These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 950 fasta sequence [TCCCACCTCCCCACACGCAAGCTTCGCAGCGCAGCTTCGC-GGAGACAACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG-CCGCCGCCGCCGACGGCGTCGCGACGCCGTCGGCG-GGGACGGCCCCGCTGACCATCTT-CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG-CCGCGGAGCTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGCCGCAG-CCGGCGCACGCCG-CCGCGC-TCCCGGAGATGCCGATCGCGAGG-AAGGCG-TCGCTGCAGCG-TTTCCTCCAGAAGAGGAAGCACA-GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG-CCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC-TCGGGCTCTGAAGATTTATCTGCCCGGTTT-AG-AGGAGGAGAATATCACAAAGGG-AGAAAAAAAATT-AAGTACTGAC-TAAATTGTTGTTTT-CCATGATTTAAGTTCGTCTCTG-TTTGAGATTTCTTTGG-CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAAAAATGGAAAAAAAAAAAAAAAAAAAAAAAATGAAATGACCGAAACAAACAAATA] [+] EMBL AK061602 [TCCCACCTCCCCACACGCAAGCTTCGCAGCGCAGCTTCGC GGAGACAACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG CCGCCGCCGCCGACGGCGTCGCGACGCCGTCGGCG GGGACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGAGCTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGCCGCAG CCGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG CCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAAGACTGGAAA ] [+] EMBL AU197763 [ CAAGCTTCGCAGCGCAGCTTCGCTGGAGACAACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCGCCCGCCGCCGCCGACGGCGTCGCGACGCCGTCGGCG GGGACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGAGCTNATGA ] [+] EMBL CA754319 [ AAGCTTCGCAGCGCAGCTTCGC GGAGACAACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG CCGCCGCCGCCGACGGCGTCGCGACGCCGTCGGCG GGGACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGAGCTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGCCGCAG CCGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACNACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG CCGGAG AAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTA ] [+] EMBL AU057470 [ GCAGCGCA NTTCGC GGAGACAACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG CCGCCGCCGCCGACGGGTTCGCGACGCCGTC GCGNGGNACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGAGTTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGCCGCAG CCGGCGCACGCCG CCGCGCTTCCCGGANTTAACGATCGCGAGG AANGCG TCGC ] [+] EMBL AU057537 [ AACGTGAGAAAGAAAGAAACGAGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG CCGCCGCCGCCGACGGGTTCGCGACGCCGTCGGAG NGAACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGA CTCATGAGGCTGGCCGGCTCCGCGTGNTCGCCGCCGCAG CCGGCGCACGCCG CCGCGCTTCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACAGGGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCG CGGCG CCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGAAATGGCTTCGGGCTCTGAAGATTTATCTGCCCGGTTTAAGAAGGAGGAGAATATCACAAAGGGAAGAAAAAAAATTAAAGTACTGACTTAAATTGTTGTTTTCCCATGATTTAAGTTCGTCTCTGTTTTAAGATTTCTTTGGCCCCAAACC ] [+] EMBL AU057826 [ AGACGAACGCGAGGTGGTGGAGGTGGACGCCATGGCCGCCGCCGGCAGCAGCAGCAGGTTCGCCGTCACGTGCGGCCTCCTCAGCCAGTACATGCGGGAGCGCCAGCAGCCGCAGCCGCCGGTGACGGTTCTTGAGGCGGTGGCGGAGGAGGAGGAGGAGGAGGACGCGCGGACTATGCAGCTCTTCCCCCCGCGCG CCGCCGCCGCCGACGGGTTCGCGACGCCGTC GCGNGGNACGGCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGA CTCATGAGGCTGGCCGGCTCCGCGTGGNAGCCGCCGCAG CCGGCGCACGCCG CCGCGCTTCCCGGAGATGCCGATCGCGAGG AAGGCGTTCGCTGCAGCGTTTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCG CGGCG CCGGAGAAAAG TTCGCCGTNGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGNTCTGAAGATTTAT TTCCCGGTTT AG AGGAGGAGAATATCACAAAGGG NGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAANTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAAAATT TTTCACTGATTTA ] [+] EMBL AU057538 [ ctTCGGC GNGACGNCCCCGCTGACCATCTT CTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGG CCGCGGAGCTCATGAGGCTGGCCGG TCCGCGTGCTCGCCGCCGCAG CCGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG CCGGAGAAAAG TTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAAAAA ] [+] EMBL AU057827 [ CCATCTTNCTACGACGGGAGGATGGTCGTGGTCGACGACGTCCCGGTCGAGAAGGCCCGCGGAGCTCATGAGGCTGGCCGGCTCCGCGTGCTCGCCGCCGCAG CCGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG CCGGAGAAAAG TTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTA AAAAA ] [+] EMBL AU057471 [ cCCGCCGCAGCCCGGCGCACGCCGCCCGCGC TCCCGGAGATNCCGATCGCGAGGAAAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCG CCGGAGAAAAG TTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAaaaaaa ] [+] EMBL CF308730 [ CCGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAA GCGGCGGTGGCGTCGCCGGCG CCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAA ] [-] EMBL CF308731 [ CGGCGCACGCCG CCGCGC TCCCGGAGATGCCGATCGCGAGG AAGGCG TCGCTGCAGCG TTTCCTCCAGAAGAGGAAGCACA GGATCACGACAACGAGCGAACCATACAAGAAGGCGGCGGTGGCGTCGCCGGCGCCCGGAGAAAAGCTTCGCCGTCGCGCCGGTGAAAGATGAGCCGGCGACATGGC TCGGGCTCTGAAGATTTATCTGCCCGGTTT AG AGGAGGAGAATATCACAAAGGG AGAAAAAAAATT AAGTACTGAC TAAATTGTTGTTTT CCATGATTTAAGTTCGTCTCTG TTTGAGATTTCTTTGG CCCAAACCCAAAGAGTTCTTTCACTGATTTAAGTGATTATTTCCTCCACTAGAGCATATACAGTGTTCTGAAAAATAATGGTAGATTTATCCATTTTTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAAA ] [+] EMBL CF308403 [ TTGTTGATGTACAAGTACAACTGTCTCCATTTCTATGCATAGTATGTAATTAATAATTATTACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAAATGACCGAAACAAACAAATA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||