cluster # 13290

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Oryza sativa
cluster # 13290 cluster # 13290 Sequences # 12 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13290#0 length = 1072 sequences # 6
consensus_13290#1 length = 642 sequences # 1

consensus_13290#2 length = 630 sequences # 2
consensus_13290#3 length = 605 sequences # 1
consensus_13290#4 length = 274 sequences # 2

consensusID : consensus_13290#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1072
fasta sequence

                              [TCCCGTGCCGATTCGGGGCTCGTCCGGAAGCTTCTAGAGCGGTAGAATCCAAAACTCCAGAGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGC-TATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATTA-CTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGCAGGTTATTCTGGGCAGGGAAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAA-GAAGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGATACTCTCCTCCTCCAAGGGGCCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCTCCTTCGCCTCGGTATGCAAGGCGCAGGATGAGGGAGAGGTCCTACTCACCAGTTGAGAGCAGATCAAGGAGCAGGAGCCCGGTCGAGGAAGGATACGGTGGTGGATCCACACGGAGAGAGAGGTCGCTCTCTGTCAGTGAATGAGGTCTAGAGCGCTACCGGTAATCTTCAACTAGTAGTCGCTATGGCTTTGCGAACCATATGTTACTGTCGTGCTGTAGTGGTATCAATAACTTGGCAAATGTTGCGTCATTACGCCTTTCCTGGAAGATCGCAAACATATTAAGTTACAACGCCGGTGAATTCTGCTCACTTTGGAGTTGTTCTTGCTTTGTGCTTATTTTGCTGTGGATTCTGTAGAAAACGTTTTGATATGGTTGCCCGGTGGATGGGGATCTGGCACGATGGTCGAACCTTG]

[+] EMBL AK073451             [TCCCGTGCCGATTCGGGGCTCGTCCGGAAGCTTCTAGAGCGGTAGAATCCAAAACTCCAGAGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGC TATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGGTCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATTA CTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGCAGGTTATTCTGGGCAGGGAAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAA GAAGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGATACTCTCCTCCTCCAAGGGGCCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCTCCTTCGCCTCGGTATGCAAGGCGCAGGATGAGGGAGAGGTCCTACTCACCAGTTGAGAGCAGATCAAGGAGCAGGAGCCCGGTCGAGGAAGGATACGGTGGTGGATCCACACGGAGAGAGAGGTCGCTCTCTGTCAGTGAATGAGGTCTAGAGCGCTACCGGTAATCTTCAACTAGTAGTCGCTATGGCTTTGCGAACCATATGTTACTGTCGTGCTGTAGTGGTATCAATAACTTGGCAAATGTTGCGTCATTACGCCTTTCCTGGAAGATCGCAAACATATTAAGTTACAACGCCGGTG                                                                                                                     ]
[+] EMBL CF311886             [TCCCGTGCCGATTC GGTCTCGTCCGGAAGCTTCTAGAGCGGTAGAATCCAAAACTCCAGAGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGCNTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATTACCTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGCAGGTTATTCTGGGCAGGGAAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAA GAAGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAGGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF310681             [  CCGTGCCGATTCGGGGCTCGTCCGGAAGCTTCTAGAGCGGTAGAATCCAAAACTCCAGAGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGC TATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATTA CTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CA753978             [                                TCTAGAGCGGTAGAATCCAAAACTCCAGAGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCNAGAAGC TATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATTA CTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACNATCCTGATGATGCTGCCGATGCANAATACTACATGGACGGGCAGGTTATTCTGGGCAGGGAAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAA GAAGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGATACTCTCCTCCTCCAAGGGGCCGCTCGCCTTACCGCAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK061338             [                                                    AACTCCAGAGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGC TATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATTA CTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGCAGGTTATTCTGGGCAGGGAAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAA GAAGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGATACTCTCCTCCTCCAAGGGGCCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCTCCTTCGCCTCGGTATGCAAGGCGCAGGATGAGGGAGAGGTCCTACTCACCAGTTGAGAGCAGATCAAGGAGCAGGAGCCCGGTCGAGGAAGGATACGGTGGTGGATCCACACGGAGAGAGAGGTCGCTCTCTGTCAGTGAATGAGGTCTAGAGCGCTACCGGTAATCTTCAACTAGTAGTCGCTATGGCTTTGCGAACCATATGTTACTGTCGTGCTGTAGTGGTATCAATAACTTGGCAAATGTTGCGTCATTACGCCTTTCCTGGAAGATCGCAAACATATTAAGTTACAACGCCGGTGAATTCTGCTCACTTTGGAGTTGTTCTTGCTTTGTGCTTATTTTGCTGTGGATTCTGTAGAAAACGTTTTGATATGGTTGCCCGGTGGATGGGGATCTGGCACGATGGTCGAACCTTG]
[-] EMBL CF311887             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGATGCAAAATACTACATGGACGGGCAGGTTATTCTGGGCAGGGAAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAANGAAGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACGGCGAAACTCTCCTCCTCCAAGGGGCCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCTCCTTCGCCTCGGTATGCAAGGCGCAGGATGAGGGAGAGGTCCTACTCACCAGTTGAGAGCAGATCAAGGAGCAGGAGCCCGGTCGAGGAAGGATACGGTGGTGGATCCACACGGAGAGAGAGGTCGCTCTCTGTCAGTGAATGAGGTCTAGAGCGCTACCGGTAATCTTCAACTAGTAGTCGCTATGGCTTTGCGAACCATATGTTACTGTCGTGCTGTAGTGGTATCAATAACTTGGCAAATGTTGCGTCATTACGCCTTTCCTGGAAGATCGCAAACATATTAAGTTACAACGCCGGTGAATTCTGCTCACTTTGGAGTTGTTCTTGCTTTGTGCaaaaaaaa                                                                         ]




>consensus_13290#0
TCCCGTGCCGATTCGGGGCTCGTCCGGAAGCTTCTAGAGCGGTAGAATCCAAAACTCCAG
AGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGA
GCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGC
CCATCACCACCTCCAAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGT
TATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGAC
TGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATAT
ATTCCAAGAGATTACTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACGAT
CCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGCAGGTTATTCTGGGCAGGGAA
GTAGCTGTTGTATTTGCAGAGGAGAACAGAAAGAAGCCTTCTGAGATGAGATCTCGCGAC
AGAATAAGTGGCAGCAGAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGATAC
TCTCCTCCTCCAAGGGGCCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCTCCTTCG
CCTCGGTATGCAAGGCGCAGGATGAGGGAGAGGTCCTACTCACCAGTTGAGAGCAGATCA
AGGAGCAGGAGCCCGGTCGAGGAAGGATACGGTGGTGGATCCACACGGAGAGAGAGGTCG
CTCTCTGTCAGTGAATGAGGTCTAGAGCGCTACCGGTAATCTTCAACTAGTAGTCGCTAT
GGCTTTGCGAACCATATGTTACTGTCGTGCTGTAGTGGTATCAATAACTTGGCAAATGTT
GCGTCATTACGCCTTTCCTGGAAGATCGCAAACATATTAAGTTACAACGCCGGTGAATTC
TGCTCACTTTGGAGTTGTTCTTGCTTTGTGCTTATTTTGCTGTGGATTCTGTAGAAAACG
TTTTGATATGGTTGCCCGGTGGATGGGGATCTGGCACGATGGTCGAACCTTG

consensusID : consensus_13290#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [CATGACTGAAGGAGTAGAAAAGAATCCAAAACTCCAGAGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGATCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATNTACTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGCAGGTTATTCTGGGCAGGGAAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAAGAAGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGATACTCTCCTCCTCCAGGGGGGCCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCTCCTTCGCC]

[+] EMBL CF315333             [CATGACTGAAGGAGTAGAAAAGAATCCAAAACTCCAGAGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGATCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATNTACTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGCAGGTTATTCTGGGCAGGGAAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAAGAAGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGATACTCTCCTCCTCCAGGGGGGCCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCTCCTTCGCC]




>consensus_13290#1
CATGACTGAAGGAGTAGAAAAGAATCCAAAACTCCAGAGGCGAACGCGATGCGACGAGAC
GAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGATCCCCTCCGTTTTGATCCGATTC
GCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGCTA
TCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCT
CCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCG
GCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATNTACTATAGCG
GTGAACCGCGTGGATTTGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATGCAA
AATACTACATGGACGGGCAGGTTATTCTGGGCAGGGAAGTAGCTGTTGTATTTGCAGAGG
AGAACAGAAAGAAGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAAGGT
CGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGATACTCTCCTCCTCCAGGGGGGCCG
CTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCTCCTTCGCC

consensusID : consensus_13290#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 630
fasta sequence

                              [ACCTGACTGGACTGAAGGAGTAGAAAGAATGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATTACTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGC-AGGTTATTC-TGGGCAGGGAAGTAGCT-GTTGTA-TTTGC-AGAGGAGAACAGAAAGAAGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGATACTCTCCTCCTCCAAGGGGCCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCTCCTTCGCCTCGGTA]

[+] EMBL CF282243             [ACCTGACTGGACTGAAGGAGTAGAAAGAATGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATTACTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGC AGGTTATTC TGGGCAGGGAAGTAGCT GTTGTA TTTGC AGAGGAGAACAGAAAGAAGCCTTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGATACTCTCCTCCTCCAAGGGGCCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCTCCTTCGCCTCGGTA]
[+] EMBL OSS14259A            [                                                ACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCAAAGACATATATATTCCAAGAGATTACTATAGCGGTGAACCG GTGGATTTGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGCAAGGTTATTCTTGGGAAGGGAAGTAGCTNTTTGTATTTTNCAAGAGGGGACAAGAAAGAAGCCTTt                                                                                                                                                   ]




>consensus_13290#2
ACCTGACTGGACTGAAGGAGTAGAAAGAATGCGATGCGACGAGACGAGACGAACCGAAGA
AGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATAT
GGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCAAGAAGCTATCGGAGAAGGGCCAG
CAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCT
AGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATT
TGGTCGTCTCAAAGACATATATATTCCAAGAGATTACTATAGCGGTGAACCGCGTGGATT
TGGATTTGTCCAGTACTACGATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGG
GCAGGTTATTCTGGGCAGGGAAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAAGAAGCC
TTCTGAGATGAGATCTCGCGACAGAATAAGTGGCAGCAGAGGTCGTTCCTATGACCAAAG
GTACTCTAGGTCACCGCGATACTCTCCTCCTCCAAGGGGCCGCTCGCCTTACCGCAGCCC
GAGCTACTCAAGGTCTCCTTCGCCTCGGTA

consensusID : consensus_13290#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [GGGCTCGTCCGGAAGCTTCTAGAGCGGTAGAATCCAAAACTCCAGAGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCNAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCANAGACATATATATTCCAAGAGATTACTATAGCGGTGAANACAAGTTTGTGAAGACACAAGTCTTTAGTGATTCAAGTCTGTTGAAGAGAAGGGAAGAGACTGAGAGTTGCAAGTTAAGAGATGTGCAACATAAATATTACAGATGAAGAGAAGAAATGTAATTACGGGTTTAAGAGATAGTTCAAAGTCATGAAGTGTTTGAAGTCTATATTTATAATCTGACAGGTGGCAGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACNATCC]

[+] EMBL CA758806             [GGGCTCGTCCGGAAGCTTCTAGAGCGGTAGAATCCAAAACTCCAGAGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCNAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATTTGGTCGTCTCANAGACATATATATTCCAAGAGATTACTATAGCGGTGAANACAAGTTTGTGAAGACACAAGTCTTTAGTGATTCAAGTCTGTTGAAGAGAAGGGAAGAGACTGAGAGTTGCAAGTTAAGAGATGTGCAACATAAATATTACAGATGAAGAGAAGAAATGTAATTACGGGTTTAAGAGATAGTTCAAAGTCATGAAGTGTTTGAAGTCTATATTTATAATCTGACAGGTGGCAGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACNATCC]




>consensus_13290#3
GGGCTCGTCCGGAAGCTTCTAGAGCGGTAGAATCCAAAACTCCAGAGGCGAACGCGATGC
GACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGAGCCCCTCCGTTTTGA
TCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGCCCATCACCACCTCCN
AGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGTTATGGTGGACGTGGT
AGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGACTGCCGGCCAGAGGAC
CTTCGTCGGCCATTCGGACAATTTGGTCGTCTCANAGACATATATATTCCAAGAGATTAC
TATAGCGGTGAANACAAGTTTGTGAAGACACAAGTCTTTAGTGATTCAAGTCTGTTGAAG
AGAAGGGAAGAGACTGAGAGTTGCAAGTTAAGAGATGTGCAACATAAATATTACAGATGA
AGAGAAGAAATGTAATTACGGGTTTAAGAGATAGTTCAAAGTCATGAAGTGTTTGAAGTC
TATATTTATAATCTGACAGGTGGCAGTGAACCGCGTGGATTTGGATTTGTCCAGTACTAC
NATCC

consensusID : consensus_13290#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 274
fasta sequence

                              [CTCCCCAGCATAAAGATCAAGGGAGCAGNAGCCCGGGTCGAGNAAGGATACGGTGGTGGATCCACACGGAGAGAGAGGTCGCTCTCTGTCAGTGAATGAGGTCTAGAGCTACCGGTAATCTTCAACTTGTAGTCGCTATGNCTTTGCGAACCATATGTTACTGTCGTGCTGTAGTGGTATCAATAACTTGGCAAATGTTGTGTCATTACGCCTTTCCTGGAAGATTGCAAACATATTAAGTTACAACGCCGGTGAATTCTGCTCNCTTTGGAGT]

[-] EMBL D43571               [CTCCCCAGCATAAAGATCAAGGGAGCAGNAGCCCGGGTCGAGNAAGGATACGGTGGTGGATCCACACGGAGAGAGAGGTCGCTCTCTGTCAGTGAATGAGGTCTAGAGCTACCGGTAATCTTCAACTTGTAGTCGCTATGNCTTTGCGAACCATATGTTACTGTCGTGCTGTAGTGGTATCAATAACTTGGCAAATGTTGTGTCATTACGCCTTTCCTGGAAGATTGCAAACATATTAAGTTACAACGCCGGTGAATTCTGCTCNCTTTGGAGT]
[-] EMBL D43395               [                                                                                 CTCTCTGTCAGTGAATGAGGTCTAGAGCTANCGGTAATCNTCNACTTGTAGTCGCTATGGCTTTGCGAACCATATGTTACTGTCGTGCTGTAGTGGTATCAATNACTTGGCNAATGTTGTGTCATTACGCCTTTCCTGGAAGATTGCAAACNTATTAAGTTACAACGCCGGTGAANTCTGCTCACTTTGGAGT]




>consensus_13290#4
CTCCCCAGCATAAAGATCAAGGGAGCAGNAGCCCGGGTCGAGNAAGGATACGGTGGTGGA
TCCACACGGAGAGAGAGGTCGCTCTCTGTCAGTGAATGAGGTCTAGAGCTACCGGTAATC
TTCAACTTGTAGTCGCTATGNCTTTGCGAACCATATGTTACTGTCGTGCTGTAGTGGTAT
CAATAACTTGGCAAATGTTGTGTCATTACGCCTTTCCTGGAAGATTGCAAACATATTAAG
TTACAACGCCGGTGAATTCTGCTCNCTTTGGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13290#1      -----------------------CATGACTGAAGGAGTAGAAAAGAATCCAAAACTCCAG 37
consensus_13290#2      -----------------------------------ACCTGACTGGACTGAAGGAGTAGAA 25
consensus_13290#3      ---------------GGGCTCGTCCGGAAGCTTCTAGAGCGGTAGAATCCAAAACTCCAG 45
consensus_13290#0      TCCCGTGCCGATTCGGGGCTCGTCCGGAAGCTTCTAGAGCGGTAGAATCCAAAACTCCAG 60
consensus_13290#4      ------------------------------------------------------CTCCCC 6
                                                                              *    

consensus_13290#1      AGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGA 97
consensus_13290#2      AG---AATGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGA 82
consensus_13290#3      AGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGA 105
consensus_13290#0      AGGCGAACGCGATGCGACGAGACGAGACGAACCGAAGAAGCATTCCCTCCCTCCGCTCGA 120
consensus_13290#4      AGCATAAAGATCAAGGGAGCAGNAGCCCGGGTCGAGNAAGGATACGGT------GGTGGA 60
                       **   ** *      *  *        **   ***  *** ** *  *      * * **

consensus_13290#1      TCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGC 157
consensus_13290#2      GCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGC 142
consensus_13290#3      GCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGC 165
consensus_13290#0      GCCCCTCCGTTTTGATCCGATTCGCTCGCGATTGATATGGGGAGAGGCTACAGTTACAGC 180
consensus_13290#4      TCCACACGGA---GAGAGAGGTCGCTCTCTGTCAGT--GAATGAGGTCTAGAGCTACCGG 115
                        ** * * *    **      ****** *  *   *  *      * *** ** *** * 

consensus_13290#1      CCATCACCACCTCCAAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGT 217
consensus_13290#2      CCATCACCACCTCCAAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGT 202
consensus_13290#3      CCATCACCACCTCCNAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGT 225
consensus_13290#0      CCATCACCACCTCCAAGAAGCTATCGGAGAAGGGCCAGCAGCCCAATTCCCCGTGACCGT 240
consensus_13290#4      TAATCTTCAACTTGTAGTCGCTAT-------GNCTTTGCGAACCATAT----GTTACTGT 164
                         ***  ** **   **  *****       *     **   ***  *    ** ** **

consensus_13290#1      TATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGAC 277
consensus_13290#2      TATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGAC 262
consensus_13290#3      TATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGAC 285
consensus_13290#0      TATGGTGGACGTGGTAGAGATCTCCCGACCAGTCTTCTAGTCAGGAATCTTCGTCGGGAC 300
consensus_13290#4      CGTGCTGTA-GTGGTATCAATAACTTGGCAAATGTTGT-GTCATTACGCCTTTCCTGGAA 222
                         ** ** * ******   **  *  * * * * ** * ****  *  * *   * *** 

consensus_13290#1      TGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATT-TGGTCGTCTCAAAGACATATA 336
consensus_13290#2      TGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATT-TGGTCGTCTCAAAGACATATA 321
consensus_13290#3      TGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATT-TGGTCGTCTCANAGACATATA 344
consensus_13290#0      TGCCGGCCAGAGGACCTTCGTCGGCCATTCGGACAATT-TGGTCGTCTCAAAGACATATA 359
consensus_13290#4      GATTG--CAAACATATTAAGTTACAACGCCGGTGAATTCTGCTCNCTTTGGAGT------ 274
                           *  ** *     *  **        ***  **** ** **   *   **       

consensus_13290#1      TATTCCAAGAGATNTACTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACG 396
consensus_13290#2      TATTCCAAGAGATT-ACTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACG 380
consensus_13290#3      TATTCCAAGAGATT-ACTATAGCGGTGAAN-ACAAGTTTGTGAAGACACAAGTCTTTAGT 402
consensus_13290#0      TATTCCAAGAGATT-ACTATAGCGGTGAACCGCGTGGATTTGGATTTGTCCAGTACTACG 418
consensus_13290#4      ------------------------------------------------------------
                                                                                   

consensus_13290#1      ATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGCAGGTTATTCTGGGCAGGG 456
consensus_13290#2      ATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGCAGGTTATTCTGGGCAGGG 440
consensus_13290#3      GATTCAAGTCTGTTGAAGAGAAGGGAAGAGACTGAGAGTTGCAAGTTAAGAGATGT-GCA 461
consensus_13290#0      ATCCTGATGATGCTGCCGATGCAAAATACTACATGGACGGGCAGGTTATTCTGGGCAGGG 478
consensus_13290#4      ------------------------------------------------------------
                                                                                   

consensus_13290#1      AAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAAGAAGCCTTCTGAGATGAGATCTCGCG 516
consensus_13290#2      AAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAAGAAGCCTTCTGAGATGAGATCTCGCG 500
consensus_13290#3      ACATAAATATTACAGATGAAGAGAAGAAATGTAATTACGGGTTTAAGA-GATAGTTCA-- 518
consensus_13290#0      AAGTAGCTGTTGTATTTGCAGAGGAGAACAGAAAGAAGCCTTCTGAGATGAGATCTCGCG 538
consensus_13290#4      ------------------------------------------------------------
                                                                                   

consensus_13290#1      ACAGAATAAGTGGCAGCAGAAGGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGA 576
consensus_13290#2      ACAGAATAAGTGGCAGCAGA-GGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGA 559
consensus_13290#3      --AAGTCATGAAGTGTTTGAAGTCTATATTTATAATCTGACAGGTGGCAGTGAACCGCGT 576
consensus_13290#0      ACAGAATAAGTGGCAGCAGA-GGTCGTTCCTATGACCAAAGGTACTCTAGGTCACCGCGA 597
consensus_13290#4      ------------------------------------------------------------
                                                                                   

consensus_13290#1      TACTCTC--CTCCTCCAGGGGGGCCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCT 634
consensus_13290#2      TACTCTC--CTCCTCCAAGGGG-CCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCT 616
consensus_13290#3      GGATTTGGATTTGTCCAGTACTACNATCC------------------------------- 605
consensus_13290#0      TACTCTC--CTCCTCCAAGGGG-CCGCTCGCCTTACCGCAGCCCGAGCTACTCAAGGTCT 654
consensus_13290#4      ------------------------------------------------------------
                                                                                   

consensus_13290#1      CCTTCGCC---------------------------------------------------- 642
consensus_13290#2      CCTTCGCCTCGGTA---------------------------------------------- 630
consensus_13290#3      ------------------------------------------------------------
consensus_13290#0      CCTTCGCCTCGGTATGCAAGGCGCAGGATGAGGGAGAGGTCCTACTCACCAGTTGAGAGC 714
consensus_13290#4      ------------------------------------------------------------
                                                                                   

consensus_13290#1      ------------------------------------------------------------
consensus_13290#2      ------------------------------------------------------------
consensus_13290#3      ------------------------------------------------------------
consensus_13290#0      AGATCAAGGAGCAGGAGCCCGGTCGAGGAAGGATACGGTGGTGGATCCACACGGAGAGAG 774
consensus_13290#4      ------------------------------------------------------------
                                                                                   

consensus_13290#1      ------------------------------------------------------------
consensus_13290#2      ------------------------------------------------------------
consensus_13290#3      ------------------------------------------------------------
consensus_13290#0      AGGTCGCTCTCTGTCAGTGAATGAGGTCTAGAGCGCTACCGGTAATCTTCAACTAGTAGT 834
consensus_13290#4      ------------------------------------------------------------
                                                                                   

consensus_13290#1      ------------------------------------------------------------
consensus_13290#2      ------------------------------------------------------------
consensus_13290#3      ------------------------------------------------------------
consensus_13290#0      CGCTATGGCTTTGCGAACCATATGTTACTGTCGTGCTGTAGTGGTATCAATAACTTGGCA 894
consensus_13290#4      ------------------------------------------------------------
                                                                                   

consensus_13290#1      ------------------------------------------------------------
consensus_13290#2      ------------------------------------------------------------
consensus_13290#3      ------------------------------------------------------------
consensus_13290#0      AATGTTGCGTCATTACGCCTTTCCTGGAAGATCGCAAACATATTAAGTTACAACGCCGGT 954
consensus_13290#4      ------------------------------------------------------------
                                                                                   

consensus_13290#1      ------------------------------------------------------------
consensus_13290#2      ------------------------------------------------------------
consensus_13290#3      ------------------------------------------------------------
consensus_13290#0      GAATTCTGCTCACTTTGGAGTTGTTCTTGCTTTGTGCTTATTTTGCTGTGGATTCTGTAG 1014
consensus_13290#4      ------------------------------------------------------------
                                                                                   

consensus_13290#1      ----------------------------------------------------------
consensus_13290#2      ----------------------------------------------------------
consensus_13290#3      ----------------------------------------------------------
consensus_13290#0      AAAACGTTTTGATATGGTTGCCCGGTGGATGGGGATCTGGCACGATGGTCGAACCTTG 1072
consensus_13290#4      ----------------------------------------------------------