These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13270#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1351 fasta sequence [GAAACCGAGCGCCAGCGCCGGCAAACGGAGAATCCCGGCGGAGATGCCGAACCCCAAGCCACCGGCCGGTCGCGCCGGCGGAAACCACGACGGGGCTCTGCCTCTGGCCGGTTTCGCCCCGTACAACCAGATGCCTCCCCCAAACTGGCTGACACACCGATGCCGAGCGGCCGGCGCGCGCGGCTACAAAGGCAGAGCAGGCAGAGGACGGGCTGGATTTTCAAACGCTCGCCGCGGCGCGCGCCGATCGATCGATCGATCGAGGAGGAGCCCTCTACGAGATGGCGGCGGCGGCGGTGCGGCACCGCGAGGTGGAGGTGGCGAGCGGGGTGCGGCTGCACGTGGCGGAGTCGGGACCGGAGGGCGGGCCCGTGGCGCTGCTCGTGCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGATGCGCGCGCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGGCTACGGCGACTCCGACGCGCCGCAGGGCAGGGACTCCTACACCGTCCTCCACCTCGTCGGCGACCTCGTCGCCCTCATCGCCGACCTCGGCCGGCCCCAGGTGTTCGTCGCGGGGCACGACTGGGGCGCCGTCGTGGCGTGGCAGCTGTGCCTGCTCCGGGCGGACCTGGTGACGGCGCATGTCAGCCTCAGCGTGGAGTACCAGCCGAGGCATCCCCGGATGAGCGTGCTCCAGGCCGTCAGGGTTCTCTGCGGGGACGATCACTACGTGTGCCGCTTCCAGAAACCCGGAGTGGCTGAAGCTGAATTTGCTCGACTCGATTTAAACCATCTGTTTAAAATGGTGTTTGGAATGCGCAAACCGGCAACTATTATTCTACCCCAGGACAAGACATTCTTTGATGCAATTGATTCAGATGGTACTTGCCCTCCATGGCTATCAGAGGAAGACATTTCCTACTACGCTGACAAATTCGGCAAAACAGGGTTCACAGGAGGATTCAACTACTACAGATGCATTGACCTGGATTGGGAGCTGACTGCACCATGGACTGGGGCTCTGATAAATGTTCCGATAAAATTCATCGTCGGTGACCTGGATCTCACATACAACACACCAGGTGTGAAGGATTACATTCACAAGGGTGGATTCAAAGCCAATGTGCCGAATCTGGAGGATGTGGTTGTCCTGGAGGGAGTTGGCCACTTCATCAACCAGGAGAAGCCTGATGAGGTTTCTGAACACATCTGTGAGTTCTTTAGCAAGTTTCTGATGTAAACGAAATCTGGTGGAGTCTAGTACATGTCTGTATGTCGACTACAGACATGAATTCCACGGTACTAAAAATCTCCAAATAAAATATCATGGCCACT] [+] EMBL AK058528 [GAAACCGAGCGCCAGCGCCGGCAAACGGAGAATCCCGGCGGAGATGCCGAACCCCAAGCCACCGGCCGGTCGCGCCGGCGGAAACCACGACGGGGCTCTGCCTCTGGCCGGTTTCGCCCCGTACAACCAGATGCCTCCCCCAAACTGGCTGACACACCGATGCCGAGCGGCCGGCGCGCGCGGCTACAAAGGCAGAGCAGGCAGAGGACGGGCTGGATTTTCAAACGCTCGCCGCGGCGCGCGCCGATCGATCGATCGATCGAGGAGGAGCCCTCTACGAGATGGCGGCGGCGGCGGTGCGGCACCGCGAGGTGGAGGTGGCGAGCGGGGTGCGGCTGCACGTGGCGGAGTCGGGACCGGAGGGCGGGCCCGTGGCGCTGCTCGTGCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGATGCGCGCGCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGGCTACGGCGACTCCGACGCGCCGCAGGGCAGGGACTCCTACACCGTCCTCCACCTCGTCGGCGACCTCGTCGCCCTCATCGCCGACCTCGGCCGGCCCCAGGTGTTCGTCGCGGGGCACGACTGGGGCGCCGTCGTGGCGTGGCAGCTGTGCCTGCTCCGGGCGGACCTGGTGACGGCGCATGTCAGCCTCAGCGTGGAGTACCAGCCGAGGCATCCCCGGATGAGCGTGCTCCAGGCCGTCAGGGTTCTCTGCGGGGACGATCACTACGTGTGCCGCTTCCAGAAACCCGGAGTGGCTGAAGCTGAATTTGCTCGACTCGATTTAAACCATCTGTTTAAAATGGTGTTTGGAATGCGCAAACCGGCAACTATTATTCTACCCCAGGACAAGACATTCTTTGATGCAATTGATTCAGATGGTACTTGCCCTCCATGGCTATCAGAGGAAGACATTTCCTACTACGCTGACAAATTCGGCAAAACAGGGTTCACAGGAGGATTCAACTACTACAGATGCATTGACCTGGATTGGGAGCTGACTGCACCATGGACTGGGGCTCTGATAAATGTTCCGATAAAATTCATCGTCGGTGACCTGGATCTCACATACAACACACCAGGTGTGAAGGATTACATTCACAAGGGTGGATTCAAAGCCAATGTGCCGAATCTGGAGGATGTGGTTGTCCTGGAGGGAGTTGGCCACTTCATCAACCAGGAGAAGCCTGATGAGGTTTCTGAACACATCTGTGAGTTCTTTAGCAAGTTTCTGATGTAAACGAAATCTGGTGGAGTCTAGTACATGTCTGTATGTCGACTACAGACATGAATTCCACGGTACTAAAAATCTCCAAATAAAATATCATGGCCACT] consensusID : consensus_13270#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1154 fasta sequence [CTCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCAACCACCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGCCCGGAGGACGGGCCCGCCGT-G-CTGCTCGTCCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGATGCGCGCCCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGGCTACGGCGACTCCGACGCCCCGCCGGGCCGGGACTCCTACACCGTGCTCCACCTCGTGGGCGACCTCGTCGCGCTCATCGCCGACGTCGGCCAGCCCCGGGTGTTCGTGGCGGCGCACGACTGGGGCGCCGCCGTGGCGTGGCAACTGTGCCTGCTCCGCCCCGACCTCGTCACGGCGTTCGTCGCCCTCAGCGTCGAGTACCACCCGCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGA-CGG-CCACTACATC-TGC-TTCTTCC-AGAAACC-TGG-AGTG-GCCG-AAGCTGAATTTGG--TAGAGGTGA-TATAAAGTGT-CTC-TTGAAG-AAATTCTAT-GGAATGCGCAAGGCAGCACCTCTGATTAT-ACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATG-CCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA-AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA--A--AAAAGAATCTGTTCA] [+] EMBL AK102341 [CTCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCAACCACCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGCCCGGAGGACGGGCCCGCCGT G CTGCTCGTCCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGATGCGCGCCCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGGCTACGGCGACTCCGACGCCCCGCCGGGCCGGGACTCCTACACCGTGCTCCACCTCGTGGGCGACCTCGTCGCGCTCATCGCCGACGTCGGCCAGCCCCGGGTGTTCGTGGCGGCGCACGACTGGGGCGCCGCCGTGGCGTGGCAACTGTGCCTGCTCCGCCCCGACCTCGTCACGGCGTTCGTCGCCCTCAGCGTCGAGTACCACCCGCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGA CGG CCACTACATC TGC TTCTTCC AGAAACC TGG AGTG GCCG AAGCTGAATTTGG TAGAGGTGA TATAAAGTGT CTC TTGAAG AAATTCTAT GGAATGCGCAAGGCAGCACCTCTGATTAT ACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATG CCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACT ] [+] EMBL AK109484 [ TCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCAACCACCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGCCCGGAGGACGGGCCCGCCGT G CTGCTCGTCCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGCCACCAGATGCGCGCCCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGGCTACGGCGACTCCGACGCCCCGCCGGGCCGGGACTCCTACACCGTGCTCCACCTCGTGGGCGACCTCGTCGCGCTCATCGCCGACGTCGGCCAGCCCCGGGTGTTCGTGGCGGCGCACGACTGGGGCGCCGCCGTGGCGTGGCAACTGTGCCTGCTCCGCCCCGACCTCGTCACGGCGTTCGTCGCCCTCAGCGTCGAGTACCACCCGCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGA CGG CCACTACATC TGC TTCTTCC AGAAACC TGG AGTG GCCG AAGCTGAATTTGG TAGAGGTGA TATAAAGTGT CTC TTGAAG AAATTCTAT GGAATGCGCAAGGCAGCACCTCTGATTAT ACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATG CCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA A TCAAGca ] [+] EMBL C71971 [ GTCGTCTACTACTNGGCCAGGTGAGGTGCCCAANCANCGCCGTGGTAGNNAGCGCGCNANATGGCGGCGGCGGAGGTNAGGCACCGNACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGCCCGGAGGACGGGCCCG CGTNGACTGCTCGTCCACGGTTTCCCGGAGCTCTGGTACTCGTGGCGCCACCANATGCGCGCCCTCGCCGCGCGGGGTTTCCGCGCCGTGGCG CCGACCTCCGCGGCTACGGC ] [-] EMBL CB683173 [ TGCTCCGCCCCGACCTCGTCACGGCGTTCGTCGCCCTCAGCGTCGAGTACCACCCGCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGA CGG CCACTACATC TGC TTCTTCC AGAAACC TGG AGTG GCCG AAGCTGAATTTGG TAGAGGTGA TATAAAGTGT CTC TTGAAG AAATTCTAT GGAATGCGCAAGGCAGCACCTCTGATTAT ACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATG CCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACTTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA A AAAAGg ] [+] EMBL AU030353 [ GCGTCGAGTACCACCCGC GAACCCCACGAGG GCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGA CGG CCACTACATC TGC TTCTTCC AGAAACC TGG NGTG GCCG AAGCTGAATTTGG TAGAGGTGA TATAAAGTGT CTC TTGAAG AAATTCTAT GGAATGCGCAAGGCAGCACCTCTGATTAT ACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATG CCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGA GTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA ATCAAAAaa ] [+] EMBL AU030519 [ cttaggnccCCTTTTCCGGGGACCGGCCCATTACATCTTGCTTTCTTCCNAGAAACCTTGGNATTGCCCCGAAAGCTGAATTTGGGTTAGAGGTGATTATAAAGTNTCCTCTTTGAAGAAAATNCTTTGGGAATCCCCAAGNCAGCACCTCTGATTATCCCCCCCAGGCAAGACTTTATTTGACNCAATTGATTCAGATGGTACTTCCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATGCCCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATA AAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGA GTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA ATCAAAAaa ] [+] EMBL BI805802 [ ATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATAGAAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGT C AAATCTCTTGGA CCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCC AATATATTGTGAATTTCAAATCA ACCAGTTTCTGTTCA] [+] EMBL AU078114 [ CCACAAGGGTGGTCTAAAGGNATGTGTNCCAAATNTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGAGAAGCCTGATGANGTCTCCGACCATATTTGCGGGTTCTTTAGCAAGTTCTGATATGTGCAAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCATTATGCCAGTACTGATATCTTCCAAATATATTGTGAATTTCAAA A A ] consensusID : consensus_13270#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [GCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGACGGCCACTACATCTGCTTCTTCCAGAAACCTGGAGTGGCCGAAGCTGAATTTGGTAGAGGTGATATAAAGTGTCTCTTGAAGAAATTCTATGGAATGCGCAAGGCAGCACCTCTGATTATACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATGCCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATAAAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTGGAAGAATTGGTTATCATGGAGGGTGTTGCACATTTCATAAACCAGGAGAAACCAGATGAGGTGTCCGATCATATTGGCCCGCCTCCGCCACGTGCAGGCGCACCCCGCTTGCCACCTCCACCGTCCGGTGCCTCACCTCCGCCGCCGCCATGTCGCGCGCTCGCTACCA] [-] EMBL CB683585 [GCGGAACCCCACGAGGAGCCCCGTACAAACCCTCAGGGCCGTGTGCGGGGACGGCCACTACATCTGCTTCTTCCAGAAACCTGGAGTGGCCGAAGCTGAATTTGGTAGAGGTGATATAAAGTGTCTCTTGAAGAAATTCTATGGAATGCGCAAGGCAGCACCTCTGATTATACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGGTACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATGCCGAGAAATTTGAGAAGACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGACTGCACCATGGACTGGAGTTCCAATAAAAGTTCCGACAAAATTCATCGTTGGAGATCAGGACCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATGTGTGCCAAATCTGGAAGAATTGGTTATCATGGAGGGTGTTGCACATTTCATAAACCAGGAGAAACCAGATGAGGTGTCCGATCATATTGGCCCGCCTCCGCCACGTGCAGGCGCACCCCGCTTGCCACCTCCACCGTCCGGTGCCTCACCTCCGCCGCCGCCATGTCGCGCGCTCGCTACCA] consensusID : consensus_13270#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [CAAGCGGCACAGAGCGCGAGTCATGCGACCCACACCGCCCAAATCCTCGGAACGCAAAGCTCCCCGCTACTACTCTACTCTCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCAACCACCGCCGTGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGGCCGGAGACGGGCGTCGTGCTGTCGTTCACGGCTTCCGGAGCCTGGTACTCGTGCGCACAGATGCGCGCCTGCGCCGGGGTTCGCG] [+] EMBL AU078140 [CAAGCGGCACAGAGCGCGAGTCATGCGACCCACACCGCCCAAATCCTCGGAACGCAAAGCTCCCCGCTACTACTCTACTCTCCTACTAGTCGTCTACTACTCGGCCAGGTGAGGTGCCCAACCACCGCCGTGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGTGAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGGCCGGAGACGGGCGTCGTGCTGTCGTTCACGGCTTCCGGAGCCTGGTACTCGTGCGCACAGATGCGCGCCTGCGCCGGGGTTCGCG] consensusID : consensus_13270#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence [GCAAGCGGCACAGAGCGCGAGTNATGCGACCCANACCGCCCAAATNCTNGGAACGCAAAGCTCACCGCTACTACTCTAATCTCCTACTAGTCGTCTACTACTCGGNCANGTGAGGTGCCCAACCANCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGANGTTTAGGAACCGGACGGTNGAAGTGGCAANCGGGGTGCG] [+] EMBL AU065732 [GCAAGCGGCACAGAGCGCGAGTNATGCGACCCANACCGCCCAAATNCTNGGAACGCAAAGCTCACCGCTACTACTCTAATCTCCTACTAGTCGTCTACTACTCGGNCANGTGAGGTGCCCAACCANCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGANGTTTAGGAACCGGACGGTNGAAGTGGCAANCGGGGTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13270#0 GAAACCGAGCGCCAGCGCCGGCAAACGGAGAATCCCGGCGGAGATGCCGAACCCCAAGCC 60 consensus_13270#2 ------------------------------------------------------------ consensus_13270#1 ------------------------------------------------------------ consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 ACCGGCCGGTCGCGCCGGCGGAAACCACGACGGGGCTCTGCCTCTGGCCGGTTTCGCCCC 120 consensus_13270#2 ------------------------------------------------------------ consensus_13270#1 ------------------------------------------------------------ consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 GTACAACCAGATGCCTCCCCCAAACTGGCTGACACACCGATGCCGAGCGGCCGGCGCGCG 180 consensus_13270#2 ------------------------------------------------------------ consensus_13270#1 ------------------------------------------------------------ consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 CGGCTACAAAGGCAGAGCAGGCAGAGGACGGGCTGGATTTTCAAACGCTCGCCGCGGCGC 240 consensus_13270#2 ------------------------------------------------------------ consensus_13270#1 ----------------------------------CTCCTACTAGTCGTCTACTACTCGGC 26 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 GCGCCGATCGATCGATCGATCGAGGAGGAGCCC--TCTACGAGATGGCGGCGGCGGCGGT 298 consensus_13270#2 ------------------------------------------------------------ consensus_13270#1 CAGGTGAGGTGCCCAACCACCGCCGTGGTAGCGAGCGCGCGACATGGCGGCGGCGGAGGT 86 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 GCGGCACCGCGAGGTGGAGGTGGCGAGCGGGGTGCGGCTGCACGTGGCGGAGTCGGGACC 358 consensus_13270#2 ------------------------------------------------------------ consensus_13270#1 GAGGCACCGGACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGCCC 146 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 GGAGGGCGGGCCCGTGGCGCTGCTCGTGCACGGCTTCCCGGAGCTCTGGTACTCGTGGCG 418 consensus_13270#2 ------------------------------------------------------------ consensus_13270#1 GGAGGACGGGCCCGCCGTGCTGCTCGTCCACGGCTTCCCGGAGCTCTGGTACTCGTGGCG 206 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 CCACCAGATGCGCGCGCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGG 478 consensus_13270#2 ------------------------------------------------------------ consensus_13270#1 CCACCAGATGCGCGCCCTCGCCGCGCGGGGGTTCCGCGCCGTGGCGCCCGACCTCCGCGG 266 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 CTACGGCGACTCCGACGCGCCGCAGGGCAGGGACTCCTACACCGTCCTCCACCTCGTCGG 538 consensus_13270#2 ------------------------------------------------------------ consensus_13270#1 CTACGGCGACTCCGACGCCCCGCCGGGCCGGGACTCCTACACCGTGCTCCACCTCGTGGG 326 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 CGACCTCGTCGCCCTCATCGCCGACCTCGGCCGGCCCCAGGTGTTCGTCGCGGGGCACGA 598 consensus_13270#2 ------------------------------------------------------------ consensus_13270#1 CGACCTCGTCGCGCTCATCGCCGACGTCGGCCAGCCCCGGGTGTTCGTGGCGGCGCACGA 386 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 CTGGGGCGCCGTCGTGGCGTGGCAGCTGTGCCTGCTCCGGGCGGACCTGGTGACGGCGCA 658 consensus_13270#2 ------------------------------------------------------------ consensus_13270#1 CTGGGGCGCCGCCGTGGCGTGGCAACTGTGCCTGCTCCGCCCCGACCTCGTCACGGCGTT 446 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 TGTCAGCCTCAGCGTGGAGTACCAGCCGAGGCATCCCCGGATGAGCGTGCTCCAGGCCGT 718 consensus_13270#2 ---------------------------GCGGAACCCCACGAGGAGCCCCGTACAAACCCT 33 consensus_13270#1 CGTCGCCCTCAGCGTCGAGTACCACCCGCGGAACCCCACGAGGAGCCCCGTACAAACCCT 506 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 CAGGGTTCTCTGCGGGGACGATCACTACGTGTGCCGCTTCCAGAAACCCGGAGTGGCTGA 778 consensus_13270#2 CAGGGCCGTGTGCGGGGACGGCCACTACATCTGCTTCTTCCAGAAACCTGGAGTGGCCGA 93 consensus_13270#1 CAGGGCCGTGTGCGGGGACGGCCACTACATCTGCTTCTTCCAGAAACCTGGAGTGGCCGA 566 consensus_13270#3 -----------------------------------------------------CAAGCGG 7 consensus_13270#4 ----------------------------------------------------GCAAGCGG 8 * consensus_13270#0 AGCTGAATTTGCTCGACTCGATTTAAACCATCTGTTTAAAATGGTGTTTGGAATGCGCAA 838 consensus_13270#2 AGCTGAATTTGGTAGAGGTGATATAAAGTGTCTCTTGAAGAAATTCTATGGAATGCGCAA 153 consensus_13270#1 AGCTGAATTTGGTAGAGGTGATATAAAGTGTCTCTTGAAGAAATTCTATGGAATGCGCAA 626 consensus_13270#3 CACAGAGCGCGAGTCATGCGACCCACACCGCCC--------AAATCCTCGGAACGCA-AA 58 consensus_13270#4 CACAGAGCGCGAGTNATGCGACCCANACCGCCC--------AAATNCTNGGAACGCA-AA 59 * ** * * ** * * * * **** ** ** consensus_13270#0 ACCGGCAACTATTATTCTACCCCAGGACAAGACATTCTTTGATGCAATTGATTCAGATGG 898 consensus_13270#2 GGCAGCACCTCTGATTATACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGG 213 consensus_13270#1 GGCAGCACCTCTGATTATACCCCCAGGCAAGACTTTATTTGACTCAATTGATTCAGATGG 686 consensus_13270#3 GCTCCCCGCTACTACTCTACTCTCCTACTAGTCGTCTACT-ACTCGGCCAGGTGAGGTGC 117 consensus_13270#4 GCTCACCGCTACTACTCTAATCTCCTACTAGTCGTCTACT-ACTCGGNCANGTGAGGTGC 118 * ** * * ** * * ** * * * * * * ** ** consensus_13270#0 TACTTGCCCTCCATGGCTATCAGAGGAAGACATTTCCTACTACGCTGACAAATTCGGCAA 958 consensus_13270#2 TACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATGCCGAGAAATTTGAGAA 273 consensus_13270#1 TACTTGCCCTGCATGGCTGTCAGAAGAAGACATTTCCTACTATGCCGAGAAATTTGAGAA 746 consensus_13270#3 CCAACCACCGCCGTG-TAGCGAGCGCGCGACATG-------GCGGCGGCGGAGGTG-AGG 168 consensus_13270#4 CCAACCANCGCCGTGGTAGCGAGCGCGCGACATG-------GCGGCGGCGGANGTTTAGG 171 * * ** ** ***** * * * consensus_13270#0 AACAGGGTTCACAGGAGGATTCAACTACTACAGATGCATTGACCTGGATTGGGAGCTGAC 1018 consensus_13270#2 GACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGAC 333 consensus_13270#1 GACTGGATTTACTGGAGGATTGAACTACTACAGATGCATAGACTTGAACTGGGAGCTGAC 806 consensus_13270#3 CACCGG----ACGGTGGAGGTGGCAAGCGGGGTGCGCCTGCACGTGGCGGAGGCGGGGCC 224 consensus_13270#4 AACCGG----ACGGTNGAAGTGGCAANCGGGGTGCG------------------------ 203 ** ** ** * * * * * consensus_13270#0 TGCACCATGGACTGGGGCTCTGATAAATGTTCCGATAAAATTCATCGTCGGTGACCTGGA 1078 consensus_13270#2 TGCACCATGGACTGGAGTTCCAATAAAAGTTCCGACAAAATTCATCGTTGGAGATCAGGA 393 consensus_13270#1 TGCACCATGGACTGGAGTTCCAATAAAAGTTCCGACAAAATTCATCGTTGGAGATCAGGA 866 consensus_13270#3 GGAGACGGGCGTCGTGCTGTCGTTCACGGCTTCCGGAGCCTGGTACTCGTGCGCACAGAT 284 consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 TCTCACATACAACACACCAGGTGTGAAGGATTACATTCACAAGGGTGGATTCAAAGCCAA 1138 consensus_13270#2 CCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATG 453 consensus_13270#1 CCTTACGTACAACATTCCAGGTGTAAAAGATTACATCCACAAGGGTGGTCTAAAGGCATG 926 consensus_13270#3 GCGCGCCTGCGCCGGGGTTCGCG------------------------------------- 307 consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 TGTGCCGAATCTGGAGGATGTGGTTGTCCTGGAGGGAGTTGGCCACTTCATCAACCAGGA 1198 consensus_13270#2 TGTGCCAAATCTGGAAGAATTGGTTATCATGGAGGGTGTTGCACATTTCATAAACCAGGA 513 consensus_13270#1 TGTGCCAAATCTCGAAGATGTGGTTATCATGGAGGGTGTTGCCCATTTCATCAACCAGGA 986 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 GAAGCCTGATGAGGTTTCTGAACACATCTGTGAGTTCTTTAGCAAGTTTCTGATGTAAAC 1258 consensus_13270#2 GAAACCAGATGAGGTGTCCGATCATATTGGCCCG--CCTCCGCCACGTGCAGGCGCACCC 571 consensus_13270#1 GAAGCCTGATGAGGTCTCCGACCATATTTGCGGGTTCTTTAGCAA-GTTCTGATATGTGC 1045 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 GAAATCTGGTGGAGTCTAGTACATGTCTGTATGTCGACTACAGACATGAATTCCACGGT- 1317 consensus_13270#2 CGCTTGCCACCTCCACCGTCCGGTGCCT-CACCTCCGCCGCCGCCATG--TCGCGCGCTC 628 consensus_13270#1 AAAATCTCTTGGAGCCTGCTTGCTAATTGTACTGTAAAAACTAGAACCA-TTATGCCAGT 1104 consensus_13270#3 ------------------------------------------------------------ consensus_13270#4 ------------------------------------------------------------ consensus_13270#0 ACTAAAAATCTCCAAATAAAATATCATGGCCACT---------------- 1351 consensus_13270#2 GCTACCA------------------------------------------- 635 consensus_13270#1 ACTGATATCTTCCAAATATATTGTGAATTTCAAAAAAAAGAATCTGTTCA 1154 consensus_13270#3 -------------------------------------------------- consensus_13270#4 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||