These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13236#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1754 fasta sequence [AAAGTTTTCTGGAAGGGTCAGTTTGTAGAGAGATCTATGCTGCGCACAGGCACAACCTTTAGGCAGCCACACGCTGGTCTCCTCGAACTCGAACCCTAGCCTTTTGCTGCTCCCTCCGGCCTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCCTCCCGGCGAGATGTCGTCGTCGGTCGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCCAAGGTGCTGCACCTGCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGGAACCAGCGCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAAGAAATAGTTAACAACAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCA-TCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA-ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT-GGAGCTGCTGCTCCAAACCACG-GCACAA-CAGGG-CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCA-GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT-GCAGTATGGCGCATCA-GGGGGCTTCTCTGCTCCT-GCTGCCCCACCA-CA-AGAGTT-GCATACT-TCGCAGCAGATGCCGCCGCCTCAATAT-GGAAAT-CAGCC-TGGACCAGCAGGTGCACCAGGAACC-GGGCAACCACATCCAT-ATTAT-CGCTAAA-TTTAGATTCCT-ATT-CACAACTGGTACT-AT-GCCCT-TTCT-AATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTCATCCGCGGCACAAAATGAAGGGTTTTCATCGAAACTAAAAAAAAAA] [+] EMBL AK101213 [AAAGTTTTCTGGAAGGGTCAGTTTGTAGAGAGATCTATGCTGCGCACAGGCACAACCTTTAGGCAGCCACACGCTGGTCTCCTCGAACTCGAACCCTAGCCTTTTGCTGCTCCCTCCGGCCTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCCTCCCGGCGAGATGTCGTCGTCGGTCGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCCAAGGTGCTGCACCTGCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGGAACCAGCGCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAAGAAATAGTTAACAACAAGAGCCCTGGAGAGACTGCTGGGAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCA TCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCAAACCACG GCACAA CAGGG CAAGTGCCAAATTGGAATCCCGGGAGCTCTGGGTATGCTCCAGCTCCA GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT GCAGTATGGCGCATCA GGGGGCTTCTCTGCTCCT GCTGCCCCACCA CA AGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAAT CAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTAT CGCTAAA TTTAGATTCCT ATT CACAACTGGTACT AT GCCCT TTCT AATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTCATCCGCGGCACAAAATGAAGG ] [+] EMBL AK062562 [ ACAGGCACAACCTTTAGGCAGCCACACGCTGGTCTCCTCGAACTCGAACCCTAGCCTTTTGCTGCTCCCTCCGGCCTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCCTCCCGGCGAGATGTCGTCGTCGGTCGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCCAAGGTGCTGCACCTGCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGGAACCAGCGCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAAGAAATAGTTAACAACAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCA TCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCAAACCACG GCACAA CAGGG CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCA GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT GCAGTATGGCGCATCA GGGGGCTTCTCTGCTCCT GCTGCCCCACCA CA AGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAAT CAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTAT CGCTAAA TTTAGATTCCT ATT CACAACTGGTACT AT GCCCT TTCT AATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCC ] [+] EMBL CF305491 [ CCTTTTGCTGCTCCCTCCGGCCTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCCTCCCGGCGAGATGTCGTCGTCGGTCGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCCAAGGTGCTGCACTTGCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGGCCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTTCACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGGAACCAGCGCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAAGAAATAGTTAACAACAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCATTCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCA ] [+] EMBL C74961 [ AACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCANCACCTGGGAGCTGCTGCTCCAAACCACG GCACAA CAGGG CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCANCTCCA GGAGCATATCCANGTCAAATGTACTCGTCACCAATGGCAGTATGGCGCATCA AGGGGCTTCTCTGCTCCTNGCTGCCCCACCA CA AGAGTTGGCATACTNTCGCAGCAGATGCNGCCGCCTCAATATGGGNAAT CAGCCTTGAACCAGCAAGTGCACCAGGAACCGGGGNAACCACATCCATNATTAT CGCTAAATTTTAGATTCCT AT ] [+] EMBL CB096299 [ agggGGAAGGGCATTGCATCTACGATGGTGGCTATTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCAAACCACG GCACAA CAGGG CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCA GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT GCAGTATGGCGCATCA GGGGGCTTCTCTGCTCCT GCTGCCCCACCA CA AGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAAT CAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTAT CGCTAAA TTTAGATTCCT ATT CACAACTGGTACT AT GCCCT TTCT AATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCA ] [-] EMBL CB680763 [ ATTTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCATACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCAAACCACG GCACAA CAGGG CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCA GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT GCAGTATGGCGCATCA GGGGGCTTCTCTGCTCCT GCTGCCCCACCA CA AGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAAT CAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTAT CGCTAAA TTTAGATTCCT ATT CACAACTGGTACT AT GCCCT TTCT AATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTAAGAAAT ] [+] EMBL AA751034 [ ACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCA ACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCA T GGAGCTGCTGCT CAAACCACGCGCACAA CAGGGCCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCctc ] [+] EMBL BQ907862 [ CCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCATACAACATCTGCT GGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCAAACCACG GCACAATCAGGG CAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCA GGAGCATATCCAGGTCAAATGTACTCGTCACCAAT GCAGTATGGCGCATCA GGGGGCTTCTCTGCTCCT GCTGCCCCACCA CA AGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAATGCAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTATGCGCTAAA TTTAGATTCCTGATTGCACAACTGGTACTGATGGCCCTGTTCTGAATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTCAaaaaaaa ] [+] EMBL BM421510 [ ACCN ACAACATCT CT GGTGCCAAGGTAATCCCCAAGCCGGTGGTGCATATGCACCACCT GGAGCTGCTGCTCCCAACCCCG GCACAA CAGGG CAAGTGCCCAATTGGAATCCCGGGAACTCTGGTTATGCTCCAGCTCCACGGAGCATATCCAGGTCAAATGTACTCGTCACCCAT GCAGTATGGCGCATCACGGGGGCTTCTCTGCTCCT GCTGCCCCCCCACCACAGAGTT GCATACT TCGCAGCAGATGCCGCCGCCTCAATAT GGAAAT CAGCC TGGACCAGCAGGTGCACCAGGAACC GGGCAACCACATCCAT ATTAT CGCTAAA TTTAGATTCCT ATT CACAACTGGTACT AT GCCCT TTCT AATTAGTAACTTTGTGTACCTTTGCCATAGGNCCAAACCCGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCNGTTGTTCTCATCCGCGGCNCCAAATGAAGGGTTTTCATCGAAACTAAAAAAAAAA] consensusID : consensus_13236#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCCTGCCCTTATTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCATCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATTTACGATGGTGGCTACTGTAAGCTCCCACCTGTCCTATTCTCGTCATACT] [+] EMBL CB680762 [CCCTGCCCTTATTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGCAAACGATGTCACCATCGATGTGATCCATCTGGTTTTCTCAGCTTTTGGATTTGTTCACAAAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGCCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCCAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATATCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATCTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGGCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCATACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATTGGAAGGGCATTGCATTTACGATGGTGGCTACTGTAAGCTCCCACCTGTCCTATTCTCGTCATACT] consensusID : consensus_13236#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [AAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACTGNGAGCTGCTGCTCCAAACCACGGCACAACAGGGCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCAGGAGCATATCCAGGTCAAATGTACTCGTCACCAATGCAGTATGGCGCATCAGGGGGCTTCTCTGCTCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCAGCAGATGCCGCCGCCTCAATATGGAAATCAGCCTGGACCAGCAGGTGCACCAGGAACCGGGCAACCACATCCATATTATCGCTTAAATTTAGATTCCTATTCACAACTGGTACTATGCCCTTTCTAATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTAAAAAAAAAAAAAAA] [+] EMBL AU057514 [AAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCTGCTGGGTGGCAAGGTAATCCACAAGCCGGTGGTGCATATGCACCACTGNGAGCTGCTGCTCCAAACCACGGCACAACAGGGCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTCCAGCTCCAGGAGCATATCCAGGTCAAATGTACTCGTCACCAATGCAGTATGGCGCATCAGGGGGCTTCTCTGCTCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCAGCAGATGCCGCCGCCTCAATATGGAAATCAGCCTGGACCAGCAGGTGCACCAGGAACCGGGCAACCACATCCATATTATCGCTTAAATTTAGATTCCTATTCACAACTGGTACTATGCCCTTTCTAATTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTTCTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTAAAAAAAAAAAAAAA] consensusID : consensus_13236#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 170 fasta sequence [TGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCTCTGGGTGGCAAGGTAATCACAACCGTGTGCTTCATGGACTCTCTCAAACACACACACAATCAATATC] [+] EMBL AA751052 [TGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGGTGCGATGCAAGCAGTACCACAACCGCCTGGTGTACCAACAACATCTCTGGGTGGCAAGGTAATCACAACCGTGTGCTTCATGGACTCTCTCAAACACACACACAATCAATATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 AAAGTTTTCTGGAAGGGTCAGTTTGTAGAGAGATCTATGCTGCGCACAGGCACAACCTTT 60 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 AGGCAGCCACACGCTGGTCTCCTCGAACTCGAACCCTAGCCTTTTGCTGCTCCCTCCGGC 120 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CTCCACACGCGCGAGATCCCTTCCCCTCTCCTCCCCTCCCGGCGAGATGTCGTCGTCGGT 180 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CGGCGGCGGCGGCGGGCAGCAGTTCCGGTACACGCAGACGCCGTCCAAGGTGCTGCACCT 240 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 GCGGAACCTGCCGTGGGAGTGCGCGGAGGAGGAGCTCGTCGAGCTCTGCAACCCCTTCGG 300 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CCGCATCGTCAACACCAAGTGCGGCGTCGGCGCCAACCGCAACCAGGCCTTCGTCGAGTT 360 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CACTGACATTAATCAAGCTATTTCGATGGTTTCTTACTTTGCATCATCTTCGGAACCAGC 420 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 GCAAATCCGAGGCAAAACTGTTTACATTCAGTATTCAAACAGACAAGAAATAGTTAACAA 480 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CAAGAGCCCTGGAGAGACTGCTGGAAATGTGTTGCTAGTTACTATAGAAGGTGTTCAAGC 540 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 AAACGATGTCACCATCGATGTGATCCATCTGGTTTTCTCAGCTTTTGGATTTGTTCACAA 600 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 AATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAGC 660 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTCC 720 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 AGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATAT 780 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCATC 840 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 TGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAGG 900 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCCA 960 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 TACTGTGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGTGG 1020 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 AACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCATT 1080 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 GGAAGGGCATTGCATCTACGATGGTGGCTACTGTAAGCTCCACCTGTCATATTCTCGTCA 1140 consensus_13236#1 ------------------------------------------------------------ consensus_13236#2 ---------------AAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGG 45 consensus_13236#3 ---TGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGG 57 consensus_13236#0 TACTGATCTCAATGTAAAGGCACACAGTGACAAGAGCAGGGATTACACAATCCCTCAAGG 1200 consensus_13236#1 ------CCCTGCCCTTATTGCTGGAAATG-TGTTGCTAGTTACTATAGAAGGTGTTCAAG 53 * ** * ** ** * ** * ** * * * consensus_13236#2 TG--CGATGCAAGCAGTACCACAA-CCGCCTGGTGTACCAACAACATCTGCTGGGTGGCA 102 consensus_13236#3 TG--CGATGCAAGCAGTACCACAA-CCGCCTGGTGTACCAACAACATCT-CTGGGTGGCA 113 consensus_13236#0 TG--CGATGCAAGCAGTACCACAA-CCGCCTGGTGTACCAACAACATCTGCTGGGTGGCA 1257 consensus_13236#1 CAAACGATGTCACCATCGATGTGATCCATCTGGTTTTCTCAGCTTTTGGATTTGTTCACA 113 ***** * ** * ** ***** * * * * * * * ** consensus_13236#2 AGGTAATCC------ACAAGCCGGT-GGTGCATATGCACCA---CTGNGAGCTGCTGCTC 152 consensus_13236#3 AGGTAATC-------ACAACCGTGT-GCTTCATGGACTCTC---TCAAACACACACACAA 162 consensus_13236#0 AGGTAATCC------ACAAGCCGGT-GGTGCATATGCACCA---CCTGGAGCTGCTGCTC 1307 consensus_13236#1 AAATAGCCACTTTTGAGAAGGCTGCAGGTTTTCAGGCACTGATTCAATACACAGATGCAG 173 * ** * * ** * * * * * * * consensus_13236#2 CAAACCACGGCACAACAGGGCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTC 212 consensus_13236#3 TCAATATC---------------------------------------------------- 170 consensus_13236#0 CAAACCACGGCACAACAGGGCAAGTGCCAAATTGGAATCCCGGGAACTCTGGGTATGCTC 1367 consensus_13236#1 CCACAGCTTCTGCAGCAAGAGAAGCCTTAGATGGAAGAAGCATCCCAAGGTACTTGCTTC 233 * consensus_13236#2 CAGCTCCAGGAGCATATCCAGGTCAAATGTACTCGTCACCAATGCAGTATGGCGC-ATCA 271 consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CAGCTCCAGGAGCATATCCAGGTCAAATGTACTCGTCACCAATGCAGTATGGCGC-ATCA 1426 consensus_13236#1 CAGAGCATGTAACATCTTGTTGTTTGCGTATTTCGTTCTCTGCGCATAAGGATCTGAATA 293 consensus_13236#2 GGGGGCTTCTCTGCTCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCAGCAGATGCCG 331 consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 GGGGGCTTCTCTGCTCCTGCTGCCCCACCACAAGAGTTGCATACTTCGCAGCAGATGCCG 1486 consensus_13236#1 TCAAGTTCCAGTCACATCGCAGCAGGGATTACACCAACCCTTACCTTCCGGTTAATTCAT 353 consensus_13236#2 CCGCCTCAATATGGAAATCAGCCTGGACCAGCAGGTGCACCAGGAACCGGGCAACCACAT 391 consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CCGCCTCAATATGGAAATCAGCCTGGACCAGCAGGTGCACCAGGAACCGGGCAACCACAT 1546 consensus_13236#1 CTGCAATAGATACGTTACAGCCTGCTGTTGGTGCCGATGGAAGGAAAGTGGAAGCTGAAG 413 consensus_13236#2 CCATATTATCGCTTAAAT---TTAGATTCCTATTCACAACTGGTACTATGCCCTTTCTAA 448 consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CCATATTATCGCT-AAAT---TTAGATTCCTATTCACAACTGGTACTATGCCCTTTCTAA 1602 consensus_13236#1 GCAATGTTCTTCTCGCATCAATTGAAAATATGCAATATGCAGTCACGGTGGATGTTCTCC 473 consensus_13236#2 TTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTT 508 consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 TTAGTAACTTTGTGTACCTTTGCAATAGGGCAAAACCAGTTCCTTTTCCCTGTCTTTCTT 1662 consensus_13236#1 ATACTG-TGTTCTCTGCATTTGGTACAGTCCAGAAAATAGCTATTTTTGAGAAGAACGGT 532 consensus_13236#2 CTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTAAAAAAAAAAAAAAA 568 consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 CTCATGGAACCTTTTTTATAAATAAACTCTTCATCCAGTTGTTCTCATCCGCGGCACAAA 1722 consensus_13236#1 GGAACACAAGCTTTGATTCAGTACCCTGATGTAACTACAGCTTCAGTTGCGAAGGAAGCA 592 consensus_13236#2 ------------------------------------------------------------ consensus_13236#3 ------------------------------------------------------------ consensus_13236#0 ATGAAGGGTTTTCATCGAAACTAAAAAAAAAA---------------------------- 1754 consensus_13236#1 TTGGAAGGGCATTGCATTTACGATGGTGGCTACTGTAAGCTCCCACCTGTCCTATTCTCG 652 consensus_13236#2 ------- consensus_13236#3 ------- consensus_13236#0 ------- consensus_13236#1 TCATACT 659 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||