These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2063 fasta sequence [ATTGGTTATTAGTGGGAGCGTGCATGCCTCCATTTCTGCCGCTATAAATACTCATCTCATCTCATCATCCACCATCAGTCCGTGCAGTTTGGAGCCCACACACCACGATCTCCCGTACCTTCTCTCTGCGAGATGGGGAGGATAAAGAGTAGTAGTGGGCGATGCAGCACGGCGAGGCTGGAGGCGGTCGCCGTCCTCGTCGTCGTCTTCGGCGTCGCGTCGTCGTCGCTGCGAGGATGCATTGCGCAGCAGAGCGGAGGAGGGCTAACCAGGGGCAGCTTCCCCGAGGGGTTCGTCTTCGGCACCGCCTCCGCCGCGTACCAGTACGAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATCGAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTCGGCGACTACCCGGCGACGATGAGGGCGAGGGTGGGGGAGAGGCTGCCGAGGTTCACGGCGGATGAGGCCGCCGTCGTCAAGGGGGCGCTGGATTTCGTCGGCATAAACCACTACACCACCTACTACACGAGGCACAACAACACCAACATCATCGGGACATTGCTCAACAACACCTTGGCAGACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTCTGGTCTGTTAGCACACGAGTGAAAAGGGGTAGTACTGCACTCTGCACCTTGTCAGCTTCAAATTGGAAGTCCGGATTCGGCTAATGCAGAGGGTGGCATTAGCTCCAATCCTATCCATCTATCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTATTTTTGCTGTTCGTATATTTTGACAGGGAGGAGATGGTG] [+] EMBL AY129294 [ATTGGTTATTAGTGGGAGCGTGCATGCCTCCATTTCTGCCGCTATAAATACTCATCTCATCTCATCATCCACCATCAGTCCGTGCAGTTTGGAGCCCACACACCACGATCTCCCGTACCTTCTCTCTGCGAGATGGGGAGGATAAAGAGTAGTAGTGGGCGATGCAGCACGGCGAGGCTGGAGGCGGTCGCCGTCCTCGTCGTCGTCTTCGGCGTCGCGTCGTCNTCGCTGCGAGGATGCATTGCGCAGCAGAGCGGAGGAGGGCTAACCAGGGGCAGCTTCCCCGAGGGGTTCGTCTTCGGCACCGCCTCCGCCGCGTACCAGTACGAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATCGAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTCGGCGACTACCCGGCGACGATGAGGGCGAGGGTGGGGGAGAGGCTGCCGAGGTTCACGGCGGATGAGGCCGCCGTCGTCAAGGGGGCGCTGGATTTCGTCGGCATAAACCACTACACCACCTACTACACGAGGCACAACAACACCAACATCATCGGGACATTGCTCAACAACACCTTGGCAGACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTCTGGTCTGTTAGCACACGAGTGAAAAGGGGTAGTACTGCACTCTGCACCTTGTCAGCTTCAAATTGGAAGTCCGGATTCGGCTAATGCAGAGGGTGGCATTAGCTCCAATCCTATCCATCTATCTCTATTCAACGGCTGTGATTAGTTAAA ] [+] EMBL AK119546 [ TGCAGTTTGGAGCCCACACACCACGATCTCCCGTACCTTCTCTCTGCGAGATGGGGAGGATAAAGAGTAGTAGTGGGCGATGCAGCACGGCGAGGCTGGAGGCGGTCGCCGTCCTCGTCGTCGTCTTCGGCGTCGCGTCGTCGTCGCTGCGAGGATGCATTGCGCAGCAGAGCGGAGGAGGGCTAACCAGGGGCAGCTTCCCCGAGGGGTTCGTCTTCGGCACCGCCTCCGCCGCGTACCAGTACGAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATCGAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTCGGCGACTACCCGGCGACGATGAGGGCGAGGGTGGGGGAGAGGCTGCCGAGGTTCACGGCGGATGAGGCCGCCGTCGTCAAGGGGGCGCTGGATTTCGTCGGCATAAACCACTACACCACCTACTACACGAGGCACAACAACACCAACATCATCGGGACATTGCTCAACAACACCTTGGCAGACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTCTGGTCTGTTAGCACACGAGTGAAAAGGG ] [+] EMBL CB642881 [ CCTCGCCTTCGTCTTCGGCGTCGCGTCGTCGTCGCTGCGAGGATGCATTGCGCAGCAGAGCGGAGGAGGGCTAACCAGGGGCAGCTTCCCCGAGGGGTTCGTCTTCGGCACCGCCTCCGCCGCGTACCAGTACGAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTG ] [+] EMBL AU070534 [ ACTACACGAGGCACAACAACACCAACATCATCGGGACATTGCTCAACAACACCTTGGCAGACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCT ] [-] EMBL CB642882 [ CCAACATCATCGGGACATTGCTCAACAACACCTTGGCAGACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATACCCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATCCATCCGATAGATTTATTGGTCTGCACATATACGAATATCCGATACCCTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTCGTGATACGATAGAATGTATCCCTGAATCGTCTGGTCTGTTAGCACCCGAGTGAAAAGGGGTAGTACTGCACTCTCCTCCTTGTCAGTTTCAAAaaaaaaaag ] [-] EMBL CB642724 [ ACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATATCTCGGAAATGTTTTGTGGTGATTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTTTGGTCTGTTAGCACACGAGTGAAAAGAAGGAGTACTGCACTCTGCCCCTTG ] [-] EMBL CB673496 [ TGGGAAGCCAATTGGAGATAGGGCAAATTCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAAAGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCGTTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTACCTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTACTTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAGGCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTCTGGTCTGTTAGCACACGAGTGAAAAGGGGTAGTACTGCACTCTGCACCTTGTCAGCTTCAAATTGGAAGTCCGGATTCGGCTAATGCAGAGGGTGGCATTAGCTCCAATCCTATCCATCTATCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTATTTTTGCTGTTCGTATATTTTGACAGGGAGGAGATGGTG] [+] EMBL AU033183 [ AATAGTTTGGNCGCCATTTCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCNTGCATATCTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATCGTCTGGTCTGTTAGCACACGANTGAAAAGGGGTAGTACTGCACTCTGCACCTTGTCAGCTTCAAATTGGAAGTCCGGATTCGGCTAATGCAGAGGNTGGCATTAGCTCCAATCCTATCCATCTATCTCTATTCAACGGCTGTGATTAGTTAAAaaaaa ] consensusID : consensus_13249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1823 fasta sequence [CCCTCTCTCCCTCTCTTTGTAACACAAACCAAGATGGGGAATGGAGGGCGATGCATGGTGGAGGTGGTGATACTTCTTGTGTTGATGGCTATGTCGCAAGGATGCGATGCGCAGAATACTACCGGAGGACTGACGAGAAAGAGCTTCCCTAATGGCTTCGTCTTTGGAACCGCTTCATCGGCTTATCAGTATGAAGGTGCTGTCAAGGAGGACGGAAGGGGGCCAACCATTTGGGACAAATTCGCACATACATTTGGAAAGATCATTGACTTCAGCAATGCTGATGTTGCAGTGGATCAGTACCACCGTTTCGAGGAAGATATTCAGCTTATGGCAGACATGGGGATGGATGCATATAGATTCTCAATTTCATGGTCTAGGATTTTCCCAAATGGCACTGGTGAGGTCAACCAGGCAGGCATTGATCACTACAACAAGCTAATCAACGCATTACTAGCTAAAGGAATTGAACCATATGTAACGCTCTATCACTGGGACCTTCCACAAGCTTTGGAGGACAAGTACACTGGGTGGCTTGACAGGCAGATCATCAATGATTATGCGGTATATGCTGAGACGTGCTTCCAGGCATTTGGGGACAGGGTGAAGCACTGGATCACCTTCAACGAGCCCCACACCGTCGCGGTGCAGGCCTATGACAGCGGGATGCATGCACCGGGCCGCTGCTCGGTGCTCCTGCACCTCTACTGCAAGAAAGGGAATTCAGGCACCGAGCCCTACATAGTTGCTCATAACATGATCCTCTCACATGCCACGGTTTCAGACATATACAGGAAGAAATACAAGGCAAGTCAGAATGGGGAGCTGGGGATATCTTTTGATGTTATATGGTACGAACCAATGTCAAATTCCACAGCTGACATTGAAGCCGCCAAGAGAGCACAGGAATTCCAGCTAGGATGGTTTGCGGATCCCTTCTTCTTCGGAGATTATCCGGCAACGATGAGATCGAGAGTGGGAAGCAGGCTACCGAAGTTCACGGAGAAAGAGGCTGCACTTGTGAACGGATCACTGGACTTCATGGGGATCAATCACTATACCACATTCTACACAAAGGATGACCAATCTACTGTAATAGAAAAATTGCTGAACAACACCTTGGCAGATACTGCAACCATCAGTGTCCCCTTCAGAAATGGACAGCCAATTGGGGATAGGGCCAACTCGATATGGTTGTACATCGTGCCTCGTAGCATGAGGATCTTGATGAACTATGTCAAGGACAGATACAACAAACCAACTGTCTACATAACAGAGAATGGAATGGATGATGGCAACAGCCCCTTCATCTCTCTGAAGAATGCCCTCAAGGACGACAAGAGGACCAAATACCACAATGACTATCTTACAAACTTAGCAGACTCCATAAGGGAGGATGGTTGTGATGTTCGCGGGTATTTTGCATGGTCTCTTCTTGACAACTGGGAGTGGGCCGCTGGATACACCTCGAGATTCGGATTATACTACGTAGACTACAAGAACCGGAAGAGATACCCAAAGAATTCAGTGCAGTGGTTCAAGAATCTCTTGGCATCCTCCTCTTGATCAAATTGAGTCGCCTATATATCAAGATGCCTTGATCATTGCTACCCTACTACTACCTAGTTGTGATTTATACACGCAGGATTGCATACCGAGCAGTGACCATTCATGTATTCATTGATTGTGTAAAGAGATATCATGCATGGACTTGTTGTACATAATTCATAATATTCTTGCACCAAAAACTGAATAAACACAGATTGTAATAATAAAATAGATACATTTTGATGCTACAAGAAAAAGGCGCACATTTGGTCTGA] [+] EMBL AK071372 [CCCTCTCTCCCTCTCTTTGTAACACAAACCAAGATGGGGAATGGAGGGCGATGCATGGTGGAGGTGGTGATACTTCTTGTGTTGATGGCTATGTCGCAAGGATGCGATGCGCAGAATACTACCGGAGGACTGACGAGAAAGAGCTTCCCTAATGGCTTCGTCTTTGGAACCGCTTCATCGGCTTATCAGTATGAAGGTGCTGTCAAGGAGGACGGAAGGGGGCCAACCATTTGGGACAAATTCGCACATACATTTGGAAAGATCATTGACTTCAGCAATGCTGATGTTGCAGTGGATCAGTACCACCGTTTCGAGGAAGATATTCAGCTTATGGCAGACATGGGGATGGATGCATATAGATTCTCAATTTCATGGTCTAGGATTTTCCCAAATGGCACTGGTGAGGTCAACCAGGCAGGCATTGATCACTACAACAAGCTAATCAACGCATTACTAGCTAAAGGAATTGAACCATATGTAACGCTCTATCACTGGGACCTTCCACAAGCTTTGGAGGACAAGTACACTGGGTGGCTTGACAGGCAGATCATCAATGATTATGCGGTATATGCTGAGACGTGCTTCCAGGCATTTGGGGACAGGGTGAAGCACTGGATCACCTTCAACGAGCCCCACACCGTCGCGGTGCAGGCCTATGACAGCGGGATGCATGCACCGGGCCGCTGCTCGGTGCTCCTGCACCTCTACTGCAAGAAAGGGAATTCAGGCACCGAGCCCTACATAGTTGCTCATAACATGATCCTCTCACATGCCACGGTTTCAGACATATACAGGAAGAAATACAAGGCAAGTCAGAATGGGGAGCTGGGGATATCTTTTGATGTTATATGGTACGAACCAATGTCAAATTCCACAGCTGACATTGAAGCCGCCAAGAGAGCACAGGAATTCCAGCTAGGATGGTTTGCGGATCCCTTCTTCTTCGGAGATTATCCGGCAACGATGAGATCGAGAGTGGGAAGCAGGCTACCGAAGTTCACGGAGAAAGAGGCTGCACTTGTGAACGGATCACTGGACTTCATGGGGATCAATCACTATACCACATTCTACACAAAGGATGACCAATCTACTGTAATAGAAAAATTGCTGAACAACACCTTGGCAGATACTGCAACCATCAGTGTCCCCTTCAGAAATGGACAGCCAATTGGGGATAGGGCCAACTCGATATGGTTGTACATCGTGCCTCGTAGCATGAGGATCTTGATGAACTATGTCAAGGACAGATACAACAAACCAACTGTCTACATAACAGAGAATGGAATGGATGATGGCAACAGCCCCTTCATCTCTCTGAAGAATGCCCTCAAGGACGACAAGAGGACCAAATACCACAATGACTATCTTACAAACTTAGCAGACTCCATAAGGGAGGATGGTTGTGATGTTCGCGGGTATTTTGCATGGTCTCTTCTTGACAACTGGGAGTGGGCCGCTGGATACACCTCGAGATTCGGATTATACTACGTAGACTACAAGAACCGGAAGAGATACCCAAAGAATTCAGTGCAGTGGTTCAAGAATCTCTTGGCATCCTCCTCTTGATCAAATTGAGTCGCCTATATATCAAGATGCCTTGATCATTGCTACCCTACTACTACCTAGTTGTGATTTATACACGCAGGATTGCATACCGAGCAGTGACCATTCATGTATTCATTGATTGTGTAAAGAGATATCATGCATGGACTTGTTGTACATAATTCATAATATTCTTGCACCAAAAACTGAATAAACACAGATTGTAATAATAAAATAGATACATTTTGATGCTACAAGAAAAAGGCGCACATTTGGTCTGA] consensusID : consensus_13249#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 767 fasta sequence [TATTTCGCCCTACCAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATCGAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTCG] [+] EMBL CB673495 [TATTTCGCCCTACCAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAGACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCCATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTCTACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTCGCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAGCTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATCGAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTCG] [+] EMBL OSS4668A [ CCGACTTCAGCAATGCTGATGTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGGATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAAGTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGAATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTACAAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTCAGGGAGTTCGGGGACAGGGTGnng ] consensusID : consensus_13249#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 87 fasta sequence [AATCCTATCCATCTGGCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF312542 [AATCCTATCCATCTGGCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13249#1 ------------------------------------------------------------ consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 ATTGGTTATTAGTGGGAGCGTGCATGCCTCCATTTCTGCCGCTATAAATACTCATCTCAT 60 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 ---------------------------------------------------CCCTCTCTC 9 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 CTCATCATCCACCATCAGTCCGTGCAGTTTGGAGCCCACACACCACGATCTCCCGTACCT 120 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 CCTCTCTTTGTAACACAAACCAAGATGGGGAATGGAGGGCGATGCAT---------GGTG 60 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 TCTCTCTGCGAGATGGGGAGGATAAAGAGTAGTAGTGGGCGATGCAGCACGGCGAGGCTG 180 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 GAGGTGGTGATACTTCTTGTGTTGAT---------------GGCTATGTCGCAAGGATGC 105 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 GAGGCGGTCGCCGTCCTCGTCGTCGTCTTCGGCGTCGCGTCGTCGTCGCTGCGAGGATGC 240 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 GATGCGCAGAATACTACCGGAGGACTGACGAGAAAGAGCTTCCCTAATGGCTTCGTCTTT 165 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 ATTGCGCAGCAGAGCGGAGGAGGGCTAACCAGGGGCAGCTTCCCCGAGGGGTTCGTCTTC 300 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 GGAACCGCTTCATCGGCTTATCAGTATGAAGGTGCTGTCAAGGAGGACGGAAGGGGGCCA 225 consensus_13249#2 --------------TATTTCGCCCTACCAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAG 46 consensus_13249#0 GGCACCGCCTCCGCCGCGTACCAGTACGAGGGAGCTGTGAAGGAGGACGGGAGAGGGCAG 360 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 ACCATTTGGGACAAATTCGCACATACATTTGGAAAGATCATTGACTTCAGCAATGCTGAT 285 consensus_13249#2 ACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGAT 106 consensus_13249#0 ACCATCTGGGACACGTTCGCGCACACCTTTGGAAAGATCACCGACTTCAGCAATGCTGAT 420 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 GTTGCAGTGGATCAGTACCACCGTTTCGAGGAAGATATTCAGCTTATGGCAGACATGGGG 345 consensus_13249#2 GTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGG 166 consensus_13249#0 GTTGCAGTTGATCAGTACCACCGTTTCGAGGAGGATATACAGCTCATGGCAGACATGGGG 480 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 ATGGATGCATATAGATTCTCAATTTCATGGTCTAGGATTTTCCCAAATGGCACTGGTGAG 405 consensus_13249#2 ATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAA 226 consensus_13249#0 ATGGATGCGTATCGGTTCTCGATAGCATGGTCAAGAATCTACCCAAATGGTGTTGGTCAA 540 consensus_13249#3 ------------------------------------------------------AATCCT 6 * consensus_13249#1 GTCAACCAGGCAGGCATTGATCACTACAACAAGCTAATCAACGCATTACTAGCTAAAGGA 465 consensus_13249#2 GTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGA 286 consensus_13249#0 GTCAATCAAGCTGGTATCGACCACTACAACAAGCTGATCGATGCACTTCTAGCAAAAGGA 600 consensus_13249#3 ATCCATCTGGCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTAAAAAAAAAAAA 66 ** * * ** * * ** * ** * * * * * *** * consensus_13249#1 ATTGAACCATATGTAACGCTCTATCACTGGGACCTTCCACAAGCTTTGGAGGACAAGTAC 525 consensus_13249#2 ATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTAC 346 consensus_13249#0 ATTCAGCCATATGTGACACTCTACCACTGGGACCTCCCCCAGGCCCTTGAAGACAAGTAC 660 consensus_13249#3 AAAAAAAAAAAAAAAAAAAAA--------------------------------------- 87 * * * * * consensus_13249#1 ACTGGGTGGCTTGACAGGCAGATCATCAATGATTATGCGGTATATGCTGAGACGTGCTTC 585 consensus_13249#2 AAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTC 406 consensus_13249#0 AAGGGCTGGCTTGACAGGCAGATAGTGGACGATTTCGCGGCGTACGCGGAGACGTGCTTC 720 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 CAGGCATTTGGGGACAGGGTGAAGCACTGGATCACCTTCAACGAGCCCCACACCGTCGCG 645 consensus_13249#2 AGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCC 466 consensus_13249#0 AGGGAGTTCGGGGACAGGGTGAAGCACTGGATCACGCTCAACGAGCCGCACACGGTGGCC 780 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 GTGCAGGCCTATGACAGCGGGATGCATGCACCGGGCCGCTGCTCGGTGCTCCTGCACCTC 705 consensus_13249#2 ATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTC 526 consensus_13249#0 ATCCAGGGCTACGACGCAGGGCTCCAGGCCCCCGGCCGCTGCTCCGTGCTGCTCCACCTC 840 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 TACTGCAAGAAAGGGAATTCAGGCACCGAGCCCTACATAGTTGCTCATAACATGATCCTC 765 consensus_13249#2 TACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTC 586 consensus_13249#0 TACTGCAAGGCCGGCAACTCCGGCACCGAGCCCTACGTCGTCGCCCACCACTTCATCCTC 900 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 TCACATGCCACGGTTTCAGACATATACAGGAAGAAATACAAGGCAAGTCAGAATGGGGAG 825 consensus_13249#2 GCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAG 646 consensus_13249#0 GCCCACGCCGCCGCCGCCAGCATCTACAGGACAAAATACAAGGCGACGCAGAACGGGCAG 960 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 CTGGGGATATCTTTTGATGTTATATGGTACGAACCAATGTCAAATTCCACAGCTGACATT 885 consensus_13249#2 CTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATC 706 consensus_13249#0 CTTGGGATAGCGTTCGACGTGATGTGGTTCGAGCCGATGTCCAACACCACGATCGACATC 1020 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 GAAGCCGCCAAGAGAGCACAGGAATTCCAGCTAGGATGGTTTGCGGATCCCTTCTTCTTC 945 consensus_13249#2 GAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTC 766 consensus_13249#0 GAGGCGGCCAAGAGAGCGCAGGAGTTTCAGCTAGGATGGTTTGCTGATCCGTTCTTCTTC 1080 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 GGAGATTATCCGGCAACGATGAGATCGAGAGTGGGAAGCAGGCTACCGAAGTTCACGGAG 1005 consensus_13249#2 G----------------------------------------------------------- 767 consensus_13249#0 GGCGACTACCCGGCGACGATGAGGGCGAGGGTGGGGGAGAGGCTGCCGAGGTTCACGGCG 1140 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 AAAGAGGCTGCACTTGTGAACGGATCACTGGACTTCATGGGGATCAATCACTATACCACA 1065 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 GATGAGGCCGCCGTCGTCAAGGGGGCGCTGGATTTCGTCGGCATAAACCACTACACCACC 1200 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 TTCTACACAAAGGATGACCAATCTACTGTAATAGAAAAATTGCTGAACAACACCTTGGCA 1125 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 TACTACACGAGGCACAACAACACCAACATCATCGGGACATTGCTCAACAACACCTTGGCA 1260 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 GATACTGCAACCATCAGTGTCCCCTTCAGAAATGGACAGCCAATTGGGGATAGGGCCAAC 1185 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 GACACCGGCACCGTCAGCCTCCCATTCAAGAATGGGAAGCCAATTGGAGATAGGGCAAAT 1320 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 TCGATATGGTTGTACATCGTGCCTCGTAGCATGAGGATCTTGATGAACTATGTCAAGGAC 1245 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 TCGATATGGCTGTACATTGTGCCCCGAGGGATGAGGAGCCTGATGAACTATGTCAAGGAA 1380 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 AGATACAACAAACCAACTGTCTACATAACAGAGAATGGAATGGATGATGGCAACAGCCCC 1305 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 AGGTACAACAGCCCACCAGTGTACATCACTGAAAACGGGATGGATGACAGCAACAACCCG 1440 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 TTCATCTCTCTGAAGAATGCCCTCAAGGACGACAAGAGGACCAAATACCACAATGACTAT 1365 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 TTCATTTCCATCAAGGACGCCCTCAAGGACAGCAAGAGGATCAAATACCACAATGACTAC 1500 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 CTTACAAACTTAGCAGACTCCATAAGGGAGGATGGTTGTGATGTTCGCGGGTATTTTGCA 1425 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 CTCACCAATCTGGCTGCTTCCATCAAGGAGGACGGGTGCGACGTACGTGGGTACTTCGCG 1560 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 TGGTCTCTTCTTGACAACTGGGAGTGGGCCGCTGGATACACCTCGAGATTCGGATTATAC 1485 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 TGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGATACTCCTCGAGATTCGGGCTCTAC 1620 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 TACGTAGACTACAAG---AACCGGAAGAGATACCCAAAGAATTCAGTGCAGTGGTTCAAG 1542 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 TTCGTGGACTACAAGGATAACCTCAAGAGATACCCCAAGAACTCGGTGCAGTGGTTCAAG 1680 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 AATCTCTTGGCATCCTC--CTCTTGATCAAATTGAGTCGCCTATATATCAAGATGCCTTG 1600 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 GCCCTCCTGAAGACCTGAACTCCAGCTGAGAAGTAGTGCTACAATAGTTTGGGCGCCATT 1740 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 ATCATTGCTACCCTACTACTACCTAGTTGTG-ATTTATACACGCAGGATTGCATACCGAG 1659 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 TCCATACATCCGATAGATTTATTGGTCTGCACATATACGAATATACGATACCCTGCATAT 1800 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 CAGTGACCATTCATGTATTCATTGATTG---TGTAAAGAGATATCATGCATGGACTTGTT 1716 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 CTCGGAAATGTTTTGTGGTTTTTGTTTTGTTTGTGATACGATAGAATGTATCACTGAATC 1860 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 GTACATAAT-TCATAATATTCTTGCACCAAAAACTGAATAAAC---ACAGATTGTAATAA 1772 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 GTCTGGTCTGTTAGCACACGAGTGAAAAGGGGTAGTACTGCACTCTGCACCTTGTCAGCT 1920 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 TAAAATAGATACATTTTGATGCTACAAGAAAAAGGCGCACATTTGGTCTGA--------- 1823 consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 TCAAATTGGAAGTCCGGATTCGGCTAATGCAGAGGGTGGCATTAGCTCCAATCCTATCCA 1980 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 ------------------------------------------------------------ consensus_13249#2 ------------------------------------------------------------ consensus_13249#0 TCTATCTCTATTCAACGGCTGTGATTAGTTAAACATCTTTCTTATTTTTGCTGTTCGTAT 2040 consensus_13249#3 ------------------------------------------------------------ consensus_13249#1 ----------------------- consensus_13249#2 ----------------------- consensus_13249#0 ATTTTGACAGGGAGGAGATGGTG 2063 consensus_13249#3 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||