These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13297#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 850 fasta sequence [CAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTGAGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTTTCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGGTAAGGAACTTACGGGCTTCTTATACTTCTTTTGTTCCGTTGATATGGTAGTGCCAATGGATTCACGCACTTGTTGCTTTTTTTATGGGTAGGGTTAGATCTGTCGGATTATTGCAGTAGTCTTTGCATGGTCATACATTCGGTGGCCATTCATTAGGGAGTATTACTTACCATGATGTCCATGATGTACACTTGATCTTTTAGTTTCTTAAACTTAAATTAATTTTTGAATCAAGTTATATCGCGAACTTTGCGCTTTCCAAATTCCAATAGTTCATTTTTTGTTCAGTTATCAAGTCCACATTGTTTGTTCACTATTTTGAATATTTTTTATCCTGTAAATATGCTGAAATTGAATGTTGACATAGATTGCTGCTGTTTTCAATGAATATATATATGCAGTTATGCACTGCCATCCCATTTCCCTCTGTTCAACCTTGTATGTGATTACTACCAACCTTGTATATGTCTACTGCATATGTTTAATAGCCATCCTGTGTATCTTA] [+] EMBL CB674530 [CAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTGAGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTTTCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGGTAAGGAACTTACGGGCTTCTTATACTTCTTTTGTTCCGTTGATATGGTAGTGCCAATGGATTCACGCACTTGTTGCTTTTTTTATGGGTAGGGTTAGATCTGTCGGATTATTGCAGTAGTCTTTGCATGGTCATACATTCGGTGGCCATTCATTAGGGAGTATTACTTACCATGATGTCCATGATGTACACTTGATCTTTTAGTTTCTTAAACTTAAATTAATTTTTGAATCAAGTTATATCGCGAACTTTGCGCTTTCCAAATTCCAATAGTTCATTTTTTGTTCAGTTATCAAGTCCACATTGTTTGTTCACTATTTTGAATATTTTTTATCCTGTAAATATGCTGAAATTGAATGTTGACATAGATTGCTGCTGTTTTCAATGAATATATATATGCAGTTATGCACTGCCATCCCATTTCCCTCTGTTCAACCTTGTATGTGATTACTACCAACCTTGTATATGTCTACTGCATATGTTTAATAGCCATCCTGTGTATCTTA] consensusID : consensus_13297#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 836 fasta sequence [AGTTTTTTTTTTTTTTTTTTTTTTTTGCAGAAGACCACTACTACTAAAAATTTGAAAGCCTTAAAAATACGAACAGCACAATAGATCAATTTGGGCTAAGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACATAGAGAGGCGTAGTTCCCGACAAAGAAAAGCAGCAGGGAAGGTCGCGACCACAATCAGGACTATATTTCCAGGGTTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGACCAGAAAACAAATCTATCAAGCACTATGCATGACAAAAGGGCACTGCAATTTAAATGTATGTGACTTCTTTATCGAAAAAAACTATGAGGCTTGCAGGGTTAGAAAAAATTAACCCTTCCCTAGGAGTATATGTTACAAGTTACTAGACCCCTAGAGCCAGAGCAAAGATATCTGTGGACATGGATGAGTCTGCCAATATTGCCTTGATAGATCTCCATCACAGATAATTCAAAGCTAAATACAATAATTTGTCTGTATAGCACCCCTTCTGTAATTTTTGAAAGTTGGACCCCCCCCAAAATAAGCTATTACTAGGATTGCTTCTTCAACATTACAAC] [+] EMBL CA758230 [AGTTTTTTTTTTTTTTTTTTTTTTTTGCAGAAGACCACTACTACTAAAAATTTGAAAGCCTTAAAAATACGAACAGCACAATAGATCAATTTGGGCTAAGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACATAGAGAGGCGTAGTTCCCGACAAAGAAAAGCAGCAGGGAAGGTCGCGACCACAATCAGGACTATATTTCCAGGGTTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGACCAGAAAACAAATCTATCAAGCACTATGCATGACAAAAGGGCACTGCAATTTAAATGTATGTGACTTCTTTATCGAAAAAAACTATGAGGCTTGCAGGGTTAGAAAAAATTAACCCTTCCCTAGGAGTATATGTTACAAGTTACTAGACCCCTAGAGCCAGAGCAAAGATATCTGTGGACATGGATGAGTCTGCCAATATTGCCTTGATAGATCTCCATCACAGATAATTCAAAGCTAAATACAATAATTTGTCTGTATAGCACCCCTTCTGTAATTTTTGAAAGTTGGACCCCCCCCAAAATAAGCTATTACTAGGATTGCTTCTTCAACATTACAAC] [-] EMBL OSS15210A [ AGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCG ] consensusID : consensus_13297#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [TCTTTTTTTTAATACGAACAGCACAATAGATCAATTTGGGCTAAGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACATAGAGAGCGTAGTTCCCGACAAAGAAAAGCAGCAGGAAGGTCGCGACCACAATCAGGACTATCATTCCAGGGTTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGACCAGAAAACAAATCTATCAAGCACTATGCATGACAAAAGGGCACTGCAATTTAAATGTATGTGACTTCTTTATCGAAAAAATACTATGAGGCTTGCAGGGTTAGAAGAAGTTAACCCTTCCATAGGAGTATATGTTACAAGTTACTAGACACATAGAGCCAGAGCAGAGATATCTGTGGACATGGATGAGTCTGCACATATTGCCATGTATAGATCTCCATACACAGATAATTCGAAAGCTAGATAACAATTATTTGTACTGTATAGTCACCCACATCTGTAGTTCTGTACAGTTTGATCACAGCACAAAATAAAGCTTATTACTAAGGATTGCATGTTTTCAACACTAGCAAC] [+] EMBL CB674531 [TCTTTTTTTTAATACGAACAGCACAATAGATCAATTTGGGCTAAGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGCTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACATAGAGAGCGTAGTTCCCGACAAAGAAAAGCAGCAGGAAGGTCGCGACCACAATCAGGACTATCATTCCAGGGTTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGACCAGAAAACAAATCTATCAAGCACTATGCATGACAAAAGGGCACTGCAATTTAAATGTATGTGACTTCTTTATCGAAAAAATACTATGAGGCTTGCAGGGTTAGAAGAAGTTAACCCTTCCATAGGAGTATATGTTACAAGTTACTAGACACATAGAGCCAGAGCAGAGATATCTGTGGACATGGATGAGTCTGCACATATTGCCATGTATAGATCTCCATACACAGATAATTCGAAAGCTAGATAACAATTATTTGTACTGTATAGTCACCCACATCTGTAGTTCTGTACAGTTTGATCACAGCACAAAATAAAGCTTATTACTAAGGATTGCATGTTTTCAACACTAGCAAC] consensusID : consensus_13297#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence [TCGAATCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTGAGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTTTCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAAAAAAA] [+] EMBL AK121205 [TCGAATCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTGAGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTTTCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGA ] [-] EMBL CF281908 [ TCAGAAGACGTTTCCTCCTCGC AAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTTTTTGCCCCAGGAGAGTGAAGAGAGCCCCCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTTTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGACCCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAAAAAAA] consensusID : consensus_13297#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 769 fasta sequence [TCGAATCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCA-GGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTTTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGAACCTTAGCCCAAATTGATCTATTGTGCTGTTCGTATTTTTAAGGCTTTCAA-----ATTTTTAGTAGTAGTGGTCTTCTGCAAAAAAAAAAAAAGAAAAAAAAA] [+] EMBL CF281890 [TCGAATCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCA GGAGAGTG ] [-] EMBL CF281891 [ AGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCA GGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTTTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGAACCTTAGCCCAAATTGATCTATTGTGCTGTTCGTATTTTTAAGGCTTTCAA ATTTTTAGTAGTAGTGGTCTTCTGCAAAAAAAAAAAAAGAAAAAAAAA] [+] EMBL BI798809 [ GTCACCCAT GCGGATCAGTTC CGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGT GTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGC AAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCACGGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAACTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCCAACGGTTGAACCTTAGCCC AATTGATCTATTGTGCTGTTCGTATTTTTAAGGCTTTCAAACTGCATTTCTAGTAGTAGTGGTCTTCTGCCAAAAAAAAAA ] consensusID : consensus_13297#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 688 fasta sequence [CTGAAGGAGTAGAAACTCCTTTTTCGAATCCTCGTCCTGCCGTCTTTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACATTTTTTTAGTGCAGCAGCTGCCGTATGCTAAATAAAATATCT-AAAAATGAGAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGGGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAA] [+] EMBL CF279075 [CTGAAGGAGTAGAAACTCCTTTTTCGAATCCTCGTCCTGCCGTCTTTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACATTTTTTTAGTGCAGCAGCTGCCGTATGCTAAATAAAATATCT AAAAATGAGAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGGGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTT ] [-] EMBL CF279074 [ GGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGGGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGACGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAGTTACTATGTTCTGTATAAGCTTTATATAGTGATTCTCCGTTATTGGACAACTTATTTCAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAA] consensusID : consensus_13297#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [NGAATCGGCTGGGNCGANTNCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGTAACATAAAATATCTAAAAAAGGAGAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGNACCCTGGAATGATAGTCCTGATTTTGGTCCGGGACCTTCCTGCTTNTTTTCTTTGTCGGGGACTACGGTCTCTATGTGTACGNTCAGAAGCGGTTTCCTCCTCGGAAAAAGAGGCAGTTTCGAGAAGAAGTTAAGN] [+] EMBL OSS4662A [NGAATCGGCTGGGNCGANTNCCTCGTCCTGCCGTCTCTCAGAACTCCCCCAAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCTTAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGAATAGTGCAGCAGCTGCCGTAGTAACATAAAATATCTAAAAAAGGAGAGAGTTGCAGGTGTTTGGTCCCGGTCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGNACCCTGGAATGATAGTCCTGATTTTGGTCCGGGACCTTCCTGCTTNTTTTCTTTGTCGGGGACTACGGTCTCTATGTGTACGNTCAGAAGCGGTTTCCTCCTCGGAAAAAGAGGCAGTTTCGAGAAGAAGTTAAGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13297#4 -----------------------TCGAATCC-TCGTCCTGCCGTCTCTCAGAACTCCCCC 36 consensus_13297#5 CTGAAGGAGTAGAAACTCCTTTTTCGAATCC-TCGTCCTGCCGTCTTTCAGAACTCCCCC 59 consensus_13297#6 ----------NGAATCGGCTGGGNCGANTNCCTCGTCCTGCCGTCTCTCAGAACTCCCCC 50 consensus_13297#3 -----------------------TCGAATCC-TCGTCCTGCCGTCTCTCAGAACTCCCCC 36 consensus_13297#0 ------------------------------------------------CAGAACTCCCCC 12 consensus_13297#1 ----------------AGTTTTTTTTTTTTTTTTTTTTTTTTGCAGAAGACCACTACTAC 44 consensus_13297#2 ------------------------------------------------------------ consensus_13297#4 AAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCT 96 consensus_13297#5 AAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCT 119 consensus_13297#6 AAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCT 110 consensus_13297#3 AAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCT 96 consensus_13297#0 AAAAATTTCAGTAGTATTCCTCACTCGCACCTTCCAATCCTATCAGATCATCGAACTCCT 72 consensus_13297#1 TAAAAATTTGAAAGCCTTAAAAATACGAACAGCACAATAG-ATCAATTTGGGCTAAGGTT 103 consensus_13297#2 -----------TCTTTTTTTTAATACGAACAGCACAATAG-ATCAATTTGGGCTAAGGTT 48 ** * ** ** **** **** * * * consensus_13297#4 TAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGA 156 consensus_13297#5 TAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACATTTTT 179 consensus_13297#6 TAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGA 170 consensus_13297#3 TAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGA 156 consensus_13297#0 TAACCGAATCCCGTAAGCGGGAGGGCGAGACCCGACGATCGATCGGCCACGAACAGCGGA 132 consensus_13297#1 CAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCA-----CTATATAAAGCTTA 158 consensus_13297#2 CAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCA-----CTATATAAAGCTTA 103 ***** * * * ** * * * * * * ** *** * * * * consensus_13297#4 -ATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAG---------- 205 consensus_13297#5 -TTAGTGCAGCAGCTGCCGTATGCTAAATAAAATATCTAAAAATGAG------------- 225 consensus_13297#6 -ATAGTGCAGCAGCTGCCGTA-GTAACATAAAATATCTAAAAAAGGAG------------ 216 consensus_13297#3 -ATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTG 215 consensus_13297#0 -ATAGTGCAGCAGCTGCCGTAGGCTAAATAAAATATCTAAAAAAGGAGAGGTAGGGATTG 191 consensus_13297#1 TACAGAACA-TAGTAACTGTAAGC--ACTGCGGTTCCAGCTGATATATATCCTGTTTTCT 215 consensus_13297#2 TACAGAACA-TAGTAACTGTAAGC--ACTGCGGTTCCAGCTGATATATATCCTGTTTTCT 160 ** ** ** * *** * * * * * consensus_13297#4 ------------------------------------------------------------ consensus_13297#5 ------------------------------------------------------------ consensus_13297#6 ------------------------------------------------------------ consensus_13297#3 AGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTT 275 consensus_13297#0 AGGTTTGGTGGAGATTGATACAACCCCTTCTCGATTAAGAATTGCTCCTCTTTTTCTTTT 251 consensus_13297#1 AACAAGCGAAGAGGGTCGTCTGA------ATCAAATCAGCAACATCATAACTGGTGGCTC 269 consensus_13297#2 AACAAGCGAAGAGGGTCGTCTGA------ATCAAATCAGCAACATCATAACTGGTGGCTC 214 consensus_13297#4 --------------AGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGG 251 consensus_13297#5 ------------------------------------AGAGTTGCAGGTGTTTGGTCCCGG 249 consensus_13297#6 ------------------------------------AGAGTTGCAGGTGTTTGGTCCCGG 240 consensus_13297#3 TCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGG 335 consensus_13297#0 TCTTTTTTCGCCAGAGTTTGATCCATCGTTGGATCCAGAGTTGCAGGTGTTTGGTCCCGG 311 consensus_13297#1 TCTTCACTCTCCTGGGGCAGA----------GACACCTTGCTTCAGTTTTTCCCTCTTCA 319 consensus_13297#2 TCTTCACTCTCCTGGGGCAGA----------GACACCTTGCTTCAGTTTTTCCCTCTTCA 264 * * *** * ** ** consensus_13297#4 TCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAAC 311 consensus_13297#5 TCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAAC 309 consensus_13297#6 TCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAAC 300 consensus_13297#3 TCAGCCATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAAC 395 consensus_13297#0 TCAGCCATGGCGGATCAGTTCGCGGACTCTGCGG-TAAGGAACTTACGGGCTTCTTATAC 370 consensus_13297#1 TCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACAT 379 consensus_13297#2 TCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACAT 324 ** * ** * * * * * * * * * * consensus_13297#4 AAGGGA---CTGAACCCTGGAATGATAGTCCTGATTGTGGTC-GCGACCTTCCTGCTGCT 367 consensus_13297#5 AAGGGA---CTGAACCCTGGAATGATAGTCCTGATTGTGGTC-GCGACCTTCCTGCTGCT 365 consensus_13297#6 AAGGGA---CTGNACCCTGGAATGATAGTCCTGATTTTGGTCCGGGACCTTCCTGCTTNT 357 consensus_13297#3 AAGGGA---CTGAACCCTGGAATGATAGTCCTGATTGTGGTC-GCGACCTTCCTGCTGCT 451 consensus_13297#0 TTCTTT---TGTTCCGTTGATATGGTAGTGCCAATG--GATTCACGCACTTGTTGCTTTT 425 consensus_13297#1 AGAGAGGCGTAGTTCCCGACAAAGAAAAGCAGCAGGGAAGGTCGCGACCACAATCAGGAC 439 consensus_13297#2 AGAGAG-CGTAGTTCCCGACAAAGAAAAGCAGCAGG-AAGGTCGCGACCACAATCAGGAC 382 * * * * * * * * consensus_13297#4 TTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAA 427 consensus_13297#5 TTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAA 425 consensus_13297#6 TTTCTTTGTCGGGGACTACGGTCTCTATGTGTACGNTCAGAAGCGGTTTCCTCCTCGGAA 417 consensus_13297#3 TTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAA 511 consensus_13297#0 TTTATGGGTAGGG---TTAGATCTGTCGGATTAT-TGCAGTAGTCTTTGCATGGTCATAC 481 consensus_13297#1 TATATTTCCAGGG--TTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGA 497 consensus_13297#2 TATCATTCCAGGG--TTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGA 440 * * *** * * * * ** * * consensus_13297#4 AA--AGAAGCCAGTCTCGAAGAAGAA------GATGAAGAGGGAAAAACTGAAGCAAGGT 479 consensus_13297#5 AA--AGAAGCCAGTCTCGAAGAAGAA------GATGAAGAGGGAAAAACTGAAGCAAGGT 477 consensus_13297#6 AA--AGAGGC-AGTTTCGA-GAAGAA------GTTAAGN--------------------- 446 consensus_13297#3 AA--AGAAGCCAGTCTCGAAGAAGAA------GATGAAGAGGGAAAAACTGAAGCAAGGT 563 consensus_13297#0 ATTCGGTGGCCATTCATTAGGGAGTATTACTTACCATGATGTCCATGATGTACACTTGAT 541 consensus_13297#1 CCAGAAAACAAATCTATCAAGCACTATG----CATGACAAAAGGGCACTGCAATTTAAAT 553 consensus_13297#2 CCAGAAAACAAATCTATCAAGCACTATG----CATGACAAAAGGGCACTGCAATTTAAAT 496 * * * * * consensus_13297#4 GTCTCTGCCCCAGGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGA 539 consensus_13297#5 GTCTCTGCCCCAGGAGGGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGA 537 consensus_13297#6 ------------------------------------------------------------ consensus_13297#3 GTCTCTGCCCCAGGAGAGTGAAGAGAGCCACCAGTTATGATGTTGCTGATTTGATTCAGA 623 consensus_13297#0 CTTTTAGTTTCTTAAACTTAAATTAATTTTTGAATCAAGTTATATCGCGAACTTTGCGCT 601 consensus_13297#1 GTATGTGACTTCTTTATCGAAAAAA-ACTATGAGGCTTGCAGGGTTAGAAAAAATTAACC 612 consensus_13297#2 GTATGTGACTTCTTTATCGAAAAAATACTATGAGGCTTGCAGGGTTAGAAGAAGTTAACC 556 consensus_13297#4 CGACCCTTTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAG 599 consensus_13297#5 CGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAG 597 consensus_13297#6 ------------------------------------------------------------ consensus_13297#3 CGACCCTCTTCGCTTGTTAGAAAACAGGATATATATCAGCTGGAACCGCAGTGCTTACAG 683 consensus_13297#0 TTCCAAATTCCAATAGTTCATTTTTTGTTCAGTTATCAAGTCCACATTGTTTGTTCACTA 661 consensus_13297#1 CTTCCCTAGGAGTATAT---GTTACAAGTTACTAGACCCCTAGAGCCAGAGCAAAGATAT 669 consensus_13297#2 CTTCCATAGGAGTATAT---GTTACAAGTTACTAGACACATAGAGCCAGAGCAGAGATAT 613 consensus_13297#4 TTACTA-TGTTCTGTATAAGCTTTATATAGTGATT-CTCCGTTATTGGACA-ACTTATTT 656 consensus_13297#5 TTACTA-TGTTCTGTATAAGCTTTATATAGTGATT-CTCCGTTATTGGACA-ACTTATTT 654 consensus_13297#6 ------------------------------------------------------------ consensus_13297#3 TTACTA-TGTTCTGTATAAGCTTTATATAGTGATT-CTCCGTTATTGGACA-ACTTATTT 740 consensus_13297#0 TTTTGAATATTTTTTATCCTGTAAATATGCTGAAA-TTGAATGTTGACATA-GATTGCTG 719 consensus_13297#1 CTGTGGACATGGATGAGTCTGCCAATATTGCCTTG-ATAGATCTCCAT-CACAGATAATT 727 consensus_13297#2 CTGTGGACATGGATGAGTCTGCACATATTGCCATGTATAGATCTCCATACACAGATAATT 673 consensus_13297#4 CAGCAAACGGTTGAACCTTAGCCCAAATTGATCTATTGTGCTGTTCGTATTTTTAAGGCT 716 consensus_13297#5 CAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAA-------------------------- 688 consensus_13297#6 ------------------------------------------------------------ consensus_13297#3 CAGCAAACGGTTGACCCTTAGCCCAAAAAAAAAAAAAAA--------------------- 779 consensus_13297#0 CTGTTTTCAATGAATATATATATGCAGTTATGCACTGCCATCCCATTTCCCTCTGTTCAA 779 consensus_13297#1 C-AAAGCTAAATA-CAATAATTTGT-CTGTATAG-CACCC-CTTCTGTAATTTTTGAAAG 782 consensus_13297#2 CGAAAGCTAGATAACAATTATTTGTACTGTATAGTCACCCACATCTGTAGTTCTGTACAG 733 consensus_13297#4 TTCAAATTTTTAGTAGTAGTGGTCTTCTGCAAAAAAAAAAAAAGAAAAAAAAA------- 769 consensus_13297#5 ------------------------------------------------------------ consensus_13297#6 ------------------------------------------------------------ consensus_13297#3 ------------------------------------------------------------ consensus_13297#0 CCTTGTATGTGATTACTACCAACCTTGTATATGTCTACTGCATATGTTTAATAGCCATCC 839 consensus_13297#1 TTGGACCCCCCC-CAAAATAAG--CTATTACTA-GGATTGCTT--CTTCAACATTA-CAA 835 consensus_13297#2 TTTGATCACAGCACAAAATAAAGCTTATTACTAAGGATTGCATGTTTTCAACACTAGCAA 793 consensus_13297#4 ----------- consensus_13297#5 ----------- consensus_13297#6 ----------- consensus_13297#3 ----------- consensus_13297#0 TGTGTATCTTA 850 consensus_13297#1 C---------- 836 consensus_13297#2 C---------- 794 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||