGAGGAGGCATTGGC TT CTAACCCGGTCGAC  TTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTGCTGTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAAGCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTGGTTGGGGTATAATTTTC                                                                             ]
[+] EMBL BI807120             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GAGGCATTGGCGTTGCTAACCCGGTCGACAGTGGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAATCTA C ATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCANNGTAAGATTTCTTCCATGCAAGTGCCC AATGTAATCTAAATTGTTAACAATGCCTATGTAATACTTGGGGT CTGTGAGTACAGTTAGCTAC ATANTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAA CAGT GTTTT TTTTGGAAGATTGTGGAC GCTGT GTTGGGGTATAATTTTCTTCATGATGCACATTGCTGTCTATGTTGTAAATTTTATCACGGGAAAAATCCAGTCTTCCAGGTCCTAAAAAAAAAA]
[+] EMBL CB685103             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TACCTCCCCCTTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTGCTGTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAAGCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTGGTTGGGGTATAATTTTCTTCATGATGCACATTGCTGTCTATGTTGTAAATT                                           ]
[+] EMBL CB678703             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACCTCCATAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTGCTGTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAAGCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTGGTTGGGGTATAATTTTC                                                                             ]




>consensus_13232#0
GCTCACCGTCCATCGTCGTCCTCCGACCTCAAGCCCCCTCTCCGAGCTGACACGACCAGC
TTCAGCACTTCAGTTCGGCTCCGTCCCCGAGTTCGGCAGCCGAGGCGAGTGGGGCAATGG
TGGCTCCCGCGACGCTGTCCCTCCGCCCCTTCGCGACCCTCGCGCCGTCCCGCGCCGCGC
TGCCCCGCGTCGGCGCCGGGTTCGCGCTCCCGCCCGCCGTCTCGTGCCAGCCGAGGCGGC
GGCGCCTGTCGCTCCGCGCCGTGGCCGTCGACTCCGACCAGCAGGGCTCCCCCGAGCCTC
CCGATCAGGAGGCGAAGCCGAAGAAGTACCACTTCCTGGTGGCGAACGCCAAGTTCATGC
TGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAGGAGAAGCTGCGGCTCTACGGGGAGC
GGGAGAAGGAGCAGGACTTCTGGCTGGTGGTGGAGCCCAAGTTCCTCGACAGGTTCCCCA
ACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACGGCAACTGGA
TCACAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCT
GAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCT
CCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGA
TTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTT
GGGGTGCTGTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTTCTGGTAATA
CCAGATAAGCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTGGTTGGGGTATAATTT
TCTTCATGATGCACATTGCTGTCTATGTTGTAAATTTTATCACGGGAAAAATCCAGTCTT
CCAGGTCCTAAAAAAAAAA

consensusID : consensus_13232#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 898
fasta sequence

                              [GCAGCCGAGGCGAGTGGGGCAATGGTGGCTCCCGCGACGCTGTCCCTCCGCCCCTTCGCGACCCTCGCTCCGTCCCGCGCCGCGCTGCCCCGCGTCGGCGCCGGGTTCGCGCTCCCGCCCGCCGTCTCGTGCCAGCCGAGGCGGCGGCGCCTGTCGCTCCGCGCCGTGGCCGTCGACTCCGACCAGCAGGGCTCCCCCGAGCCTCCCGACCAGGAGGCGAAGCCGAAGAAGTACCACTTCCTGGTGGCGAACGCCAAGTTCATGCTGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAGGAGAAGCTGCGGCTCTACGGGGAGCGGGAGAAGGAGCAGGACTTCTGGCTGGTAGTGGAGCCCAAGTTCCTCGACAGGTTCCCCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACGGCAACTGGATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTTCTGTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAAGCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTGGTTGGGGTATAATTTTCTTCATGATGCACATTGCTGTCTATGTTGTAAATTTTATCAC]

[+] EMBL CB619299             [GCAGCCGAGGCGAGTGGGGCAATGGTGGCTCCCGCGACGCTGTCCCTCCGCCCCTTCGCGACCCTCGCTCCGTCCCGCGCCGCGCTGCCCCGCGTCGGCGCCGGGTTCGCGCTCCCGCCCGCCGTCTCGTGCCAGCCGAGGCGGCGGCGCCTGTCGCTCCGCGCCGTGGCCGTCGACTCCGACCAGCAGGGCTCCCCCGAGCCTCCCGACCAGGAGGCGAAGCCGAAGAAGTACCACTTCCTGGTGGCGAACGCCAAGTTCATGCTGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAGGAGAAGCTGCGGCTCTACGGGGAGCGGGAGAAGGAGCAGGACTTCTGGCTGGTAGTGGAGCCCAAGTTCCTCGACAGGTTCCCCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACGGCAACTGGATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGT                                                                                                                                                              ]
[-] EMBL CB645978             [                                                                                                                                                                        GCCGTCGACTCCGACCAGCAGGGCTCCCCCGAGCCTCCCGATCAGGAGGCGAAGCCGAAGAAGTACCACTTCCTGGTGGCGAACGCCAAGTTCATGCTGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAGGAGAAGCTGCGGCTCTACGGGGAGCGGGAGAAGGAGCAGGACTTCTGGCTGGTGGTGGAGCCCAAGTTCCTCGACAGGTTCCCCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACGGCAACTGGATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTGCTGTGAGTACAGTTAGCTACGATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAAGCAGTGGTTTTNTTTT                                                                               ]
[-] EMBL CB619300             [                                                                                                                                                                                         GCAGGGCTCCCCGGAGCCTCCCGACCAGGAGGGGAAGCCGAAGAAGTACCACTTCCTGGTGGCGAACGCCAAGTTCATGCTGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAGGAGAAGCTGCGGCTCTACGGGGAGCGGGAGAAGGAGCAGGACTTCTGGCTGGTAGTGGAGCCCAAGTTCCTCGACAGGTTCCCCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACGGCAACTGGATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTTCTGTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAAGCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTGGTTGGGGTATAATTTTCTTCATGATGCACATTGCTGTCTATGTTGTAAATTTTATCAC]
[+] EMBL CA764543             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTTCTGTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAAGCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTGGTTGGGGTATAATTTTCTTCATGATGCACATTGCTGTCTATGTTGTAAATTTTAa   ]




>consensus_13232#1
GCAGCCGAGGCGAGTGGGGCAATGGTGGCTCCCGCGACGCTGTCCCTCCGCCCCTTCGCG
ACCCTCGCTCCGTCCCGCGCCGCGCTGCCCCGCGTCGGCGCCGGGTTCGCGCTCCCGCCC
GCCGTCTCGTGCCAGCCGAGGCGGCGGCGCCTGTCGCTCCGCGCCGTGGCCGTCGACTCC
GACCAGCAGGGCTCCCCCGAGCCTCCCGACCAGGAGGCGAAGCCGAAGAAGTACCACTTC
CTGGTGGCGAACGCCAAGTTCATGCTGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAG
GAGAAGCTGCGGCTCTACGGGGAGCGGGAGAAGGAGCAGGACTTCTGGCTGGTAGTGGAG
CCCAAGTTCCTCGACAGGTTCCCCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCG
CTCGTCTCCACCGACGGCAACTGGATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTA
GCAGAACAATTTGAAGCAGAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTG
AAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGG
GAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCAT
ATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAAT
GCCTATGTAATACTTGGGGTTCTGTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTG
TACTTTCTGGTAATACCAGATAAGCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTG
GTTGGGGTATAATTTTCTTCATGATGCACATTGCTGTCTATGTTGTAAATTTTATCAC

consensusID : consensus_13232#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 690
fasta sequence

                              [CTCCCTCGCCCGGTCCTCCCCCCCTTTGTCNCGGCCGCGNCCTCCTCCCCCTGGCTCGCCCGCCACGCTCCCCCGACTCCATCTGGAGTCGAACCCGAAAGTACCCTTCCTTGTGGCGACCCAAGTCATGCTGACGAAGGACTTCCAGGACACGCTGAAGAGAACTGCGCTCTACGGGGACGGAGAAGGACACGGACTTCTGGCTGGTGGTGGAGCCCAGTTCCTCGACAGGTTCCCCAACATCACCAAGCGCCTCAAGCGCCCCGCCTCGCGCTCGTCTCCACCGACGGCAACTGGATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACCATTTGAAGCAGAAACGCTTGAGGAGGCACTTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAGTCTAGCCATGGAACAGCATAGAGATGATCGCAATCCATATGAGCCATGTAAGATTTCTTCCATGCAAGTGCCCNAATGTAATCTAAATTTTTAACCATGCCTATGTAATACTTGGGGTGCTGTGAGTACAGTTAGCTACCATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAACCAGTGGTTTTGTTTTGGAAAAAAAAAAAAAAAAAA]

[+] EMBL BM037808             [CTCCCTCGCCCGGTCCTCCCCCCCTTTGTCNCGGCCGCGNCCTCCTCCCCCTGGCTCGCCCGCCACGCTCCCCCGACTCCATCTGGAGTCGAACCCGAAAGTACCCTTCCTTGTGGCGACCCAAGTCATGCTGACGAAGGACTTCCAGGACACGCTGAAGAGAACTGCGCTCTACGGGGACGGAGAAGGACACGGACTTCTGGCTGGTGGTGGAGCCCAGTTCCTCGACAGGTTCCCCAACATCACCAAGCGCCTCAAGCGCCCCGCCTCGCGCTCGTCTCCACCGACGGCAACTGGATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACCATTTGAAGCAGAAACGCTTGAGGAGGCACTTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAGTCTAGCCATGGAACAGCATAGAGATGATCGCAATCCATATGAGCCATGTAAGATTTCTTCCATGCAAGTGCCCNAATGTAATCTAAATTTTTAACCATGCCTATGTAATACTTGGGGTGCTGTGAGTACAGTTAGCTACCATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAACCAGTGGTTTTGTTTTGGAAAAAAAAAA        ]
[+] EMBL OSS11945A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ccGGTGCTGTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAAGCAGTGGTTTTGTTTTGGAAAAAAAAAAAAAAAAAA]




>consensus_13232#2
CTCCCTCGCCCGGTCCTCCCCCCCTTTGTCNCGGCCGCGNCCTCCTCCCCCTGGCTCGCC
CGCCACGCTCCCCCGACTCCATCTGGAGTCGAACCCGAAAGTACCCTTCCTTGTGGCGAC
CCAAGTCATGCTGACGAAGGACTTCCAGGACACGCTGAAGAGAACTGCGCTCTACGGGGA
CGGAGAAGGACACGGACTTCTGGCTGGTGGTGGAGCCCAGTTCCTCGACAGGTTCCCCAA
CATCACCAAGCGCCTCAAGCGCCCCGCCTCGCGCTCGTCTCCACCGACGGCAACTGGATC
ACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACCATTTGAAGCAGAAACGCTT
GAGGAGGCACTTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGAC
AGCTCCATACCCCAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAGTCTAGCC
ATGGAACAGCATAGAGATGATCGCAATCCATATGAGCCATGTAAGATTTCTTCCATGCAA
GTGCCCNAATGTAATCTAAATTTTTAACCATGCCTATGTAATACTTGGGGTGCTGTGAGT
ACAGTTAGCTACCATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAACCAGTG
GTTTTGTTTTGGAAAAAAAAAAAAAAAAAA

consensusID : consensus_13232#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [ATGACCAAAACAGTTGTGTTTTTAACCATCCCAAATTCCAAATAGGAAAAGGACCTACCAATCATTGAAAAAGCAAGCATTTACACTTTTAATGATCTTGTAATTGCCGAAACCATGAATTAACTACTTTCAATTTAAGAGCAAGGCAATCCTCCAAGGTAATCCATTTAATTCTTTGGTAACCAGTTTTATGAAGTTGAGGTTAAACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTGGTGTGAGTACAGTTAGCTACAAAAAAACAAAAAAAAAAAAACTCGAGACTAGTTC]

[-] EMBL AW155474             [ATGACCAAAACAGTTGTGTTTTTAACCATCCCAAATTCCAAATAGGAAAAGGACCTACCAATCATTGAAAAAGCAAGCATTTACACTTTTAATGATCTTGTAATTGCCGAAACCATGAATTAACTACTTTCAATTTAAGAGCAAGGCAATCCTCCAAGGTAATCCATTTAATTCTTTGGTAACCAGTTTTATGAAGTTGAGGTTAAACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTGGTGTGAGTACAGTTAGCTACAAAAAAACAAAAAAAAAAAAACTCGAGACTAGTTC]




>consensus_13232#3
ATGACCAAAACAGTTGTGTTTTTAACCATCCCAAATTCCAAATAGGAAAAGGACCTACCA
ATCATTGAAAAAGCAAGCATTTACACTTTTAATGATCTTGTAATTGCCGAAACCATGAAT
TAACTACTTTCAATTTAAGAGCAAGGCAATCCTCCAAGGTAATCCATTTAATTCTTTGGT
AACCAGTTTTATGAAGTTGAGGTTAAACAGGGTCTTAGCAGAACAATTTGAAGCAGAAAC
GCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATG
GACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTC
TAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCC
ATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTGGT
GTGAGTACAGTTAGCTACAAAAAAACAAAAAAAAAAAAACTCGAGACTAGTTC

consensusID : consensus_13232#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [CCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACGGCAACTGGATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTTCTGTGAGTACAGTTAGCTACAATAGTTGCAGNNNTGCTGTACTTTCTGGTAATACCNNNTNAGCAGNNGTTTTGTTTTNNNNNNNNNTGGACNNCTGTNGNTGNGNNNNNNNN]

[+] EMBL CF197216             [CCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACGGCAACTGGATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATGGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTCTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCCATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTTCTGTGAGTACAGTTAGCTACAATAGTTGCAGNNNTGCTGTACTTTCTGGTAATACCNNNTNAGCAGNNGTTTTGTTTTNNNNNNNNNTGGACNNCTGTNGNTGNGNNNNNNNN]




>consensus_13232#4
CCAACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCACCGACGGCAACT
GGATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACAATTTGAAGCAGAAA
CGCTTGAGGAGGCATTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAAT
GGACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGT
CTAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTC
CATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTTC
TGTGAGTACAGTTAGCTACAATAGTTGCAGNNNTGCTGTACTTTCTGGTAATACCNNNTN
AGCAGNNGTTTTGTTTTNNNNNNNNNTGGACNNCTGTNGNTGNGNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13232#0      GCTCACCGTCCATCGTCGTCCTCCGACCTCAAGCCCCCTCTCCGAGCTGACACGACCAGC 60
consensus_13232#1      ------------------------------------------------------------
consensus_13232#2      ------------------------------------------------------------
consensus_13232#4      ------------------------------------------------------------
consensus_13232#3      ------------------------------------------------------------
                                                                                   

consensus_13232#0      TTCAGCACTTCAGTTCGGCTCCGTCCCCGAGTTCGGCAGCCGAGGCGAGTGGGGCAATGG 120
consensus_13232#1      -----------------------------------GCAGCCGAGGCGAGTGGGGCAATGG 25
consensus_13232#2      ------------------------------------------------------------
consensus_13232#4      ------------------------------------------------------------
consensus_13232#3      ------------------------------------------------------------
                                                                                   

consensus_13232#0      TGGCTCCCGCGACGCTGTCCCTCCGCCCCTTCGCGACCCTCGCGCCGTCCCGCGCCGCGC 180
consensus_13232#1      TGGCTCCCGCGACGCTGTCCCTCCGCCCCTTCGCGACCCTCGCTCCGTCCCGCGCCGCGC 85
consensus_13232#2      ------------------------------------------------------------
consensus_13232#4      ------------------------------------------------------------
consensus_13232#3      ------------------------------------------------------------
                                                                                   

consensus_13232#0      TGCCCCGCGTCGGCGCCGGGTTCGCGCTCCCGCCCGCCGTCTCGTGCCAGCCGAGGCGGC 240
consensus_13232#1      TGCCCCGCGTCGGCGCCGGGTTCGCGCTCCCGCCCGCCGTCTCGTGCCAGCCGAGGCGGC 145
consensus_13232#2      ------------------------CTCCCTCGCCCGGT-CCTCCCCCCCTTTGTCNCGGC 35
consensus_13232#4      ------------------------------------------------------------
consensus_13232#3      ------------------------------------------------------------
                                                                                   

consensus_13232#0      GGCGCCTGTCGCTCCGCGCCGTGGCCGTCGACTCCGACCAGCAGGGCTCCCCCGAGCCTC 300
consensus_13232#1      GGCGCCTGTCGCTCCGCGCCGTGGCCGTCGACTCCGACCAGCAGGGCTCCCCCGAGCCTC 205
consensus_13232#2      CGCGNC-----CTCCTCCCCCTGGC--TCGCCCGCCAC-------GCTCCCCCGA----C 77
consensus_13232#4      ------------------------------------------------------------
consensus_13232#3      ------------------------------------------------------------
                                                                                   

consensus_13232#0      CCGATCAGGAGGCGAAGCCGAAGAAGTACCACTTCCTGGTGGCGAACGCCAAGTTCATGC 360
consensus_13232#1      CCGACCAGGAGGCGAAGCCGAAGAAGTACCACTTCCTGGTGGCGAACGCCAAGTTCATGC 265
consensus_13232#2      TCCATCTGGAGTCGAACCCGA--AAGTACC-CTTCCTTGTGGCGA---CCCAAGTCATGC 131
consensus_13232#4      ------------------------------------------------------------
consensus_13232#3      -----------------------------------------ATGACCAAAACAGTTGTGT 19
                                                                                   

consensus_13232#0      TGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAGGAGAAGCTGCGGCTCTACGGGGAGC 420
consensus_13232#1      TGGACGAGGAGGAGCACTTCCAGGAGCAGCTGAAGGAGAAGCTGCGGCTCTACGGGGAGC 325
consensus_13232#2      TG-ACGAAGG-----ACTTCCAGGACACGCTGAAGAGAA--CTGCG-CTCTACGGGGAC- 181
consensus_13232#4      ------------------------------------------------------------
consensus_13232#3      TT-TTAACCATCCCAAATTCCA-----AATAGGAAAAGGACCTACCAATCATTGAAAAA- 72
                                                                                   

consensus_13232#0      GGGAGAAGGAGCAGGACTTCTGGCTGGTGGTGGAGCCCAAGTTCCTCGACAGGTTCCCCA 480
consensus_13232#1      GGGAGAAGGAGCAGGACTTCTGGCTGGTAGTGGAGCCCAAGTTCCTCGACAGGTTCCCCA 385
consensus_13232#2      -GGAGAAGGACACGGACTTCTGGCTGGTGGTGGAGCCCA-GTTCCTCGACAGGTTCCCCA 239
consensus_13232#4      ---------------------------------------------------------CCA 3
consensus_13232#3      ---GCAAGCATTTACACTTTTAA-TGATCTTGTAATTGCCGAAACC--ATGAATTAACTA 126
                                                                                * *

consensus_13232#0      ACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCAC-CGACGGCAACTGG 539
consensus_13232#1      ACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCAC-CGACGGCAACTGG 444
consensus_13232#2      ACATCACCAAGCGCCTCAAGCGCCCCGCC-TCGCGCTCGTCTCCAC-CGACGGCAACTGG 297
consensus_13232#4      ACATCACCAAGCGCCTCAAGCGCCCCGCCGTCGCGCTCGTCTCCAC-CGACGGCAACTGG 62
consensus_13232#3      CTTTCAATTTAAGAGCAAGGCAATCCTCCAAGGTAATCCATTTAATTCTTTGGTAACCAG 186
                          ***      *    * **   ** **   *   **   *  *  *   ** ***  *

consensus_13232#0      ATCAC--------------------------------------------------AAACG 549
consensus_13232#1      ATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACG 504
consensus_13232#2      ATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACCATTTGAAGCAGAAACG 357
consensus_13232#4      ATCACTTTTATGAAGTTGAGGCTAGACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACG 122
consensus_13232#3      TTT-----TATGAAGTTGAGGTTAAACAGGGTCTTAGCAGAACAATTTGAAGCAGAAACG 241
                        *                                                     *****

consensus_13232#0      CTTGAGGAGGCA-TTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATG 608
consensus_13232#1      CTTGAGGAGGCA-TTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATG 563
consensus_13232#2      CTTGAGGAGGCACTTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATG 417
consensus_13232#4      CTTGAGGAGGCA-TTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATG 181
consensus_13232#3      CTTGAGGAGGCA-TTGGCTTCTAACCCGGTCGACTTGAAATTTGACAAGCCTGAGAAATG 300
                       ************ ***********************************************

consensus_13232#0      GACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTC 668
consensus_13232#1      GACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTC 623
consensus_13232#2      GACAGCTCCATACCCCA-GTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAA-GTC 475
consensus_13232#4      GACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTC 241
consensus_13232#3      GACAGCTCCATACCCCAAGTATGAGTATGGATGGTGGGAGCCCTTTCTACCTCCAAAGTC 360
                       ***************** ************************************** ***

consensus_13232#0      TAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCC 728
consensus_13232#1      TAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCC 683
consensus_13232#2      TAGCCATGGAACAGCATAGAGATGATCG-CAATCCATATGAGCCATGTAAGATTTCTTCC 534
consensus_13232#4      TAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCC 301
consensus_13232#3      TAGCAATGGAACAGCATAGAGATGATCGGCAATCCATATGAGCAATGTAAGATTTCTTCC 420
                       **** *********************** ************** ****************

consensus_13232#0      ATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTGCT 788
consensus_13232#1      ATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTTCT 743
consensus_13232#2      ATGCAAGTGCCCNAATGTAATCTAAATTTTTAACCATGCCTATGTAATACTTGGGGTGCT 594
consensus_13232#4      ATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTTCT 361
consensus_13232#3      ATGCAAGTGCCCAAATGTAATCTAAATTTTTAACAATGCCTATGTAATACTTGGGGTGGT 480
                       ************ ********************* **********************  *

consensus_13232#0      GTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAA 848
consensus_13232#1      GTGAGTACAGTTAGCTACAATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAA 803
consensus_13232#2      GTGAGTACAGTTAGCTACCATAGTTGCAGAGTTGCTGTACTTTCTGGTAATACCAGATAA 654
consensus_13232#4      GTGAGTACAGTTAGCTACAATAGTTGCAGNNNTGCTGTACTTTCTGGTAATACCNNNTNA 421
consensus_13232#3      GTGAGTACAGTTAGCTACAAAAAAACAAAAAAAAAAAAACTCGAGACTAGTTC------- 533
                       ****************** * *     *          ***      ** * *       

consensus_13232#0      GCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTGGTTGGGGTATAATTTTCTTCATG 908
consensus_13232#1      GCAGTGGTTTTGTTTTGGAAGATTGTGGACGGCTGTGGTTGGGGTATAATTTTCTTCATG 863
consensus_13232#2      CCAGTGGTTTTGTTTTGGAAAAAAAAAAAAAAAAAA------------------------ 690
consensus_13232#4      GCAGNNGTTTTGTTTTNNNNNNNNNTGGACNNCTGTNGNTGNGNNNNNNNN--------- 472
consensus_13232#3      ------------------------------------------------------------
                                                                                   

consensus_13232#0      ATGCACATTGCTGTCTATGTTGTAAATTTTATCACGGGAAAAATCCAGTCTTCCAGGTCC 968
consensus_13232#1      ATGCACATTGCTGTCTATGTTGTAAATTTTATCAC------------------------- 898
consensus_13232#2      ------------------------------------------------------------
consensus_13232#4      ------------------------------------------------------------
consensus_13232#3      ------------------------------------------------------------
                                                                                   

consensus_13232#0      TAAAAAAAAAA 979
consensus_13232#1      -----------
consensus_13232#2      -----------
consensus_13232#4      -----------
consensus_13232#3      -----------