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Oryza sativa
cluster # 13266 cluster # 13266       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13266#0 length = 1410 sequences # 10  
consensus_13266#1 length = 657 sequences # 1  
consensus_13266#2 length = 330 sequences # 1  

consensusID : consensus_13266#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1410
fasta sequence
                              [TGCTGAAATAATAAAGTCTGTTAGGTTAGTGTTTCCAAACTCAAGTCACCGCCTGTGTTTGCGGCATATCTGTCATAATGCTGTTAAGCATTTGAATCACGTAATTTGCAACCATCCAGAATTTCTATCTGATTTTAAGAGACGTATCTATGAAGAAAGGTCTGTAACGTTCTTTGACTTGAAGTGGAAGGAATTGGTTAACGCATATAATCTAGACGGCAATGATTGGATGAATAATTTATATGCAATGCGTGAAAAGTGGGCTGCTGTGTATTCCCGTGACTCATTTTACGCTGACATGATGACAATCCAAAATGCTGAAGGCACAAGTGATGCATTGAAGAATTTTCGGAGGAAACTCTGCCTTCCAGAATTCTTAGAGGAGTATGAGAAGTGCATAACTAGTTTCCGCCAAAATGAACTAGAAGCA-GATTATAATTCCCGTCAAACCAGT-CCGGTT-CCCTATGTT-CCTGA-TTTGCCTATGTTGAAGACGGCTGCTGAGTCCTATACAAGGAATTTGTATTCGCATTTTGAAGAAGAATTCAAAAAATTGTTCACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACCTTTAAATTCTGAAGAAGAAGCATATGTTGTTTTTAATTCTGAGGATACAA-CAGTATCATGTTCTTGCAGGATGTATGA-GTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAACTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGCAAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATT-CGATGTCAGAAAAGGCGCTTCAGTTTTTGGAAAGTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTAACCGCCTAACCTGCAAAAATACTAGAAAAAAGTGTTCTCAAGGAGGAAAATGGAAATGCACTGCTAGAAGGAGAGGCACCTACAATCAACTGTTATTTTCTGTTTATGTTAAATTCAAATCTCAGTTCTTAACTGTGTGAGGCACTACTCCAAAAAGG-AAAAAAAATTCAAAGAGAATCATGTTGGTCTCATCATAGATAGAGGGCATCCAATTCTCTAGTTGCTGTAGTTCTCTTAACTTTTTCTCCTCTTTGTTCAGGGATGAATCATACATAATTCTGGGCATATCATCAGCTCTCCATCTACTTGGAGTTA]

[+] EMBL AK102082             [TGCTGAAATAATAAAGTCTGTTAGGTTAGTGTTTCCAAACTCAAGTCACCGCCTGTGTTTGCGGCATATCTGTCATAATGCTGTTAAGCATTTGAATCACGTAATTTGCAACCATCCAGAATTTCTATCTGATTTTAAGAGACGTATCTATGAAGAAAGGTCTGTAACGTTCTTTGACTTGAAGTGGAAGGAATTGGTTAACGCATATAATCTAGACGGCAATGATTGGATGAATAATTTATATGCAATGCGTGAAAAGTGGGCTGCTGTGTATTCCCGTGACTCATTTTACGCTGACATGATGACAATCCAAAATGCTGAAGGCACAAGTGATGCATTGAAGAATTTTCGGAGGAAACTCTGCCTTCCAGAATTCTTAGAGGAGTATGAGAAGTGCATAACTAGTTTCCGCCAAAATGAACTAGAAGCA GATTATAATTCCCGTCAAACCAGT CCGGTT CCCTATGTT CCTGA TTTGCCTATGTTGAAGACGGCTGCTGAGTCCTATACAAGGAATTTGTATTCGCATTTTGAAGAAGAATTCAAAAAATTGTTCACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACCTTTAAATTCTGAAGAAGAAGCATATGTTGTTTTTAATTCTGAGGATACAA CAGTATCATGTTCTTGCAGGATGTATGA GTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAACTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGCAAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATT CGATGTCAGAAAAGGCGCTTCAGTTTTTGGAAAGTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTAAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTAACCGCCTAACCTGCAAAAATACTAGAAAAAAGTGTTCTCAAGGAGGAAAATGGAAATGCACTGCTAGAAGGAGAGGCACCTACAATCAACTGTTATTTTCTGTTTATGTTAAATTCAAATCTCAGTTCTTAACTGTGTGAGGCACTACTCCAAAAAGG AAAAAAAATTCAAAGAGAATCATGTTGGTCTCATCATAGATAGAGGGCATCCAATTCTCTAGTTGCTGTAGTTCTCTTAACTTTTTCTCCTCTTTGTTCAGGGATGAATCATACATAATTCTGGGCATATCATCAGCTCTCCATCTACTTGGAGTTA]
[+] EMBL AK102813             [TGCTGAAATAATAAAGTCTGTTAGGTTAGTGTTTCCAAACTCAAGTCACCGCCTGTGTTTGCGGCATATCTGTCATAATGCTGTTAAGCATTTGAATCACGTAATTTGCAACCATCCAGAATTTCTATCTGATTTTAAGAGACGTATCTATGAAGAAAGGTCTGTAACGTTCTTTGACTTGAAGTGGAAGGAATTGGTTAACGCATATAATCTAGACGGCAATGATTGGATGAATAATTTATATGCAATGCGTGAAAAGTGGGCTGCTGTGTATTCCCGTGACTCATTTTACGCTGACATGATGACAATCCAAAATGCTGAAGGCACAAGTGATGCATTGAAGAATTTTCGGAGGAAACTCTGCCTTCCAGAATTCTTAGAGGAGTATGAGAAGTGCATAACTAGTTTCCGCCAAAATGAACTAGAAGCA GATTATAATTCCCGTCAAACCAGT CCGGTT CCCTATGTT CCTGA TTTGCCTATGTTGAAGACGGCTGCTGAGTCCTATACAAGGAATTTGTATTCGCATTTTGAAGAAGAATTCAAAAAATTGTTCACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACCTTTAAATTCTGAAGAAGAAGCATATGTTGTTTTTAATTCTGAGGATACAA CAGTATCATGTTCTTGCAGGATGTATGA GTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAACTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGCAAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATT CGATGTCAGAAAAGGCGCTTCAGTTTTTGGAAAGTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTAACCGCCTAACCTGCAAAAATACTAGAAAAAAGTGTTCTCAAGGAGGAAAATGGAAATGCACTGCTAGAAGGAGAGGCACCTACAATCAACTGTTATTTTCTGTTTATGTTAAATTCAAATCTCAGTTCTTAACTGTGTGAGGCACTACTCCAAAAAGG AAAAA                                                                                                                                                        ]
[+] EMBL CB000514             [                                                                                                   CGTAATTTGCAACCATCCAGAATTTCTATCTGATTTTAAGAGACGTATCTATGAAGAAAGGTCTGTAACGTTCTTTGACTTGAAGTGGAAGGAATTGGTTAACGCATATAATCTAGACGGCAATGATTGGATGAATAATTTATATGCAATGCGTGAAAAGTGGGCTGCTGTGTATTCCCGTGACTCATTTTACGCTGACATGATGACAATCCAAAATGCTGAAGGCACAAGTGATGCATTGAAGAATTTTCGGAGGAAACTCTGCCTTCCAGAATTCTTAGAGGAGTATGAGAAGTGCATAACTAGTTTCCGCCAAAATGAACTAGAAGCA GATTATAATTCCCGTCAAACCAGT CCGGTT CCCTATGTT CCTGA TTTGCCTATGTTGAAGACGGCTGCTGAGTCCTATACAAGGAATTTGTATTCGCATTTTGAAGAAGAATTCAAAAAATTGTTCACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACCTTTAAATTCTGAAGAAGAAGCATATGTTGTTTTTAATTCTGAGGATACAA CAGTATCATGTTCTTGCAGGATGTATGA GTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCCTTACTACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSS13790A            [                                                                                                                                                                                                                                                                                                                                           GATGCATTGAAGAATTTTCGGAGGAAACTCTGCCTTCCAGAATTCTTAGAGGAGTATGAGAAGTGCATAACTAGTTTCCGCCAAAATGAACTAGAAGCA GATTATAATTCCCGTCAAACCAGT CCGGTT CCCTATGTT CCTGA TTTGCCTATGTTGAAGACGGCTGCTGAGTCCTATACAAGGAATTTGTATTCGCATTTTGAAGAAGAATTCAAAAAATTGTTCACTCTGTCTTGTTCGTTGCTATCACANGGCAGNACAATCAGTACTTACAAATTGACACCTTTAAATTCTG AGGAGGAGCATATGNTGTTTTTAATTCTG GGGTTCAACCAGTATCATGTCCTNGCAGGATGTATGAGGTGCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB659905             [                                                                                                                                                                                                                                                                                                                                                                                                                                 TGAACTAGAAGCA GATTATAATTCCCGTCAAACCAGT CCGGTT CCCTATGTT CCTGA TTTGCCTATGTTGAAGACGGCTGCTGAGTCCTATACAAGGAATTTGTATTCGCATTTTGAAGAAGAATTCAAAAAATTGTTCACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACCCCTTTAAATTCTGAAGAAGAAGCATATGTTGTTTTTAATTCTGAGGATACAA CAGTATCATGTTCTTGCAGGATGTATGA GTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAACTACAGCAATATTTTTCCATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGCAAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTTTAAGATATT CGATGTCAGAAAAGGCGCTTCAGTTTTTGGAAAGTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATCCCGGTCAATTTTTTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTAACCCCCTAACCTGCAAAAATACTAGAAAAAAGTGTTCTCAAGGAGGAAAATGGAAATGCCCTGTTAGGGGGAGAG                                                                                                                                                                                                                                                 ]
[+] EMBL AU096472             [                                                                                                                                                                                                                                                                                                                                                                                                                                       AGAAGCAGGATTATAATTCCCGTCAAACCAGTCCCGGTTCCCCTATGTTCCCTGATTTTGCCTATGTTGAAGACGGCTGCTGAGTCCTATACAAGGAATTTGTATTCGCATTTTGAAGAAG ATTCAAAAAATTGTTCACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACCTTTAAATTCTGAAGAAGAAGCATATGTTGTTTTTAATTCTGAGGATACAA CAGTATCATGTTCTTGCAGGATGTATGA GTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAACTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGCAAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATT CGATGTCAGAAAAGGCGCTTCAGTTTTTGGAAAGTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTAACCGCCTAACCTGCAAAAATACTAGAAAAAAGTGTTCTCAAGGAGAAAAA                                                                                                                                                                                                                                                                          ]
[+] EMBL AU166646             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTATGCTATGCAAGCACGCGCTGCGAGTCCTTAACTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGCAAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATT CGATGTCAGAAAAGGCGCTTCAGTTTTTGGAAAGTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTAACCGCCTAACCTGCAAAAATACTAGAAAAAAGTGTTCTCAAGGAGGAAAATGGAAATGCACTGCTAGAAGGAGAGGCACCTAAAAaaaa                                                                                                                                                                                                                                   ]
[+] EMBL BI811187             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TATTCCGA CTCAGTAAAGCCGCTTCATTTTTTGGAAAGT GGGTAAATAA TTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGCAAT GCAGAAAGTTTA GCCATTCAGAATCAATGTACAGCGAAGGGGCCTAACCGCCTAACCTGCAAAAATACTAGAAAAAAGTGTTCTCAAGGAGGAAAATGGAAATGCACTGCTAGAAGGAGAGGCACCTACAATCAACTGTTATTTTCTGTTTATGTTAAATTCAAATCTCAGTTCTTAACTGTGTGAGGCACTACTCCCAAAAGG AAAAAAAATTCAAAGAGAATCATGTTGGTCTCAGCATAGATAGAGGGCATCCAATTCTCTAGTTGCTGTAGTTCTCTTAACTTTTTCTCCTCTTTGTTCAGGGATGAATCATACATAATTCTGGGCATATCATCAGCTCTCCAaaaaaaaaa     ]
[+] EMBL AT003525             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             anAAATACTAGAAAAAAGTGTTCTCAAGGAGGAAAATGGAAATGCNCTGCTAGAAGGAGAGGCACCTACAATCAACTGTTATTTTCTGTTTATGTTAAATTCAAATCTCAGTTCTTAACTGTGTGAGGCNCTACTCCAAAAAGGAAAAAAAAATTCAAAGAGAATCATGTTGGTCTCATCATAGATAGAGGGCATCCAATTCTCTAGTTGCTGTAGTTCTCTTAACTTTTTCTCCTCTTTGTTCAGGGATGAATCATCCATAATTCTGGGCAaaaaaaaa                      ]
[+] EMBL AT003736             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TAGAAAAAAGTGTTCTCAAGGAGGAAAATGGAAATGCNCTGCTAGAAGGAGAGGCACCTACAATCAACTGTTATTTTCTGTTTATGTTAAATTCAAATCTCAGTTCTTAACTGTGTGAGGCACTACTCCAAAAAGGAAAAAAAAATTCAAAGAGAATCATGTTGGTCTCATCATAGATAGAGGGCATCCAATTCTCTAGTTGCTGTAGTTCTCTTAACTTTTTCTCCTCTTTGTTCAGGGATGAATCATACATAATTCTGGGCAaaaaaaaa                      ]


>consensus_13266#0 TGCTGAAATAATAAAGTCTGTTAGGTTAGTGTTTCCAAACTCAAGTCACCGCCTGTGTTT GCGGCATATCTGTCATAATGCTGTTAAGCATTTGAATCACGTAATTTGCAACCATCCAGA ATTTCTATCTGATTTTAAGAGACGTATCTATGAAGAAAGGTCTGTAACGTTCTTTGACTT GAAGTGGAAGGAATTGGTTAACGCATATAATCTAGACGGCAATGATTGGATGAATAATTT ATATGCAATGCGTGAAAAGTGGGCTGCTGTGTATTCCCGTGACTCATTTTACGCTGACAT GATGACAATCCAAAATGCTGAAGGCACAAGTGATGCATTGAAGAATTTTCGGAGGAAACT CTGCCTTCCAGAATTCTTAGAGGAGTATGAGAAGTGCATAACTAGTTTCCGCCAAAATGA ACTAGAAGCAGATTATAATTCCCGTCAAACCAGTCCGGTTCCCTATGTTCCTGATTTGCC TATGTTGAAGACGGCTGCTGAGTCCTATACAAGGAATTTGTATTCGCATTTTGAAGAAGA ATTCAAAAAATTGTTCACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTAC TTACAAATTGACACCTTTAAATTCTGAAGAAGAAGCATATGTTGTTTTTAATTCTGAGGA TACAACAGTATCATGTTCTTGCAGGATGTATGAGTGCACAGGTATGCTATGCAAGCACGC GCTGCGAGTCCTTAACTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAG GTGGACAAAATATGCAAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAA TGGAAGTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAG ATATTCGATGTCAGAAAAGGCGCTTCAGTTTTTGGAAAGTGGGGTAGATAAGTTGACATG TGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCA ATCTTCTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTA CAGCGAAGGGGCCTAACCGCCTAACCTGCAAAAATACTAGAAAAAAGTGTTCTCAAGGAG GAAAATGGAAATGCACTGCTAGAAGGAGAGGCACCTACAATCAACTGTTATTTTCTGTTT ATGTTAAATTCAAATCTCAGTTCTTAACTGTGTGAGGCACTACTCCAAAAAGGAAAAAAA ATTCAAAGAGAATCATGTTGGTCTCATCATAGATAGAGGGCATCCAATTCTCTAGTTGCT GTAGTTCTCTTAACTTTTTCTCCTCTTTGTTCAGGGATGAATCATACATAATTCTGGGCA TATCATCAGCTCTCCATCTACTTGGAGTTA



consensusID : consensus_13266#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 657
fasta sequence
                              [CACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACCTTTAAATTCTGAAGAAGAAGCGTATGTTGTTTTTAATTCTGAGGATACAACAGTATCATGTTCTTGCAGGATGTATGAGTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAACTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGCAAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATTCGATGTCAGAAAAGGCGCTTCAGTTTTTGGAAATTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTAACCGCCTAACCTGCANAAATACTAGAANAAAGTGTTCTCAAGGAGGAAAATGGAAATGCACTGCTAGAAGGAGAGGCACCTAANANAAAAAAAAAAAAAAAAAAAAAAAAAAACTCG]

[+] EMBL CA757252             [CACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACCTTTAAATTCTGAAGAAGAAGCGTATGTTGTTTTTAATTCTGAGGATACAACAGTATCATGTTCTTGCAGGATGTATGAGTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAACTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGCAAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATTCGATGTCAGAAAAGGCGCTTCAGTTTTTGGAAATTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTAACCGCCTAACCTGCANAAATACTAGAANAAAGTGTTCTCAAGGAGGAAAATGGAAATGCACTGCTAGAAGGAGAGGCACCTAANANAAAAAAAAAAAAAAAAAAAAAAAAAAACTCG]


>consensus_13266#1 CACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACC TTTAAATTCTGAAGAAGAAGCGTATGTTGTTTTTAATTCTGAGGATACAACAGTATCATG TTCTTGCAGGATGTATGAGTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAA CTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGC AAAAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTT AAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATTCGATGTCAGA AAAGGCGCTTCAGTTTTTGGAAATTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTT ACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTG CAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTA ACCGCCTAACCTGCANAAATACTAGAANAAAGTGTTCTCAAGGAGGAAAATGGAAATGCA CTGCTAGAAGGAGAGGCACCTAANANAAAAAAAAAAAAAAAAAAAAAAAAAAACTCG



consensusID : consensus_13266#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 330
fasta sequence
                              [TGCTGAAATAATAAAGTCTGTTAGGTTAGTGTTTCCAAACTCAAGTCACCGCCTGTGTTTGCGGCATATCTGTCATAATGCTGTTAAGCATTTGAATCACGTAATTTGCAACCATCCAGAATTTCTATCTGATTTTAAGAGACGTATCTATGAAGAAAGGTCTGTAACGTTCTTTGACTTGAAGTGGAAGGAATTGGTTAACGCATATAATCTAGACGGCAATGATTGGATGAATAATTTATATGCAATGCGTGAAAAGTGGGCTGCTGTGTATTCCCGTGACTCATTTTACGCTGACATGATGACNNTNNNNAATGCTNNNNNNNNNNN]

[+] EMBL CF197206             [TGCTGAAATAATAAAGTCTGTTAGGTTAGTGTTTCCAAACTCAAGTCACCGCCTGTGTTTGCGGCATATCTGTCATAATGCTGTTAAGCATTTGAATCACGTAATTTGCAACCATCCAGAATTTCTATCTGATTTTAAGAGACGTATCTATGAAGAAAGGTCTGTAACGTTCTTTGACTTGAAGTGGAAGGAATTGGTTAACGCATATAATCTAGACGGCAATGATTGGATGAATAATTTATATGCAATGCGTGAAAAGTGGGCTGCTGTGTATTCCCGTGACTCATTTTACGCTGACATGATGACNNTNNNNAATGCTNNNNNNNNNNN]


>consensus_13266#2 TGCTGAAATAATAAAGTCTGTTAGGTTAGTGTTTCCAAACTCAAGTCACCGCCTGTGTTT GCGGCATATCTGTCATAATGCTGTTAAGCATTTGAATCACGTAATTTGCAACCATCCAGA ATTTCTATCTGATTTTAAGAGACGTATCTATGAAGAAAGGTCTGTAACGTTCTTTGACTT GAAGTGGAAGGAATTGGTTAACGCATATAATCTAGACGGCAATGATTGGATGAATAATTT ATATGCAATGCGTGAAAAGTGGGCTGCTGTGTATTCCCGTGACTCATTTTACGCTGACAT GATGACNNTNNNNAATGCTNNNNNNNNNNN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13266#0      ---------------------------TGCTGAAATAATAAAGTCTGTTAGGTTAGTGTT 33
consensus_13266#2      ---------------------------TGCTGAAATAATAAAGTCTGTTAGGTTAGTGTT 33
consensus_13266#1      CACTCTGTCTTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACC 60
                                                   *    ** *** *   **   *  **      

consensus_13266#0      TCCAAACTCAAGTCACCGCCTGTGTTTGCGGCATATCTGTCATAATGCTGTTAAGCATTT 93
consensus_13266#2      TCCAAACTCAAGTCACCGCCTGTGTTTGCGGCATATCTGTCATAATGCTGTTAAGCATTT 93
consensus_13266#1      TTTAAATTCTGAAGAAGAAGCGTATGTTGTTTTTAATTCTGAGGATACAACAGTATCATG 120
                       *  *** **     *      ** * *      **  * * *  ** *          * 

consensus_13266#0      GAATCACGTAATTTGCAACCATCCAGAATTTCTATCTGATTTTAAGAGACGTATCTATGA 153
consensus_13266#2      GAATCACGTAATTTGCAACCATCCAGAATTTCTATCTGATTTTAAGAGACGTATCTATGA 153
consensus_13266#1      TTCTTGCAGGATGTATGAGTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAA 180
                          *  *   ** *   *     ***   * ****   *      *   **  **  * *

consensus_13266#0      ----AGAAAGGTCTGTAACGTTCTTTGACTTGAAGTGGA-AGGAATTGGTTAACGCATAT 208
consensus_13266#2      ----AGAAAGGTCTGTAACGTTCTTTGACTTGAAGTGGA-AGGAATTGGTTAACGCATAT 208
consensus_13266#1      CTACAGCAATATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGC 240
                           ** **  * * **   * *  * **   * **  * *  *  ***  **   **  

consensus_13266#0      AATCTAGACGGCAATGATTGGATGAATAATTTATATGCAATGCGTGAAAAGTGGGCTGCT 268
consensus_13266#2      AATCTAGACGGCAATGATTGGATGAATAATTTATATGCAATGCGTGAAAAGTGGGCTGCT 268
consensus_13266#1      AA---AAGCCGGACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGAT 297
                       **   *  * * * *  **** ** * **   **   *** ***  **  *  *   * *

consensus_13266#0      GT----GTATTCCCGTGACTCATTTTACGCTGACATGATGACAATCCAAAATGCTGAAGG 324
consensus_13266#2      GT----GTATTCCCGTGACTCATTTTACGCTGACATGATGACNNTNNNNAATGCTNNNNN 324
consensus_13266#1      GTTAAGATGTGCGCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATTCGATGTC 357
                       **     * * * ***   **     *     **    *  *  *     ** *      

consensus_13266#0      CACAAGTGATGCATTGAAGAATTTTCGGAGGAAACTCTGCCTTCCAGAATTCTTAGAGGA 384
consensus_13266#2      NNNNNN------------------------------------------------------ 330
consensus_13266#1      AGAAAAGGCGCTTCAGTTTTTGGAAATTGGGGTAGATAAGTTGACATGTGAAGTAGAAAA 417
                                                                                   

consensus_13266#0      GTATGAGAAGTGCATAACTAGTTTCCGCCAAAATGAACTAGAAGCAGATTATAATTCCCG 444
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      TTTACTTAGTCACATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTT 477
                                                                                   

consensus_13266#0      TCAAACCAGTCCGGTTCCCTATGTTCCTGATTTGCCTATGTTGAAGACGGCTGCTGAGTC 504
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      TTGCAATGGTGCAATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGC 537
                                                                                   

consensus_13266#0      CTATACAAGGAATTTGTATTCGCATTTTGAAGAAGAATTCAAAAAATTGTTCACTCTGTC 564
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      CTAACCGCCTAACCTGCANAAATACTAGAANAAAGTGTTCTCAAGGAGGAAAATGGAAAT 597
                                                                                   

consensus_13266#0      TTGTTCGTTGCTATCACAAGACAGAACAATCAGTACTTACAAATTGACACCTTTAAATTC 624
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      GCACTGCTAGAAGGAGAGGCACCTAANANAAAAAAAAAAAAAAAAAAAAAAAAAAACTCG 657
                                                                                   

consensus_13266#0      TGAAGAAGAAGCATATGTTGTTTTTAATTCTGAGGATACAACAGTATCATGTTCTTGCAG 684
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      GATGTATGAGTGCACAGGTATGCTATGCAAGCACGCGCTGCGAGTCCTTAACTACAGCAA 744
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      TATTTTTACATTCCCCTCACACTATGTTTACAAAAGGTGGACAAAATATGCAAAAGCCGG 804
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      ACTATTTGGCTGCAGAAACAATTCCCAAAGCGGCAATGGAAGTTCGATGTTAAGATGTGC 864
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      GCGTATATCTCAAAAGATGCACTCAGTTGCTCTAAGATATTCGATGTCAGAAAAGGCGCT 924
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      TCAGTTTTTGGAAAGTGGGGTAGATAAGTTGACATGTGAAGTAGAAAATTTACTTAGTCA 984
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      CATAAACTTAAATGGAAATGGAAATGATACCGGTCAATCTTCTGGTTTTTGCAATGGTGC 1044
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      AATGGCAGAAAGTTTAGGCCATTCAGAATCAATGTACAGCGAAGGGGCCTAACCGCCTAA 1104
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      CCTGCAAAAATACTAGAAAAAAGTGTTCTCAAGGAGGAAAATGGAAATGCACTGCTAGAA 1164
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      GGAGAGGCACCTACAATCAACTGTTATTTTCTGTTTATGTTAAATTCAAATCTCAGTTCT 1224
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      TAACTGTGTGAGGCACTACTCCAAAAAGGAAAAAAAATTCAAAGAGAATCATGTTGGTCT 1284
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      CATCATAGATAGAGGGCATCCAATTCTCTAGTTGCTGTAGTTCTCTTAACTTTTTCTCCT 1344
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      CTTTGTTCAGGGATGAATCATACATAATTCTGGGCATATCATCAGCTCTCCATCTACTTG 1404
consensus_13266#2      ------------------------------------------------------------
consensus_13266#1      ------------------------------------------------------------
                                                                                   

consensus_13266#0      GAGTTA 1410
consensus_13266#2      ------
consensus_13266#1      ------
                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)