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Oryza sativa
cluster # 13259 cluster # 13259       Sequences # 12       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13259#0 length = 950 sequences # 12  

consensusID : consensus_13259#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 950
fasta sequence
                              [TCCCACCTCCCCACACGCAAGCTTCGCAGCGCAGCTTCGC-GGAGACAACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG-CCGCCGCCGCCGACGGCGTCGCGACGCCGTCGGCG-GGGACGGCCCCGCTGACCATCTT-CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG-CCGCGGAGCTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGCCGCAG-CCGGCGCACGCCG-CCGCGC-TCCCGGAGATGCCGATCGCGAGG-AAGGCG-TCGCTGCAGCG-TTTCCTCCAGAAGAGGAAGCACA-GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG-CCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC-TCGGGCTCTGAAGATTTATCTGCCCGGTTT-AG-AGGAGGAGAATATCACAAAGGG-AGAAAAAAAATT-AAGTACTGAC-TAAATTGTTGTTTT-CCATGATTTAAGTTCGTCTCTG-TTTGAGATTTCTTTGG-CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAAAAATGGAAAAAAAAAAAAAAAAAAAAAAAATGAAATGACCGAAACAAACAAATA]

[+] EMBL AK061602             [TCCCACCTCCCCACACGCAAGCTTCGCAGCGCAGCTTCGC GGAGACAACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG CCGCCGCCGCCGACGGCGTCGCGACGCCGTCGGCG GGGACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGAGCTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGCCGCAG CCGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG CCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAAGACTGGAAA                                             ]
[+] EMBL AU197763             [                 CAAGCTTCGCAGCGCAGCTTCGCTGGAGACAACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCGCCCGCCGCCGCCGACGGCGTCGCGACGCCGTCGGCG GGGACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGAGCTNATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CA754319             [                  AAGCTTCGCAGCGCAGCTTCGC GGAGACAACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG CCGCCGCCGCCGACGGCGTCGCGACGCCGTCGGCG GGGACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGAGCTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGCCGCAG CCGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACNACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG CCGGAG AAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTA                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU057470             [                         GCAGCGCA NTTCGC GGAGACAACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG CCGCCGCCGCCGACGGGTTCGCGACGCCGTC GCGNGGNACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGAGTTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGCCGCAG CCGGCGCACGCCG CCGCGCTTCCCGGANTTAACGATCGCGAGG AANGCG TCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU057537             [                                               AACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG CCGCCGCCGCCGACGGGTTCGCGACGCCGTCGGAG NGAACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGA CTCATGAGGCTGGCCGGCTCCGCGTGNTCGCCGCCGCAG CCGGCGCACGCCG CCGCGCTTCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACAGGGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCG CGGCG CCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGAAATGGCTTCGGGCTCTGAAGATTTATCTGCCCGGTTTAAGAAGGAGGAGAATATCACAAAGGGAAGAAAAAAAATTAAAGTACTGACTTAAATTGTTGTTTTCCCATGATTTAAGTTCGTCTCTGTTTTAAGATTTCTTTGGCCCCAAACC                                                                                                                                                                                                                   ]
[+] EMBL AU057826             [                                                                    AGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG CCGCCGCCGCCGACGGGTTCGCGACGCCGTC GCGNGGNACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGA CTCATGAGGCTGGCCGGCTCCGCGTGGNAGCCGCCGCAG CCGGCGCACGCCG CCGCGCTTCCCGGAGATGCCGATCGCGAGG AAGGCGTTCGCTGCAGCGTTTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCG CGGCG CCGGAGAAAAG TTCGCCGTNGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGNTCTGAAGATTTAT TTCCCGGTTT AG AGGAGGAGAATATCACAAAGGG NGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAANTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAAAATT TTTCACTGATTTA                                                                                                                                                                                            ]
[+] EMBL AU057538             [                                                                                                                                                                                                                                                                                                     ctTCGGC  GNGACGNCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGAGCTCATGAGGCTGGCCGG TCCGCGTGCTCGCCGCCGCAG CCGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG CCGGAGAAAAG TTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAAAAA                                                   ]
[+] EMBL AU057827             [                                                                                                                                                                                                                                                                                                                              CCATCTTNCTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGGCCCGCGGAGCTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGCCGCAG CCGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG CCGGAGAAAAG TTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTA   AAAAA                                                     ]
[+] EMBL AU057471             [                                                                                                                                                                                                                                                                                                                                                                                                                           cCCGCCGCAGCCCGGCGCACGCCGCCCGCGC TCCCGGAGATNCCGATCGCGAGGAAAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG CCGGAGAAAAG TTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAaaaaaa                                                                                                       ]
[+] EMBL CF308730             [                                                                                                                                                                                                                                                                                                                                                                                                                                      CCGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAA GCGGCGGTGGCGTCGCCGGCG CCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAA                                                      ]
[-] EMBL CF308731             [                                                                                                                                                                                                                                                                                                                                                                                                                                       CGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCGCCCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAAA                                                     ]
[+] EMBL CF308403             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAAATGACCGAAACAAACAAATA]


>consensus_13259#0 TCCCACCTCCCCACACGCAAGCTTCGCAGCGCAGCTTCGCGGAGACAACGTGAGAAAGAA AGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCA GCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGC AGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGA CTATGCAGCTCTTCCCCCCGCGCGCCGCCGCCGCCGACGGCGTCGCGACGCCGTCGGCGG GGACGGCCCCGCTGACCATCTTCTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGG TCGAGAAGGCCGCGGAGCTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGCCGCAGCCGG CGCACGCCGCCGCGCTCCCGGAGATGCCGATCGCGAGGAAGGCGTCGCTGCAGCGTTTCC TCCAGAAGAGGAAGCACAGGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGG CGTCGCCGGCGCCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACAT GGCTCGGGCTCTGAAGATTTATCTGCCCGGTTTAGAGGAGGAGAATATCACAAAGGGAGA AAAAAAATTAAGTACTGACTAAATTGTTGTTTTCCATGATTTAAGTTCGTCTCTGTTTGA GATTTCTTTGGCCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCAC TAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACA AGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAAAAAT GGAAAAAAAAAAAAAAAAAAAAAAAATGAAATGACCGAAACAAACAAATA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)