These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1436 fasta sequence [AACAAAACCACCGGTACACCGCCCCGGCGCGGCGCGCGGAGACGTGTCCCGATCCAACTCACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATCCGCCCTAGCACGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCAGATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCTGAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGC-TCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTTCTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTCGTCCTCCAGTCCGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACG-TCGTGAAGCCGAGGCTGGAGAACACCA-TCA-GCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGG-AACAGCTTG-CGGA-GGAGGTTGCCCTCAAGAGGGGTATCTCT-GTGGGTGCTGCCA-CCAACATGTTGGTTG-CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC-ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT-GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCA-AAAGACC-ACAAATAATTTGTACT-TGGAACC-AACCAACGGATGGATTGTTTATGTGC-AGTTTTCGTAGTTAATTCAA-TTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGC-TATATATTTGTTTGGAAAGGTGTTCGTTGATTGGGGTTTCGCAAACTGAAGCTGCAGACTCGAAGTGTATTTCGATCTGGTTGAGTAATTCTGTACTCTGTACTGTAGCAGCACACTTTTCGTTCTGAATTGTCGTGGATGGGAAAAGAATAATTAAGCTCTAAAAAA] [+] EMBL AK067501 [AACAAAACCACCGGTACACCGCCCCGGCGCGGCGCGCGGAGACGTGTCCCGATCCAACTCACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATCCGCCCTAGCACGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCAGATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCTGAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGC TCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTTCTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTCGTCCTCCAGTCCGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACG TCGTGAAGCCGAGGCTGGAGAACACCA TCA GCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGG AACAGCTTG CGGA GGAGGTTGCCCTCAAGAGGGGTATCTCT GTGGGTGCTGCCA CCAACATGTTGGTTG CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCA AAAGACC ACAAATAATTTGTACT TGGAACC AACCAACGGATGGATTGTTTATGTGC AGTTTTCGTAGTTAATTCAA TTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGC TATATATTTGTTTGGAAAGGTGTTCGTTGATTGGGGTTTCGCAAACTGAAGCTGCAGACTCGAAGTGTATTTCGATCTGGTTGAGTAATTCTGTACTCTGTACTGTAGCAGCACACTTTTCGTTCTGAATTGTCGTGGATGGGAAAAGAAT ] [+] EMBL AU064494 [ CGATCCGCCCTAGCACGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCAGATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCTGAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCANCCGCGGCCACG GCTTCCTNAAGAAGAAGTTGGACGCGCTCACCG ] [+] EMBL CB628170 [ CCGCCACGTCGTCCTCCAGTCCGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACG TCGTGAAGCCGAGGCTGGAGAACACCA TCA GCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGG AACAGCTTG CGGA GGAGGTTGCCCTCAAGAGGGGTATCTCT GTGGGTGCTGCCA CCAACATGTTGGTTG CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCA AAAGACC ACAAATAATTTGTACT TGGAACC AACCAACGGATGGATTGTTTATGTGC AGTTTTCGTAGTTAATTCAA TTGGGCTG ] [-] EMBL CB628171 [ CGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACG TCGTGAAGCCGAGGCTGGAGAACACCA TCA GCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGG AACAGCTTG CGGA GGAGGTTGCCCTCAAGAGGGGTATCTCT GTGGGTGCTGCCA CCAACATGTTGGTTG CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCA AAAGACC ACAAATAATTTGTACT TGGAACC AACCAACGGATGGATTGTTTATGTGC AGTGTTCGTAGTTAATTCAA TTGGGCTGTATTTCTTTG ] [+] EMBL BM421572 [ CAACC CCGTGTCAACGCGCTGGAGAACT TCGTGAA CCGA GCTGGAGAACACCA TCA GCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGAT GCTGCAGCCAA CAATTCGCAGAGG AACAGCTTG CGGA GGAGGTTGCCCTCAAGAGGGGTATCTCT GTGGGTGCTGCCA CCAACATGTTGGTT CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGT GCGGAGGTTTTGTTTCA GCGGTAGTCTGGACTCTGTTCATCC AAAGACC AC AATAATTTGTACT TGGAACC AACCAACGGATGGATTGTTTATGT C AGTTTTCGTAGTTAATTCAACTTGGNCTGTATTTCTTTGCCAaaaaaaaaa ] [+] EMBL BQ908377 [ CGCTGGAGAACGTTCGTGAAGCCGAGGCTGGAGAACACCA TCA GCTACATCAAGGGGGA CTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGG AACAGCTTGTCGGA GGAGGTTGCCCTCAAGAGGGGTATCTCT GTGGGTGCTGCCA CCAACATGTTGGTTG CCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCA AAAGACC ACAAATAATTTGTACT TGGAACC AACCAACGGATGGATTGTTTATGTGC AGTTTTCGTAGTTAATTCAA TTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGC TATATATTTGTTTGGAAAGGTGTTCGTTGATTGGGGTTTCGCAAACTGAAGCTGCAGACTCGAAGTGTATTTCGATCTGGTTGAGTAATTCTGTACTCTGTACTGTAaaaaaa ] [+] EMBL BI808617 [ TGGAGGACACCATTCAGGCTACATCAA GGGGA CTGGACGAGCTCGAGCGTGA GACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGA GCAGAT GCT CA CCAAGCAATTCGCAGAGG AACAGCTTT CGGATGGAGGTTGCCCTCAAGAGGGGTATCTCTGGTGGGTGCTTCCACCCAACATGTTGGTTGTCCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTC ATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGTGGATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCACAAAGACC ACAAATAATTTGTACTGTGGAACC AACCCACGGATGGATTGTTTATGTGC AGTTTTCGTAGTTAATTCAA TTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGC TATATATTTGTTTGGAAAGGTGTTCGTTGATTGGGGTTTCGCAAACTGAAGCTGCAGACTCGAAGTGTATTTCGATCTGGTTGAaaaaaaaaa ] [+] EMBL BI813686 [ TCGCAGAGGCAACA CTTG CGGA GGAGGTCCCACTCAAGAGGGGTATCTCT GT GGTCCTCCCA CCAACATGTTGGT CCCGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTCAATACAGGGATTCAATCGTGGTGGAAATAATAAGTTGT GATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGCCGGAGTTTTTGTTTCAGCCGGTAGTCTGGACTCTGTTCATCCA AAAGACCAACAAATAATTTGTACT TGGAACCAAACCAACGGATGGATTGTTTATGTCCAAGTTTTCGTAGTTAATTCAA TTGGGCTGTATTTCTTT CCATGTTCGTTTTAGCATATATATTTGTTTGGAAAGGTGTTCGTTGATTGGGTTTTCCCAAACTGAAGCTCCAGACTCGAAGTGTATTTCGATCT GTTGAGTAATTCTGTACTCTGTACTGTACCACCACACTTTTCGTTCTGAATTGTCGTGGATGGGAAAAGAATAATTAAGCTCTAAAAAA] consensusID : consensus_13298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1125 fasta sequence [AGATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCTGAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTTCTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTTGTCCTCCAGTCCGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACGTCGTGAAGCCGAGGCTGGAGAACACCATCAGCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGGAACAGCTTGCGGAGGAGGTTGCCCTCAAGAGGGGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTCATACAGTGATTCAATCGGTGCGTAGTATTGATGCTTTATGCTATTTTTGTGATCTGATATTGGAAACCTCTCATAGATGTGTTCACAGTGGCACATTCTTTTCATAAGAACTACAATTTTAATATATCAGACTTCAGTATTAGTTAAGTTGCATCAATTAGAGATAACTGTTTTTAGGAACAGTGGTTCTTAGATGGATGCAATTTACTTTGTTAGATATGTCAAGATATCAAACTAATGATCCTATTCAA] [+] EMBL AK106989 [AGATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCTGAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTTCTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTTGTCCTCCAGTCCGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCTCCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTCCCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCACGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCTCGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACGTCGTGAAGCCGAGGCTGGAGAACACCATCAGCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGGAACAGCTTGCGGAGGAGGTTGCCCTCAAGAGGGGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTCATACAGTGATTCAATCGGTGCGTAGTATTGATGCTTTATGCTATTTTTGTGATCTGATATTGGAAACCTCTCATAGATGTGTTCACAGTGGCACATTCTTTTCATAAGAACTACAATTTTAATATATCAGACTTCAGTATTAGTTAAGTTGCATCAATTAGAGATAACTGTTTTTAGGAACAGTGGTTCTTAGATGGATGCAATTTACTTTGTTAGATATGTCAAGATATCAAACTAATGATCCTATTCAA] consensusID : consensus_13298#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [AAACCACCGGTACACCGCCCCGGAGCGGCGCGCGGAGACGTGTCCCGATCCAACTCACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATCCGGCCTAGCAGCGATCCCCTACGACATCCCCGTCTACGATCCCCCTCCTCCACCTCAGATCTACGGCGAGCCGATCGAATACGCCGTTGCTCTAGTAGCGGCCGTGCGATGTCTCAGCATACGCAACGACTGAACATGGTGCCGACGGTGACGATGCTCGGGGACATGAACGCCCGGTTACGCTGCGCCACCTGCGGTCACGCGCTCCTCAGGAAGAAGTCTGACGCGCTGACCGTGCAGATCCAAGCCATTCTCAACAAGATGGGCGCCGCCAATGAGTCCATGAGGGATGCCAGTGAGACGTTCTACTTCTACGTCAGCGAAGTCGAGACGTCGGCGGCGACAGAGGACGAATGTCGTGCTACAGATCGTCGATGCACTGGATCGTGATCATCTCAGACGAGACATAGACGATTTACGAACCAAGGATTGACTTGACTAGCTTCGCCGTACGTGACCATCAAGAGGGTCAATTACGACTTGCCCGAAGGCATAGTGCTCTGCAGCGTTAGTAAGCCTTAGGGCTGTAACGCATATTGAAGACTTCTTCCTGAAGGCTCGCCAAATGTCTGAGCCTGAATCTGACTGTGG] [+] EMBL AW155280 [AAACCACCGGTACACCGCCCCGGAGCGGCGCGCGGAGACGTGTCCCGATCCAACTCACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATCCGGCCTAGCAGCGATCCCCTACGACATCCCCGTCTACGATCCCCCTCCTCCACCTCAGATCTACGGCGAGCCGATCGAATACGCCGTTGCTCTAGTAGCGGCCGTGCGATGTCTCAGCATACGCAACGACTGAACATGGTGCCGACGGTGACGATGCTCGGGGACATGAACGCCCGGTTACGCTGCGCCACCTGCGGTCACGCGCTCCTCAGGAAGAAGTCTGACGCGCTGACCGTGCAGATCCAAGCCATTCTCAACAAGATGGGCGCCGCCAATGAGTCCATGAGGGATGCCAGTGAGACGTTCTACTTCTACGTCAGCGAAGTCGAGACGTCGGCGGCGACAGAGGACGAATGTCGTGCTACAGATCGTCGATGCACTGGATCGTGATCATCTCAGACGAGACATAGACGATTTACGAACCAAGGATTGACTTGACTAGCTTCGCCGTACGTGACCATCAAGAGGGTCAATTACGACTTGCCCGAAGGCATAGTGCTCTGCAGCGTTAGTAAGCCTTAGGGCTGTAACGCATATTGAAGACTTCTTCCTGAAGGCTCGCCAAATGTCTGAGCCTGAATCTGACTGTGG] consensusID : consensus_13298#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [AGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGGANCAGCTTNCGGAGGAGGTTGCCCTCAAGAGGGGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTCATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGTGATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCAAAAGACCACAAATAATTTGTACTTGGAACCAACCAACGGATGGATTGTTTATGTGCAGTTTTCGTAGTTAATTCAATTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGCTATATATTTGTTTGGAAAAAAAAAAAAA] [+] EMBL AU166116 [AGGACTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGCTGCAGCCAAGCAATTCGCAGAGGANCAGCTTNCGGAGGAGGTTGCCCTCAAGAGGGGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGGGACGAAGACATCATCTTCTGATCATCTTCGGTCATACAGTGATTCAATCGTGGTGGAAATAATAAGTTGTGATGCTGGAGCTCCAGAATCGCACCTGTTTATAGAGTGGCGGAGGTTTTGTTTCAGGCGGTAGTCTGGACTCTGTTCATCCAAAAGACCACAAATAATTTGTACTTGGAACCAACCAACGGATGGATTGTTTATGTGCAGTTTTCGTAGTTAATTCAATTGGGCTGTATTTCTTTGCCATGTTCGTTTTAGCTATATATTTGTTTGGAAAAAAAAAAAAA] consensusID : consensus_13298#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [TAAGCCCGATCCGCCCCTACACGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCATATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGACGATGTCGGGGCAGATACGCAGCGCCTGAACGTTGGTGCCGACGGTGAACGATATGCTCGGGGTCATGAAGTGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAAATCGTCCCGCAGATCATGGGGAGCATAGCTCTCTCTCTCGCAGCATCTCCGCAGGTCGCACGTCTCTCATCTCGATCGCTCATCGTTCGCTCCAG] [+] EMBL AA751826 [TAAGCCCGATCCGCCCCTACACGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCATATCTCCGGCGAGCCGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGACGATGTCGGGGCAGATACGCAGCGCCTGAACGTTGGTGCCGACGGTGAACGATATGCTCGGGGTCATGAAGTGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCATCCTCAAAATCGTCCCGCAGATCATGGGGAGCATAGCTCTCTCTCTCGCAGCATCTCCGCAGGTCGCACGTCTCTCATCTCGATCGCTCATCGTTCGCTCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13298#2 ------------------------------------------------------------ consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 AACAAAACCACCGGTACACCGCCCCGGCGCGGCGCGCGGAGACGTGTCCCGATCCAACTC 60 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 ------------------------------------------------------------ consensus_13298#2 ------------------------------------------------------------ consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 ACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATCCGCCCTAGCA 120 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 ------------------------------------------------------------ consensus_13298#2 ------------------------------------------------------------ consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 CGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCAGATCTCCGGCGAGC 180 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 ---------------------------------------------AGATCTCCGGCGAGC 15 consensus_13298#2 ------------------------------------------------------------ consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 CGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCT 240 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 CGATCGAATCGGCGGCTGCGGCGGCGGCGGCGGCGCGATGTCGGGGCAGACGCAGCGCCT 75 consensus_13298#2 ------------------------------------------------------------ consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 GAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCAC 300 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 GAACGTGGTGCCGACGGTGACGATGCTCGGGGTCATGAAGGCCCGGCTCGTCGGCGCCAC 135 consensus_13298#2 ------------------------------------------------------------ consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 CCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCAT 360 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 CCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCGCTCACCGTGCAGTTCCGCGCCAT 195 consensus_13298#2 ------------------------------------------------------------ consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 CCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTT 420 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 CCTCAAGAAGATCGTCGCCGCCAAGGAGTCCATGGGGGAGGCCATGAGGGCGTCCTCCTT 255 consensus_13298#2 ------------------------------------------------------------ consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 CTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTCGTCCTCCAGTC 480 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 CTCCCTCGCCGAGGCCAAGTACGTCGCCGGCGACGGCGTCCGCCACGTTGTCCTCCAGTC 315 consensus_13298#2 ------------------------------------------------------------ consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 CGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCT 540 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 CGTCCGCTCCGCCTCCCTCCGCGTCCGCTCCCACCAGGAGAACGTCGCCGGTGTCAAGCT 375 consensus_13298#2 ------------------------------------------------------------ consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 CCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTC 600 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 CCCCAAGTTCACCCACTTCGTCGACCCCGCCGCCGGCTCCGCTGGGCCATCCAACGCGTC 435 consensus_13298#2 ------------------------------------------------------------ consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 CCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCA 660 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 CCCCAGCCTCACCGGCCTCGCCCGCGGCGGGCAGCAGGTCGCCGCCTGCCGCGCCGCGCA 495 consensus_13298#2 --------------AAACCACCGGTACACCGCCCCGGAGCGGCGCGCGGAGACGTGTCCC 46 consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 CGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCT 720 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 CGTCAAGGCCATCGAGGTGCTCGTCGAGCTCGCCTCGCTGCAGACGTCCTTCCTGACCCT 555 consensus_13298#2 GATCCAACTCACGAATTGGGGAGCACACAACAAAATTCCGATCCAACCCTAAGCCCGATC 106 consensus_13298#4 -------------------------------------------------TAAGCCCGATC 11 consensus_13298#0 CGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACGTCGTGAAGCC 780 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 CGATGAGGCCATCAAGACCACCAACCGCCGTGTCAACGCGCTGGAGAACGTCGTGAAGCC 615 consensus_13298#2 CGGCCTAGCAGCGATCCCCTACGACATCCCCGTCTACGATCCCCCTCCTCCACCTCAGAT 166 consensus_13298#4 CGCCCCTACA-CGATCCCCTCCCCCCTCCCCGTCTCCGATCCCCCTCCTCCACCTCATAT 70 consensus_13298#0 GAGGCTGGAGAACACCATCAGCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGA 840 consensus_13298#3 --------------------------------------------------------AGGA 4 consensus_13298#1 GAGGCTGGAGAACACCATCAGCTACATCAAGGGGGAGCTGGACGAGCTCGAGCGTGAGGA 675 * consensus_13298#2 CTACGGCGAGC-CGATCGAATACGCCGTTGCTCTAGTAGCG--GCCGTG-CG-ATGTCTC 221 consensus_13298#4 CTCCGGCGAGC-CGATCGAATCGGCGGCTGCGGCGGCGGCG--GCGGCGACG-ATGTCGG 126 consensus_13298#0 CTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGC 900 consensus_13298#3 CTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGC 64 consensus_13298#1 CTTCTTCAGGCTCAAGAAGATCCAGGGTTACAAGAAGAGGGAGATCGAGAGGCAGATGGC 735 ** * * ** * * ** * * * * * * * * * * consensus_13298#2 AGCA--TACGCAACGACTGAACAT-GGTGCCGACGGTGA-CGAT--GCTCGGGGACATGA 275 consensus_13298#4 GGCAGATACGCAGCGCCTGAACGTTGGTGCCGACGGTGAACGATATGCTCGGGGTCATGA 186 consensus_13298#0 TGCAGCCAAGCAATTCGCAGAGGA-ACAGCTTGCGGAGGAGGTTGCCCTCAAGA----GG 955 consensus_13298#3 TGCAGCCAAGCAATTCGCAGAGGA-NCAGCTTNCGGAGGAGGTTGCCCTCAAGA----GG 119 consensus_13298#1 TGCAGCCAAGCAATTCGCAGAGGA-ACAGCTTGCGGAGGAGGTTGCCCTCAAGA----GG 790 *** * *** * ** *** * * * *** * * consensus_13298#2 A-CGCCCGGTTACGCTGCGCCACCTGCGGTCACGCGCTCCTCAGGAAGAAGTCTGACGCG 334 consensus_13298#4 AGTGCCCGGCTCGTCGGCGCCACCCGCGGCCACGCGCTCCTCAAGAAGAAGTCGGACGCG 246 consensus_13298#0 GGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGG---GACGAA 1012 consensus_13298#3 GGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGG---GACGAA 176 consensus_13298#1 GGTATCTCTGTGGGTGCTGCCACCAACATGTTGGTTGCCGGTGGAGAGAGG---GACGAA 847 * * ****** * * * *** * **** consensus_13298#2 CTGACCGTGCAGATCCAAGCCATTCTCAACAAGATGGGCGCCGCCAATGAGTCCATGAGG 394 consensus_13298#4 CTCACCGTGCAGTTCCGCGCCATCCTCAA---AATCGTC-CCGCAGAT-----CATGGGG 297 consensus_13298#0 GACATCAT----CTTCTGATCATCTTCGGTCATACAGTGATT--CAAT-----CGTGGTG 1061 consensus_13298#3 GACATCAT----CTTCTGATCATCTTCGGTCATACAGTGATT--CAAT-----CGTGGTG 225 consensus_13298#1 GACATCAT----CTTCTGATCATCTTCGGTCATACAGTGATT--CAAT-----CGGTGCG 896 * * * * * *** ** * * ** * * consensus_13298#2 GATGCCAGTGAGACGTTCTACTTCTACGTCAGCGAAGTCGAGACGTCGGCGGCGACAGAG 454 consensus_13298#4 AGCATAGCT----CTCTCTCTCGCAGCATCTCCGCAGGTCGCACGTCTCTCATCTCGATC 353 consensus_13298#0 GA-AATAATAAGTTGTGATGCTGGAGCTCCA--GAATCGCACCTGTTTATAGAGT----- 1113 consensus_13298#3 GA-AATAATAAGTTGTGATGCTGGAGCTCCA--GAATCGCACCTGTTTATAGAGT----- 277 consensus_13298#1 TA-G-TATTGATGCTTTATGCT--ATTTTTG--TGATCTGA--TATTGGAAACCT----- 943 * * * * consensus_13298#2 GACGAATGTCGTGCTACAGATCGTCGATGCACTGGATCGTGATCATCTCAGACGAGACAT 514 consensus_13298#4 GCTCATCGTT-CGCTCCAG----------------------------------------- 371 consensus_13298#0 GGCGGAGGTTTTGTTTCAGG----CGGTAGTCTGGACTCTGTTCATCCAAAAGACCACA- 1168 consensus_13298#3 GGCGGAGGTTTTGTTTCAGG----CGGTAGTCTGGACTCTGTTCATCCAAAAGACCACA- 332 consensus_13298#1 CTCATAGATGT-GTTCACAG----TGGCA-----CATTCTTTTCATAAGAACTACAATTT 993 * * * consensus_13298#2 AGACGATTTACGAACCAAGGATTGACTTGACTAGCTTCGCCGTACGTGACCATCAAGAGG 574 consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 -AATAATTTGT-ACTT-GGAACCAACCAA--CGGATGGATTGTTTATGTGCAGTTTTCGT 1223 consensus_13298#3 -AATAATTTGT-ACTT-GGAACCAACCAA--CGGATGGATTGTTTATGTGCAGTTTTCGT 387 consensus_13298#1 TAATATATCAG-ACTTCAGTATTAGTTAAGTTGCATCAATTAGAGATA-ACTGTTTTTAG 1051 consensus_13298#2 GTCAATTACGACTTGCCCGAAGGCATAGTGCTCTGC-AGCGTTAGTAAGCCTTAGGGCTG 633 consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 AGTTAATTCAATTGGGCTGTATTTC-TTTGCCATGTTCGTTTTAGCTATATATTTGTTTG 1282 consensus_13298#3 AGTTAATTCAATTGGGCTGTATTTC-TTTGCCATGTTCGTTTTAGCTATATATTTGTTTG 446 consensus_13298#1 GAACAGTGGTTCTTAGATGGATGCAATTTACTTTGTTAGATATGTCAAGATATCAAACTA 1111 consensus_13298#2 TAACGCATATTGAAGACTTCTTCCTGAAGGCTCGCCAAATGTCTGAGCCTGAATCTGACT 693 consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 GAAAGGTGTTCGTTGATTGGGGTTTCGCAAACTGAAGCTGCAGACTCGAAGTGTATTTCG 1342 consensus_13298#3 GAAAAAAAAAAAAA---------------------------------------------- 460 consensus_13298#1 ATGATCCTATTCAA---------------------------------------------- 1125 consensus_13298#2 GTGG-------------------------------------------------------- 697 consensus_13298#4 ------------------------------------------------------------ consensus_13298#0 ATCTGGTTGAGTAATTCTGTACTCTGTACTGTAGCAGCACACTTTTCGTTCTGAATTGTC 1402 consensus_13298#3 ------------------------------------------------------------ consensus_13298#1 ------------------------------------------------------------ consensus_13298#2 ---------------------------------- consensus_13298#4 ---------------------------------- consensus_13298#0 GTGGATGGGAAAAGAATAATTAAGCTCTAAAAAA 1436 consensus_13298#3 ---------------------------------- consensus_13298#1 ---------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||