cluster # 1326

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Oryza sativa
cluster # 1326 cluster # 1326 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1326#0 length = 828 sequences # 1

consensus_1326#1 length = 761 sequences # 1

consensusID : consensus_1326#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 828
fasta sequence

                              [TGCCCCTTCCAGTTCCAACGCCAAGAATGAATCACCTACTGCTTCTTCTTCTGCTGCTGCTTCCTCCAACTCCAAGTCCAAGGAAGACAACAACAACAACTCTACTCAAAGAAACACTAAATGGGGCCCGGATCTCACCCTGGATCCTGCCGTCAGAAAATCCAGAGCTTCGGCCTACCAGAGTCGACTGGAGCAAATTACCAAGGAGCTGATATCGGGATCCCTAGAGATAAGTGAAAATGAAGGCTCGATATCTACTGCAAGGGGCTCAAACTCTGATGGTGCTAACAATGAGAAAGAGAATGTGGGAATGGTTGAGCTCTTGGAACTTGAAAGAAGAGAAATTATTGGTGAAATACTCCATTTAAATCCAGGATATAAGGCTCCTGAAGACTACAAGCCTTTACTCAAGGAAACAAAAATCCCTTTGCCTACAAAAACATATCCAGGGCATAATATAATTGGAGTTCTTATGGGACCTGAGAGCAATGCCCAGAAGCGACTACAGGAAGAAACCGGAGCTAAAATACGAGTATATGGGATTAAGAGAACCAACGGAGAGAAGAGTGAGATTCACCAAGCAGACATAGGTGAAGTGCAAGGTGCTTATGAAGACCTGTACATAAATGTCTCAGCTGACACTCATGACAAAGTAGATGCTGCGACTGCACTGATTGAGCTGCTTCTTACTCCTGTCTCTATAAATTCAAGGGCTATTGAAGCAAATGCTACTGTTTCATCAGCAGTTAGCTCAGGCGGTGCAGATTTAGCTGACCTGCGGCAGGTGCAGAACAACAGTTCTCAGCCAGGTTTTTCTCAGTACCAATC]

[+] EMBL CB644398             [TGCCCCTTCCAGTTCCAACGCCAAGAATGAATCACCTACTGCTTCTTCTTCTGCTGCTGCTTCCTCCAACTCCAAGTCCAAGGAAGACAACAACAACAACTCTACTCAAAGAAACACTAAATGGGGCCCGGATCTCACCCTGGATCCTGCCGTCAGAAAATCCAGAGCTTCGGCCTACCAGAGTCGACTGGAGCAAATTACCAAGGAGCTGATATCGGGATCCCTAGAGATAAGTGAAAATGAAGGCTCGATATCTACTGCAAGGGGCTCAAACTCTGATGGTGCTAACAATGAGAAAGAGAATGTGGGAATGGTTGAGCTCTTGGAACTTGAAAGAAGAGAAATTATTGGTGAAATACTCCATTTAAATCCAGGATATAAGGCTCCTGAAGACTACAAGCCTTTACTCAAGGAAACAAAAATCCCTTTGCCTACAAAAACATATCCAGGGCATAATATAATTGGAGTTCTTATGGGACCTGAGAGCAATGCCCAGAAGCGACTACAGGAAGAAACCGGAGCTAAAATACGAGTATATGGGATTAAGAGAACCAACGGAGAGAAGAGTGAGATTCACCAAGCAGACATAGGTGAAGTGCAAGGTGCTTATGAAGACCTGTACATAAATGTCTCAGCTGACACTCATGACAAAGTAGATGCTGCGACTGCACTGATTGAGCTGCTTCTTACTCCTGTCTCTATAAATTCAAGGGCTATTGAAGCAAATGCTACTGTTTCATCAGCAGTTAGCTCAGGCGGTGCAGATTTAGCTGACCTGCGGCAGGTGCAGAACAACAGTTCTCAGCCAGGTTTTTCTCAGTACCAATC]




>consensus_1326#0
TGCCCCTTCCAGTTCCAACGCCAAGAATGAATCACCTACTGCTTCTTCTTCTGCTGCTGC
TTCCTCCAACTCCAAGTCCAAGGAAGACAACAACAACAACTCTACTCAAAGAAACACTAA
ATGGGGCCCGGATCTCACCCTGGATCCTGCCGTCAGAAAATCCAGAGCTTCGGCCTACCA
GAGTCGACTGGAGCAAATTACCAAGGAGCTGATATCGGGATCCCTAGAGATAAGTGAAAA
TGAAGGCTCGATATCTACTGCAAGGGGCTCAAACTCTGATGGTGCTAACAATGAGAAAGA
GAATGTGGGAATGGTTGAGCTCTTGGAACTTGAAAGAAGAGAAATTATTGGTGAAATACT
CCATTTAAATCCAGGATATAAGGCTCCTGAAGACTACAAGCCTTTACTCAAGGAAACAAA
AATCCCTTTGCCTACAAAAACATATCCAGGGCATAATATAATTGGAGTTCTTATGGGACC
TGAGAGCAATGCCCAGAAGCGACTACAGGAAGAAACCGGAGCTAAAATACGAGTATATGG
GATTAAGAGAACCAACGGAGAGAAGAGTGAGATTCACCAAGCAGACATAGGTGAAGTGCA
AGGTGCTTATGAAGACCTGTACATAAATGTCTCAGCTGACACTCATGACAAAGTAGATGC
TGCGACTGCACTGATTGAGCTGCTTCTTACTCCTGTCTCTATAAATTCAAGGGCTATTGA
AGCAAATGCTACTGTTTCATCAGCAGTTAGCTCAGGCGGTGCAGATTTAGCTGACCTGCG
GCAGGTGCAGAACAACAGTTCTCAGCCAGGTTTTTCTCAGTACCAATC

consensusID : consensus_1326#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 761
fasta sequence

                              [CTTGGAACTTGAAAGAAGAGAAATTATTGGTCAGTGAAGTTTTCCTTTCGTATTGCCATCTTACTGCTTCATATTTTGTGGGGAATGTGATACAGAGATCTGTACCATGCCATGTCTCAAAAATATTTTGTGTTATTTAACTCGATTGTATATCATCTTTAGGTGAAATACTCCATTTAAATCCAGGATATAAGGCTCCTGAAGACTACAAGCCTTTACTCAAGGAAACAAAAATCCCTTTGCCTGTATGTAAAATATTGCCCCTCAATGCTTATTTAGTGGTTTGCATTTGCATCACTAGTTGTTTCCTTGTTCGTGGACATGCTTACTGCTTATCTATTTACTTTTACCTCAAGATGATCTTTTGTATAATCTTGAGCTTCTCCATGAATTGTTGCGCACCAAGAGGAGTTTCTTTCTTTTTAGTTCAATTTGTTACAGTGATTTTTACCAGTGCTTGCTTGGTACAAATGTGTGGCAGTTTCAGCAGAATGTGTGCTACAGTAGCGTGCCATCCACTCATTTATGATACATAGTAATTCATTTATATCTTTAAACAAATCTTCGTAGATACAACATTTGGATGACTAAAGTATGGTGCATTCTGTGCTGTTGCCTATTGTAGACAAAAACATATCCAGGGCATAATATAATTGGAGTTCTTATGGGACCTGAGAGCAATGCCCAGAAGCGACTACAGGAAGAAACCGGAGCTAAAATACGAGTATATGGGATTAAGAGAACCAACGGAGAGAAGAGTG]

[+] EMBL CB673291             [CTTGGAACTTGAAAGAAGAGAAATTATTGGTCAGTGAAGTTTTCCTTTCGTATTGCCATCTTACTGCTTCATATTTTGTGGGGAATGTGATACAGAGATCTGTACCATGCCATGTCTCAAAAATATTTTGTGTTATTTAACTCGATTGTATATCATCTTTAGGTGAAATACTCCATTTAAATCCAGGATATAAGGCTCCTGAAGACTACAAGCCTTTACTCAAGGAAACAAAAATCCCTTTGCCTGTATGTAAAATATTGCCCCTCAATGCTTATTTAGTGGTTTGCATTTGCATCACTAGTTGTTTCCTTGTTCGTGGACATGCTTACTGCTTATCTATTTACTTTTACCTCAAGATGATCTTTTGTATAATCTTGAGCTTCTCCATGAATTGTTGCGCACCAAGAGGAGTTTCTTTCTTTTTAGTTCAATTTGTTACAGTGATTTTTACCAGTGCTTGCTTGGTACAAATGTGTGGCAGTTTCAGCAGAATGTGTGCTACAGTAGCGTGCCATCCACTCATTTATGATACATAGTAATTCATTTATATCTTTAAACAAATCTTCGTAGATACAACATTTGGATGACTAAAGTATGGTGCATTCTGTGCTGTTGCCTATTGTAGACAAAAACATATCCAGGGCATAATATAATTGGAGTTCTTATGGGACCTGAGAGCAATGCCCAGAAGCGACTACAGGAAGAAACCGGAGCTAAAATACGAGTATATGGGATTAAGAGAACCAACGGAGAGAAGAGTG]




>consensus_1326#1
CTTGGAACTTGAAAGAAGAGAAATTATTGGTCAGTGAAGTTTTCCTTTCGTATTGCCATC
TTACTGCTTCATATTTTGTGGGGAATGTGATACAGAGATCTGTACCATGCCATGTCTCAA
AAATATTTTGTGTTATTTAACTCGATTGTATATCATCTTTAGGTGAAATACTCCATTTAA
ATCCAGGATATAAGGCTCCTGAAGACTACAAGCCTTTACTCAAGGAAACAAAAATCCCTT
TGCCTGTATGTAAAATATTGCCCCTCAATGCTTATTTAGTGGTTTGCATTTGCATCACTA
GTTGTTTCCTTGTTCGTGGACATGCTTACTGCTTATCTATTTACTTTTACCTCAAGATGA
TCTTTTGTATAATCTTGAGCTTCTCCATGAATTGTTGCGCACCAAGAGGAGTTTCTTTCT
TTTTAGTTCAATTTGTTACAGTGATTTTTACCAGTGCTTGCTTGGTACAAATGTGTGGCA
GTTTCAGCAGAATGTGTGCTACAGTAGCGTGCCATCCACTCATTTATGATACATAGTAAT
TCATTTATATCTTTAAACAAATCTTCGTAGATACAACATTTGGATGACTAAAGTATGGTG
CATTCTGTGCTGTTGCCTATTGTAGACAAAAACATATCCAGGGCATAATATAATTGGAGT
TCTTATGGGACCTGAGAGCAATGCCCAGAAGCGACTACAGGAAGAAACCGGAGCTAAAAT
ACGAGTATATGGGATTAAGAGAACCAACGGAGAGAAGAGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1326#0      TGCCCCTTCCAGTTCCAACGCCAAGAATGAATCACCTACTGCT-TCTTCTTCTGCTGCTG 59
consensus_1326#1      -----CTTGGAACTTGAAAGAAGAGAAATTATTGGTCAGTGAAGTTTTCCTTTCGTATTG 55
                           ***  *  *  ** *   ****   **     * **   * *** * *  *  **

consensus_1326#0      CT-TCCTCCAACTCCAAGTCCAAGGAAGACAACAACAACAACTCTACTCAAAGAAACACT 118
consensus_1326#1      CCATCTTACTGCTTCATATTTTGTGGGGAATGTGA---------TACAGAGATCTGTACC 106
                      *  ** * *  ** **  *     *  **     *         ***  * *     ** 

consensus_1326#0      AAATGGGGCCCGGATCTCACCCTGGATCCTGCCGTCAGAAAATCCAGAGCTTCGGCCTAC 178
consensus_1326#1      ATGCCATGTCTCAAAAATATTTTGTGTTATTTAACTCGATTGTATATCATCTTTAGGTGA 166
                      *      * *   *    *   **  *  *       **   *  *     *     *  

consensus_1326#0      CAGAGTCGACTGGAG--CAAATTACCAAGGAGCTGATATCGGGATCCCTAGAGATAAGTG 236
consensus_1326#1      AATACTCCATTTAAATCCAGGATATAAGGCTCCTGAAGACTACAAGCCTTTACTCAAG-G 225
                       * * ** * *  *   **   **  * *   ****   *   *  ***  *   *** *

consensus_1326#0      AAAATGAAGGCTCGATATCTACTGCAAGGGGCTCAAACTCTGATGGTGCTAACAATGAGA 296
consensus_1326#1      AAACAAAAATCCCTTTGCCTGTATGTAAAATATTGCCCCTCAATGCT--TATTTAGTGGT 283
                      ***   **  * *  *  **      *     *    *    *** *  **   *   * 

consensus_1326#0      AAGAGAATGTGGGAATGGTTGAGCTCTTGGAACTTGAAA-GAAGAGAAATTATTGGTGAA 355
consensus_1326#1      TTGCATTTGCATCACTAGTTGTTTCCTTGTTCGTGGACATGCTTACTGCTTATCTATTTA 343
                        *    **    * * ****    ****    * ** * *   *    ****   *  *

consensus_1326#0      ATACTCCATTTAAATCCAGGATATAAGGCTCCTGAAGA---CTACAAGCCTTTACTCAAG 412
consensus_1326#1      CTTTTACCTCAAGATGATCTTTTGTATAATCTTGAGCTTCTCCATGAATTGTTGCGCACC 403
                       *  * * *  * **      *   *   ** ***      * *  *    ** * **  

consensus_1326#0      GAAACAAAAATCCCTTTGCCTACAAAAACATATCCAGGGCATAATATAATTGGAGTTCTT 472
consensus_1326#1      AAGAGGAGTTTCTTTCTTTTTAGTTCAATTTGTTACAGTGAT--TTTTACCAGTGCTT-- 459
                       * *  *   **  * *   **    **  * *    *  **  * * *   * * *   

consensus_1326#0      ATGGGACCTGAGAGCAATGCCCAGAAGCGACTACAGGAAGAAACCGGAGCTAAAATACGA 532
consensus_1326#1      -----GCTTGGTACAAATGTGTGGCAGTTTCAGCAGAATGTGTGCTACAGTAGCGTGCCA 514
                            * **  *  ****    * **   *  *** * *    *     **   * * *

consensus_1326#0      GTATATGGGATTAAGAGAACCAACGGAGAGAAGAGTGAGATTCACCAAGCAGACATAGGT 592
consensus_1326#1      -TCCACTCATTTATGATA-----CATAGTAATTCATTTATATCTTTAAACAAATCTTCGT 568
                       *  *     *** ** *     *  **  *    *     **   ** ** *  *  **

consensus_1326#0      GAAGTGCAAGGTGCTTATGAAGACCTGTACATAAATGTCTCAGCTGACACTCAT----GA 648
consensus_1326#1      AGA-TACAACATTTGGATGACTAAA-GTATGGTGCATTCTGTGCTGTTGCCTATTGTAGA 626
                        * * ***  *    ****  *   ***        ***  ****   *  **    **

consensus_1326#0      CAAAG-TAGATGCTGCGACTGCACTGATTGAGCTGCTTCTTACTCCTGTCTCTATAAATT 707
consensus_1326#1      CAAAAACATATCCAGGGCATAATATAATTGGAGTTCTTATGGGACCTGAGAGCA-ATGCC 685
                      ****   * ** * * *  *    * ****   * *** *    ****     * *    

consensus_1326#0      CAAGGGCTATTGAAGCAAATGCTACTGTTTCATCAGCAGTTAGCTCAGGCGGTGCAGATT 767
consensus_1326#1      CAGAAGCGACTACAGGAA--GAAACCG---GAGCTAAAATACGAGTATATGG----GATT 736
                      **   ** * *  ** **  *  ** *    * *   * *  *   *   **    ****

consensus_1326#0      TAGCTGACCTGCGGCAGGTGCAGAACAACAGTTCTCAGCCAGGTTTTTCTCAGTACCAAT 827
consensus_1326#1      AAGAGAACCAACGGAGAGAAGAGTG----------------------------------- 761
                       **   ***  ***   *   **                                     

consensus_1326#0      C 828
consensus_1326#1      -