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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1436 fasta sequence
[AACAAAACCACCGGTACACCGCCCCGGCGCGGCGCGCGGAGACGTGTCCCGATCCAACTCACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATCCGCCCTAGCACGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCAGATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCTGAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGC-TCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTTCTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTCGTCCTCCAGTCCGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACG-TCGTGAAGCCGAGGCTGGAGAACACCA-TCA-GCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGG-AACAGCTTG-CGGA-GGAGGTTGCCCTCAAGAGGGGTATCTCT-GTGGGTGCTGCCA-CCAACATGTTGGTTG-CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC-ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT-GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCA-AAAGACC-ACAAATAATTTGTACT-TGGAACC-AACCAACGGATGGATTGTTTATGTGC-AGTTTTCGTAGTTAATTCAA-TTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGC-TATATATTTGTTTGGAAAGGTGTTCGTTGATTGGGGTTTCGCAAACTGAAGCTGCAGACTCGAAGTGTATTTCGATCTGGTTGAGTAATTCTGTACTCTGTACTGTAGCAGCACACTTTTCGTTCTGAATTGTCGTGGATGGGAAAAGAATAATTAAGCTCTAAAAAA]
[+] EMBL AK067501 [AACAAAACCACCGGTACACCGCCCCGGCGCGGCGCGCGGAGACGTGTCCCGATCCAACTCACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATCCGCCCTAGCACGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCAGATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCTGAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGC TCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTTCTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTCGTCCTCCAGTCCGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACG TCGTGAAGCCGAGGCTGGAGAACACCA TCA GCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGG AACAGCTTG CGGA GGAGGTTGCCCTCAAGAGGGGTATCTCT GTGGGTGCTGCCA CCAACATGTTGGTTG CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCA AAAGACC ACAAATAATTTGTACT TGGAACC AACCAACGGATGGATTGTTTATGTGC AGTTTTCGTAGTTAATTCAA TTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGC TATATATTTGTTTGGAAAGGTGTTCGTTGATTGGGGTTTCGCAAACTGAAGCTGCAGACTCGAAGTGTATTTCGATCTGGTTGAGTAATTCTGTACTCTGTACTGTAGCAGCACACTTTTCGTTCTGAATTGTCGTGGATGGGAAAAGAAT ]
[+] EMBL AU064494 [ CGATCCGCCCTAGCACGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCAGATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCTGAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCANCCGCGGCCACG GCTTCCTNAAGAAGAAGTTGGACGCGCTCACCG ]
[+] EMBL CB628170 [ CCGCCACGTCGTCCTCCAGTCCGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACG TCGTGAAGCCGAGGCTGGAGAACACCA TCA GCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGG AACAGCTTG CGGA GGAGGTTGCCCTCAAGAGGGGTATCTCT GTGGGTGCTGCCA CCAACATGTTGGTTG CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCA AAAGACC ACAAATAATTTGTACT TGGAACC AACCAACGGATGGATTGTTTATGTGC AGTTTTCGTAGTTAATTCAA TTGGGCTG ]
[-] EMBL CB628171 [ CGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACG TCGTGAAGCCGAGGCTGGAGAACACCA TCA GCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGG AACAGCTTG CGGA GGAGGTTGCCCTCAAGAGGGGTATCTCT GTGGGTGCTGCCA CCAACATGTTGGTTG CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCA AAAGACC ACAAATAATTTGTACT TGGAACC AACCAACGGATGGATTGTTTATGTGC AGTGTTCGTAGTTAATTCAA TTGGGCTGTATTTCTTTG ]
[+] EMBL BM421572 [ CAACC CCGTGTCAACGCGCTGGAGAACT TCGTGAA CCGA GCTGGAGAACACCA TCA GCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGAT GCTGCAGCCAA CAATTCGCAGAGG AACAGCTTG CGGA GGAGGTTGCCCTCAAGAGGGGTATCTCT GTGGGTGCTGCCA CCAACATGTTGGTT CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGT GCGGAGGTTTTGTTTCA GCGGTAGTCTGGACTCTGTTCATCC AAAGACC AC AATAATTTGTACT TGGAACC AACCAACGGATGGATTGTTTATGT C AGTTTTCGTAGTTAATTCAACTTGGNCTGTATTTCTTTGCCAaaaaaaaaa ]
[+] EMBL BQ908377 [ CGCTGGAGAACGTTCGTGAAGCCGAGGCTGGAGAACACCA TCA GCTACATCAAGGGGGA CTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGG AACAGCTTGTCGGA GGAGGTTGCCCTCAAGAGGGGTATCTCT GTGGGTGCTGCCA CCAACATGTTGGTTG CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCA AAAGACC ACAAATAATTTGTACT TGGAACC AACCAACGGATGGATTGTTTATGTGC AGTTTTCGTAGTTAATTCAA TTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGC TATATATTTGTTTGGAAAGGTGTTCGTTGATTGGGGTTTCGCAAACTGAAGCTGCAGACTCGAAGTGTATTTCGATCTGGTTGAGTAATTCTGTACTCTGTACTGTAaaaaaa ]
[+] EMBL BI808617 [ TGGAGGACACCATTCAGGCTACATCAA GGGGA CTGGACGAGCTCGAGCGTGA GACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGA GCAGAT GCT CA CCAAGCAATTCGCAGAGG AACAGCTTT CGGATGGAGGTTGCCCTCAAGAGGGGTATCTCTGGTGGGTGCTTCCACCCAACATGTTGGTTGTCCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGTGGATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCACAAAGACC ACAAATAATTTGTACTGTGGAACC AACCCACGGATGGATTGTTTATGTGC AGTTTTCGTAGTTAATTCAA TTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGC TATATATTTGTTTGGAAAGGTGTTCGTTGATTGGGGTTTCGCAAACTGAAGCTGCAGACTCGAAGTGTATTTCGATCTGGTTGAaaaaaaaaa ]
[+] EMBL BI813686 [ TCGCAGAGGCAACA CTTG CGGA GGAGGTCCCACTCAAGAGGGGTATCTCT GT GGTCCTCCCA CCAACATGTTGGT CCCGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTCAATACAGGGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGCCGGAGTTTTTGTTTCAGCCGGTAGTCTGGACTCTGTTCATCCA AAAGACCAACAAATAATTTGTACT TGGAACCAAACCAACGGATGGATTGTTTATGTCCAAGTTTTCGTAGTTAATTCAA TTGGGCTGTATTTCTTT CCATGTTCGTTTTAGCATATATATTTGTTTGGAAAGGTGTTCGTTGATTGGGTTTTCCCAAACTGAAGCTCCAGACTCGAAGTGTATTTCGATCT GTTGAGTAATTCTGTACTCTGTACTGTACCACCACACTTTTCGTTCTGAATTGTCGTGGATGGGAAAAGAATAATTAAGCTCTAAAAAA]
consensusID : consensus_13298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1125 fasta sequence
[AGATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCTGAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTTCTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTTGTCCTCCAGTCCGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACGTCGTGAAGCCGAGGCTGGAGAACACCATCAGCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGGAACAGCTTGCGGAGGAGGTTGCCCTCAAGAGGGGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTCATACAGTGATTCAATCGGTGCGTAGTATTGATGCTTTATGCTATTTTTGTGATCTGATATTGGAAACCTCTCATAGATGTGTTCACAGTGGCACATTCTTTTCATAAGAACTACAATTTTAATATATCAGACTTCAGTATTAGTTAAGTTGCATCAATTAGAGATAACTGTTTTTAGGAACAGTGGTTCTTAGATGGATGCAATTTACTTTGTTAGATATGTCAAGATATCAAACTAATGATCCTATTCAA]
[+] EMBL AK106989 [AGATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCTGAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTTCTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTTGTCCTCCAGTCCGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACGTCGTGAAGCCGAGGCTGGAGAACACCATCAGCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGGAACAGCTTGCGGAGGAGGTTGCCCTCAAGAGGGGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTCATACAGTGATTCAATCGGTGCGTAGTATTGATGCTTTATGCTATTTTTGTGATCTGATATTGGAAACCTCTCATAGATGTGTTCACAGTGGCACATTCTTTTCATAAGAACTACAATTTTAATATATCAGACTTCAGTATTAGTTAAGTTGCATCAATTAGAGATAACTGTTTTTAGGAACAGTGGTTCTTAGATGGATGCAATTTACTTTGTTAGATATGTCAAGATATCAAACTAATGATCCTATTCAA]
consensusID : consensus_13298#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[AAACCACCGGTACACCGCCCCGGAGCGGCGCGCGGAGACGTGTCCCGATCCAACTCACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATCCGGCCTAGCAGCGATCCCCTACGACATCCCCGTCTACGATCCCCCTCCTCCACCTCAGATCTACGGCGAGCCGATCGAATACGCCGTTGCTCTAGTAGCGGCCGTGCGATGTCTCAGCATACGCAACGACTGAACATGGTGCCGACGGTGACGATGCTCGGGGACATGAACGCCCGGTTACGCTGCGCCACCTGCGGTCACGCGCTCCTCAGGAAGAAGTCTGACGCGCTGACCGTGCAGATCCAAGCCATTCTCAACAAGATGGGCGCCGCCAATGAGTCCATGAGGGATGCCAGTGAGACGTTCTACTTCTACGTCAGCGAAGTCGAGACGTCGGCGGCGACAGAGGACGAATGTCGTGCTACAGATCGTCGATGCACTGGATCGTGATCATCTCAGACGAGACATAGACGATTTACGAACCAAGGATTGACTTGACTAGCTTCGCCGTACGTGACCATCAAGAGGGTCAATTACGACTTGCCCGAAGGCATAGTGCTCTGCAGCGTTAGTAAGCCTTAGGGCTGTAACGCATATTGAAGACTTCTTCCTGAAGGCTCGCCAAATGTCTGAGCCTGAATCTGACTGTGG]
[+] EMBL AW155280 [AAACCACCGGTACACCGCCCCGGAGCGGCGCGCGGAGACGTGTCCCGATCCAACTCACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATCCGGCCTAGCAGCGATCCCCTACGACATCCCCGTCTACGATCCCCCTCCTCCACCTCAGATCTACGGCGAGCCGATCGAATACGCCGTTGCTCTAGTAGCGGCCGTGCGATGTCTCAGCATACGCAACGACTGAACATGGTGCCGACGGTGACGATGCTCGGGGACATGAACGCCCGGTTACGCTGCGCCACCTGCGGTCACGCGCTCCTCAGGAAGAAGTCTGACGCGCTGACCGTGCAGATCCAAGCCATTCTCAACAAGATGGGCGCCGCCAATGAGTCCATGAGGGATGCCAGTGAGACGTTCTACTTCTACGTCAGCGAAGTCGAGACGTCGGCGGCGACAGAGGACGAATGTCGTGCTACAGATCGTCGATGCACTGGATCGTGATCATCTCAGACGAGACATAGACGATTTACGAACCAAGGATTGACTTGACTAGCTTCGCCGTACGTGACCATCAAGAGGGTCAATTACGACTTGCCCGAAGGCATAGTGCTCTGCAGCGTTAGTAAGCCTTAGGGCTGTAACGCATATTGAAGACTTCTTCCTGAAGGCTCGCCAAATGTCTGAGCCTGAATCTGACTGTGG]
consensusID : consensus_13298#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[AGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGGANCAGCTTNCGGAGGAGGTTGCCCTCAAGAGGGGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTCATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGTGATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCAAAAGACCACAAATAATTTGTACTTGGAACCAACCAACGGATGGATTGTTTATGTGCAGTTTTCGTAGTTAATTCAATTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGCTATATATTTGTTTGGAAAAAAAAAAAAA]
[+] EMBL AU166116 [AGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGGANCAGCTTNCGGAGGAGGTTGCCCTCAAGAGGGGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTCATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGTGATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCAAAAGACCACAAATAATTTGTACTTGGAACCAACCAACGGATGGATTGTTTATGTGCAGTTTTCGTAGTTAATTCAATTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGCTATATATTTGTTTGGAAAAAAAAAAAAA]
consensusID : consensus_13298#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence
[TAAGCCCGATCCGCCCCTACACGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCATATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGACGATGTCGGGGCAGATACGCAGCGCCTGAACGTTGGTGCCGACGGTGAACGATATGCTCGGGGTCATGAAGTGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAAATCGTCCCGCAGATCATGGGGAGCATAGCTCTCTCTCTCGCAGCATCTCCGCAGGTCGCACGTCTCTCATCTCGATCGCTCATCGTTCGCTCCAG]
[+] EMBL AA751826 [TAAGCCCGATCCGCCCCTACACGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCATATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGACGATGTCGGGGCAGATACGCAGCGCCTGAACGTTGGTGCCGACGGTGAACGATATGCTCGGGGTCATGAAGTGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAAATCGTCCCGCAGATCATGGGGAGCATAGCTCTCTCTCTCGCAGCATCTCCGCAGGTCGCACGTCTCTCATCTCGATCGCTCATCGTTCGCTCCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13298#2 ------------------------------------------------------------
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 AACAAAACCACCGGTACACCGCCCCGGCGCGGCGCGCGGAGACGTGTCCCGATCCAACTC 60
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 ------------------------------------------------------------
consensus_13298#2 ------------------------------------------------------------
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 ACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATCCGCCCTAGCA 120
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 ------------------------------------------------------------
consensus_13298#2 ------------------------------------------------------------
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 CGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCAGATCTCCGGCGAGC 180
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 ---------------------------------------------AGATCTCCGGCGAGC 15
consensus_13298#2 ------------------------------------------------------------
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 CGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCT 240
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 CGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCT 75
consensus_13298#2 ------------------------------------------------------------
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 GAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCAC 300
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 GAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCAC 135
consensus_13298#2 ------------------------------------------------------------
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 CCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCAT 360
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 CCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCAT 195
consensus_13298#2 ------------------------------------------------------------
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 CCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTT 420
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 CCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTT 255
consensus_13298#2 ------------------------------------------------------------
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 CTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTCGTCCTCCAGTC 480
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 CTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTTGTCCTCCAGTC 315
consensus_13298#2 ------------------------------------------------------------
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 CGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCT 540
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 CGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCT 375
consensus_13298#2 ------------------------------------------------------------
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 CCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTC 600
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 CCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTC 435
consensus_13298#2 ------------------------------------------------------------
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 CCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCA 660
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 CCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCA 495
consensus_13298#2 --------------AAACCACCGGTACACCGCCCCGGAGCGGCGCGCGGAGACGTGTCCC 46
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 CGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCT 720
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 CGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCT 555
consensus_13298#2 GATCCAACTCACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATC 106
consensus_13298#4 -------------------------------------------------TAAGCCCGATC 11
consensus_13298#0 CGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACGTCGTGAAGCC 780
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 CGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACGTCGTGAAGCC 615
consensus_13298#2 CGGCCTAGCAGCGATCCCCTACGACATCCCCGTCTACGATCCCCCTCCTCCACCTCAGAT 166
consensus_13298#4 CGCCCCTACA-CGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCATAT 70
consensus_13298#0 GAGGCTGGAGAACACCATCAGCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGA 840
consensus_13298#3 --------------------------------------------------------AGGA 4
consensus_13298#1 GAGGCTGGAGAACACCATCAGCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGA 675
*
consensus_13298#2 CTACGGCGAGC-CGATCGAATACGCCGTTGCTCTAGTAGCG--GCCGTG-CG-ATGTCTC 221
consensus_13298#4 CTCCGGCGAGC-CGATCGAATCGGCGGCTGCGGCGGCGGCG--GCGGCGACG-ATGTCGG 126
consensus_13298#0 CTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGC 900
consensus_13298#3 CTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGC 64
consensus_13298#1 CTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGC 735
** * * ** * * ** * * * * * * * * * *
consensus_13298#2 AGCA--TACGCAACGACTGAACAT-GGTGCCGACGGTGA-CGAT--GCTCGGGGACATGA 275
consensus_13298#4 GGCAGATACGCAGCGCCTGAACGTTGGTGCCGACGGTGAACGATATGCTCGGGGTCATGA 186
consensus_13298#0 TGCAGCCAAGCAATTCGCAGAGGA-ACAGCTTGCGGAGGAGGTTGCCCTCAAGA----GG 955
consensus_13298#3 TGCAGCCAAGCAATTCGCAGAGGA-NCAGCTTNCGGAGGAGGTTGCCCTCAAGA----GG 119
consensus_13298#1 TGCAGCCAAGCAATTCGCAGAGGA-ACAGCTTGCGGAGGAGGTTGCCCTCAAGA----GG 790
*** * *** * ** *** * * * *** * *
consensus_13298#2 A-CGCCCGGTTACGCTGCGCCACCTGCGGTCACGCGCTCCTCAGGAAGAAGTCTGACGCG 334
consensus_13298#4 AGTGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCG 246
consensus_13298#0 GGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGG---GACGAA 1012
consensus_13298#3 GGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGG---GACGAA 176
consensus_13298#1 GGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGG---GACGAA 847
* * ****** * * * *** * ****
consensus_13298#2 CTGACCGTGCAGATCCAAGCCATTCTCAACAAGATGGGCGCCGCCAATGAGTCCATGAGG 394
consensus_13298#4 CTCACCGTGCAGTTCCGCGCCATCCTCAA---AATCGTC-CCGCAGAT-----CATGGGG 297
consensus_13298#0 GACATCAT----CTTCTGATCATCTTCGGTCATACAGTGATT--CAAT-----CGTGGTG 1061
consensus_13298#3 GACATCAT----CTTCTGATCATCTTCGGTCATACAGTGATT--CAAT-----CGTGGTG 225
consensus_13298#1 GACATCAT----CTTCTGATCATCTTCGGTCATACAGTGATT--CAAT-----CGGTGCG 896
* * * * * *** ** * * ** * *
consensus_13298#2 GATGCCAGTGAGACGTTCTACTTCTACGTCAGCGAAGTCGAGACGTCGGCGGCGACAGAG 454
consensus_13298#4 AGCATAGCT----CTCTCTCTCGCAGCATCTCCGCAGGTCGCACGTCTCTCATCTCGATC 353
consensus_13298#0 GA-AATAATAAGTTGTGATGCTGGAGCTCCA--GAATCGCACCTGTTTATAGAGT----- 1113
consensus_13298#3 GA-AATAATAAGTTGTGATGCTGGAGCTCCA--GAATCGCACCTGTTTATAGAGT----- 277
consensus_13298#1 TA-G-TATTGATGCTTTATGCT--ATTTTTG--TGATCTGA--TATTGGAAACCT----- 943
* * * *
consensus_13298#2 GACGAATGTCGTGCTACAGATCGTCGATGCACTGGATCGTGATCATCTCAGACGAGACAT 514
consensus_13298#4 GCTCATCGTT-CGCTCCAG----------------------------------------- 371
consensus_13298#0 GGCGGAGGTTTTGTTTCAGG----CGGTAGTCTGGACTCTGTTCATCCAAAAGACCACA- 1168
consensus_13298#3 GGCGGAGGTTTTGTTTCAGG----CGGTAGTCTGGACTCTGTTCATCCAAAAGACCACA- 332
consensus_13298#1 CTCATAGATGT-GTTCACAG----TGGCA-----CATTCTTTTCATAAGAACTACAATTT 993
* * *
consensus_13298#2 AGACGATTTACGAACCAAGGATTGACTTGACTAGCTTCGCCGTACGTGACCATCAAGAGG 574
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 -AATAATTTGT-ACTT-GGAACCAACCAA--CGGATGGATTGTTTATGTGCAGTTTTCGT 1223
consensus_13298#3 -AATAATTTGT-ACTT-GGAACCAACCAA--CGGATGGATTGTTTATGTGCAGTTTTCGT 387
consensus_13298#1 TAATATATCAG-ACTTCAGTATTAGTTAAGTTGCATCAATTAGAGATA-ACTGTTTTTAG 1051
consensus_13298#2 GTCAATTACGACTTGCCCGAAGGCATAGTGCTCTGC-AGCGTTAGTAAGCCTTAGGGCTG 633
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 AGTTAATTCAATTGGGCTGTATTTC-TTTGCCATGTTCGTTTTAGCTATATATTTGTTTG 1282
consensus_13298#3 AGTTAATTCAATTGGGCTGTATTTC-TTTGCCATGTTCGTTTTAGCTATATATTTGTTTG 446
consensus_13298#1 GAACAGTGGTTCTTAGATGGATGCAATTTACTTTGTTAGATATGTCAAGATATCAAACTA 1111
consensus_13298#2 TAACGCATATTGAAGACTTCTTCCTGAAGGCTCGCCAAATGTCTGAGCCTGAATCTGACT 693
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 GAAAGGTGTTCGTTGATTGGGGTTTCGCAAACTGAAGCTGCAGACTCGAAGTGTATTTCG 1342
consensus_13298#3 GAAAAAAAAAAAAA---------------------------------------------- 460
consensus_13298#1 ATGATCCTATTCAA---------------------------------------------- 1125
consensus_13298#2 GTGG-------------------------------------------------------- 697
consensus_13298#4 ------------------------------------------------------------
consensus_13298#0 ATCTGGTTGAGTAATTCTGTACTCTGTACTGTAGCAGCACACTTTTCGTTCTGAATTGTC 1402
consensus_13298#3 ------------------------------------------------------------
consensus_13298#1 ------------------------------------------------------------
consensus_13298#2 ----------------------------------
consensus_13298#4 ----------------------------------
consensus_13298#0 GTGGATGGGAAAAGAATAATTAAGCTCTAAAAAA 1436
consensus_13298#3 ----------------------------------
consensus_13298#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||