These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1662 fasta sequence [AAAAAAAAAAGAAAAGAGGAAGAAGGGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGC-GTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGA-GGGTGAAGATCTTCTGGAGCTCATTCA-GGGCATGGCTATGCGAGTA-TTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATATTTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAAGAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATGGCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTCGTGCCTCTGCTGTCTTTGCCCCAGAAAACTCTGCTTTCGCTGATTACCGATGCAGATATTCGTACTATTTCTCCATTCGTCTATCCCTTCCTGAAGCATTCGTTGTAGATGGCAAGTGGTATTCTTCCTTCCAGCTTCAGTCATGCCACTACACTATTCAGATTGGAGATGAAGTCCTCCCTTACACATGCAACTATGGCGGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTCCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCAAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACAACACACTTTTCGGCAGTGACATGATGTTACTTTTCGGCAGTGACATGATGTTCCGTTTGTTAATGCGGCTTGCTTGCTTCT] [+] EMBL AK071935 [AAAAAAAAAAGAAAAGAGGAAGAAGGGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGC GTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGA GGGTGAAGATCTTCTGGAGCTCATTCA GGGCATGGCTATGCGAGTA TTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACGGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATATTTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAAGAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATGGCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTCGTGCCTCTGCTGTCTTTGCCCCAGAAAACTCTGCTTTCGCTGATTACCGATGCAGATATTCGTACTATTTCTCCATTCGTCTATCCCTTCCTGAAGCATTCGTTGTAGATGGCAAGTGGTATTCTTCCTTCCAGCTTCAGTCATGCCACTACACTATTCAGATTGGAGATGAAGTCCTCCCTTACACATGCAACTATGGCGGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTCCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCAAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACAACAC ] [+] EMBL AK103706 [ AAAAAAAAGAAAAGAGGAAGAAGGGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGC GTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGA GGGTGAAGATCTTCTGGAGCTCATTCA GGGCATGGCTATGCGAGTA TTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATATTTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAAGAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATGGTATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTCGTGCCTCTGCTGTCTTTGCCCCAGAAAACTCTGCTTTCGCTGATTACCGATGCAGATATTCGTACTATTTCTCCATTCGTCTATCCCTTCCTGAAGCATTCGTTGTAGATGGCAAGTGGTATTCTTCCTTCCAGCTTCAGTCATGCCACTACACTATTCAGATTGGAGATGAAGTCCTCCCTTACACATGCAACTATGGCGGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTCCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCAAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACAACACACTTTTCGGCAGTGACATGATGTTACTTTTCGGCAGTGACATGATGTTCCGTTTGTTAATGCGGCTTGCTTGCTTCT] [+] EMBL AU181984 [ AGAAGGGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGCTGTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGNGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTNCCCTTT ] [+] EMBL CB628592 [ AAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGC GTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGA GGGTGAAGATCTTCTGGAGCTCATTCA GGGCATGGCTATGCGAGTA TTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACAAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGTGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGA ] [+] EMBL CB628634 [ AAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGC GTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGA GGGTGAAGATCTTCTGGAGCTCATTCA GGGCATGGCTATGCGAGTA TTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACAAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGTGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACA ] [+] EMBL AU163417 [ GAAAACCCACCGGCGGCCGATGGC GTCG CGGCNAAGGCGCA NGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCAATCATNATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGTTCGCTTGCNCCANTTCCACCCTCCGCGCCGCCGCCTCCGG AAGGCCCTCTGGCGCCACTTCTGCTCCNACGACTTCGCCCTCNACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGAGGGGTGAAGATCTTCTGGAGCTCATTCANGGGCATGGCTATGGAAGTATTTTCCCGGAA GGCTNAGGACTCTAGGGGAAGGCG TTNGGAAGCCGAGATAG CNTCG GGAAT TAACCTGGGCtt ] [+] EMBL CA999719 [ GCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTCGTGCCTCTGCTGTCTTTGCCCCAGAAAACTCTGCTTTCGCTGATTACCGATGCAGATATTCGTACTATTTCTCCATTCGTCTATCCCTTCCTGAAGCATTCGTTGTAGATGGCAAGTGGTATTCTTCCTTCCAGCTTCAGTCATG ] [+] EMBL AU181985 [ GCCATGGCAAGTGTCCTCTCCTNAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTCCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCAAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACAACACACTTTTCGGCAGTGACATGATGTTACTTTTCGGCAGTGACATGATGTTCCGTTTGTTAAaaa ] [+] EMBL BQ906219 [ CCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCAGCAGCACTGGAGCCTGGATCCGTCATGGGCAACTTGACGCTTGTTCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTACACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTTCATC AAGCATGCATGCGGTTGATGCTAATTCTTGTTAGAGCGCCTTTTTGGAAATTTTCCTGGATATATTTCTGTACATGCAGCTCTCGGAATTATTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATAaaaaaaaaa ] consensusID : consensus_13301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1237 fasta sequence [GGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGCGTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCTTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGAGGGTGAAGATCTTCTGGAGCTCATTCAGGGCATGGCTATGCGAGTATTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATATTTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAAGAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATGGCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTAGTAAATTGGCTTTTCTGTTAGTTTATTGCCATGCTTAATATGCTGATTGCATTGCGAGGGTAATTGAATCTATTTTGAAGCACATAGCTAGCCTACTGAAAGTTTTTTTGCTGTTTTATATTTAAAGATTAGATTTTGCTGTTTTATGTTTAATGATGAGCGTCATCGATGTATGATGATGGGGGCTCTGACCCCTGTTCTTCTCCCATAAAAGCATTTTGAAATCTAAAAGTTTGGCTGGTACTGAGTGC] [+] EMBL AK110777 [GGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACCGGCGGCCGATGGCGTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTCTCCCTTCTTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGCCACTTGTTAAGAGGGTGAAGATCTTCTGGAGCTCATTCAGGGCATGGCTATGCGAGTATTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACCGTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGGGAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATATTTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAAGAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATGGCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTAGTAAATTGGCTTTTCTGTTAGTTTATTGCCATGCTTAATATGCTGATTGCATTGCGAGGGTAATTGAATCTATTTTGAAGCACATAGCTAGCCTACTGAAAGTTTTTTTGCTGTTTTATATTTAAAGATTAGATTTTGCTGTTTTATGTTTAATGATGAGCGTCATCGATGTATGATGATGGGGGCTCTGACCCCTGTTCTTCTCCCATAAAAGCATTTTGAAATCTAAAAGTTTGGCTGGTACTGAGTGC] consensusID : consensus_13301#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [ACCGATCCAGATATTCGTACTATTTCTCCATTCGTCTGTCCCTTGCTGAACATTCTTGTAGATGGCCAAGTGGTATTCTTCACTTCCAGCTTCAAGTCATCCCACTACACTATTCAAGATTGGAGATGAAGTCCTCCCATTACACATGCAACTATGGCAGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCAGCAGCACTGGAGCCTGGATCCAGTCATGGGCAACTTGACAGCTTGTTCCTTGGAGGTTTGGTCACCTAGAGGAAGCCACTTTTATTCCGACATAGCTCCATTTCCCTCTACACCCGCACTGACTACATCTTCTGAAGAATTGGAAGCTGGTTCATCAAACATGCATCCAGCTTGATGCTAATTCTTGTTAGAGCCCTTTTTGGAAATTTTCCTGGATATATTTCTGGTACCATCAGCTCTCGAATATTTTCTACAATGACGAAATTCTCATGACTTGAATATATACACACACACTACACACTTAGCCATACATGATTTCCTTTCTAATCGGCTTGCTTGAAAAAAA] [+] EMBL BI811672 [ACCGATCCAGATATTCGTACTATTTCTCCATTCGTCTGTCCCTTGCTGAACATTCTTGTAGATGGCCAAGTGGTATTCTTCACTTCCAGCTTCAAGTCATCCCACTACACTATTCAAGATTGGAGATGAAGTCCTCCCATTACACATGCAACTATGGCAGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCAGCAGCACTGGAGCCTGGATCCAGTCATGGGCAACTTGACAGCTTGTTCCTTGGAGGTTTGGTCACCTAGAGGAAGCCACTTTTATTCCGACATAGCTCCATTTCCCTCTACACCCGCACTGACTACATCTTCTGAAGAATTGGAAGCTGGTTCATCAAACATGCATCCAGCTTGATGCTAATTCTTGTTAGAGCCCTTTTTGGAAATTTTCCTGGATATATTTCTGGTACCATCAGCTCTCGAATATTTTCTACAATGACGAAATTCTCATGACTTGAATATATACACACACACTACACACTTAGCCATACATGATTTCCTTTCTAATCGGCTTGCTTGAAAAAAA] consensusID : consensus_13301#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [TCCCTGAACCATTCGTTGTAGATGCCAATGTATTCTCCCTTCCAGCTTCAGCTCATCCACTACACTATTCAGATTGGAGATGAAGTCCTCCCTTACACATGGCAACTATGCGCCCATGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTTCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCCAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACACACACTTTTCGCAGTGACATGATGTTCCGTTTGTTAATCCGGCTTGCTTGCTTCTGATAGCTTGACAAAA] [+] EMBL BI801948 [TCCCTGAACCATTCGTTGTAGATGCCAATGTATTCTCCCTTCCAGCTTCAGCTCATCCACTACACTATTCAGATTGGAGATGAAGTCCTCCCTTACACATGGCAACTATGCGCCCATGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCTGTTTGTCTATGGGTGTTCCATATCGCAGCACTGGAGCCTGGATCCGTGATGGGCAACTTGACGCTTGTTCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTATTGCCGACATAGCTCCTTTCCCTCTGCACCCGCCTGACTACATCTTCTGAAGAATTGGAAGCTGGTCCATCCAAGCATGCATGCAGTTGAGGCTAATTCTTGCTAGAGCGCCCTTGTTGGAAATTTTCCTGGATATATTTTTGTACGTGCAGCTCTCGGAATTGTTGTCTTGACAAGTGACGAAAGTCTCATGAGCTGTGAATTATATATACACACACACACACACACTTTTCGCAGTGACATGATGTTCCGTTTGTTAATCCGGCTTGCTTGCTTCTGATAGCTTGACAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 AAAAAAAAAAGAAAAGAGGAAGAAGGGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGA 60 consensus_13301#1 ------------------------------------------------------------ consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 AGAAAACCCACCGGCGGCCGATGGCGTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGG 120 consensus_13301#1 ------------------------------------------------------------ consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 CCTCGGTGCTGGAGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCC 180 consensus_13301#1 ------------------------------------------------------------ consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 CCCGCTGCGCCGCCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCG 240 consensus_13301#1 ------------------------------------------------------------ consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 AGGCCCTCTGGCGCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCG 300 consensus_13301#1 ------------------------------------------------------------ consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 GCGACCTCCCTCTCCCTTCCTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGA 360 consensus_13301#1 ------------------------------------------------------------ consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 TGTACCCTTTGCCACTTGTTAAGAGGGTGAAGATCTTCTGGAGCTCATTCAGGGCATGGC 420 consensus_13301#1 ------------------------------------------------------------ consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 TATGCGAGTATTTCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGA 480 consensus_13301#1 ------------------------------------------------------------ consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 TAGCCGTCGCGGAATGTAACCTGGGCCTTGTGCTTCCTATGCCCACTAAGCTACTGTACC 540 consensus_13301#1 ------------------------------------------------------------ consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 GTTTCTGCAACGGCCAGCTGCACATTGGCCGCGGCGAGGAGGTCTCGTACGGCGTTATGG 600 consensus_13301#1 ------------------------------------------------------------ consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 GAGGCTATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATG 660 consensus_13301#1 ------------------------------------------------------------ consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 CTGTTCAGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTTTTGGGGAGAAGATAT 720 consensus_13301#1 -------------GGGAAAAAAAGAAAGACTGCGAAAACCCTCGTAGAAGAAAACCCACC 47 consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 TTCTTCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTATTGGAATGAAGAAA 780 consensus_13301#1 GGCGGCCGATGGCGTCGCCGGCGAAGGCGCAGCGGCGGCCGGAGGGGGCCTCGGTGCTGG 107 consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 GAGAAATCATGGCATGCGTGCCAAAAGCGACAATAAGGCTCGCTGTGGATGATGATCATG 840 consensus_13301#1 AGACCCTCCCCGCGCTCCCGCTCGCGATCATCATCGCCAAGGCCGGCCCCCGCTGCGCCG 167 consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 GCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGGATG 900 consensus_13301#1 CCGCGCTCGCCTGCGCCAGCTCCACCCTCCGCGCCGCCGCCTCCGGCGAGGCCCTCTGGC 227 consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 GCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGTATC 960 consensus_13301#1 GCCACTTCTGCTCCGACGACTTCGCCCTCGACGCCCCCCTCGCTCCCGGCGACCTCCCTC 287 consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 CAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTCGTGCCTCTG 1020 consensus_13301#1 TCCCTTCTTTCAAGGATGCTTACAAAGCTTGGTTCCAATCTTTTGGGATGTACCCTTTGC 347 consensus_13301#2 ------------------------------------ACCGATCCAGATATTCGTACTATT 24 consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 CTGTCTTTGCCCCAGAAAACTCTGCTTTCGCTGATTACCGATGCAGATATTCGTACTATT 1080 consensus_13301#1 CACTTGTTAAGAGGGTGAAGATCTTCTGGAGCTCATTCAGGGCATGGCTATGCGAGTATT 407 consensus_13301#2 TCTCCATTCGTCTGTCCCTTGCTGAAC-ATTC-TTGTAGATGGCCAAGTGGTATTCTTCA 82 consensus_13301#3 ------------------TCCCTGAACCATTCGTTGTAGATG-CCAAT--GTATTCTCC- 38 consensus_13301#0 TCTCCATTCGTCTATCCCTTCCTGAAGCATTCGTTGTAGATG-GCAAGTGGTATTCTTC- 1138 consensus_13301#1 TCCCGGAAGGGCTGAGGACTCTAGGGGAAGGCGTTTCGGAAGCCGAGATAGCCGTCGCGG 467 * * * ** ** * * * ** consensus_13301#2 CTTCCAGCTTCAAGTCATCCCACTACACTATTCAAGATTGGAGATGAAGTCCTCCCATTA 142 consensus_13301#3 CTTCCAGCTTCAGCTCATCC-ACTACACTATTCA-GATTGGAGATGAAGTCCTCCC-TTA 95 consensus_13301#0 CTTCCAGCTTCAG-TCATGCCACTACACTATTCA-GATTGGAGATGAAGTCCTCCC-TTA 1195 consensus_13301#1 AATGTAACCTGGG--CCTTGTGCTTC-CTATGCCCACTAAGCTACTGTACCGTTTC--TG 522 * * * * * * ** * **** * * * * * * * * consensus_13301#2 CACATG-CAACT--ATGGCAGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCT 199 consensus_13301#3 CACATGGCAACT--ATG-CGCCCATG-CAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCT 151 consensus_13301#0 CACATG-CAACT--ATGGCGGCCATGGCAAGTGTCCTCTCCTGAGGTGCGGCGAGGAGCT 1252 consensus_13301#1 CAACGGCCAGCTGCACATTGGCCGCGGCGAG-GAGGTCTCGTACGGCGTTATGGGAGGCT 581 ** * ** ** * ** * * ** * **** * ** * * * *** consensus_13301#2 GT-------TTGTCTATGGGTGTTCCATA---TCAGCAGCACTGGAGCCTGGATCCAGTC 249 consensus_13301#3 GT-------TTGTCTATGGGTGTTCCATA---TC-GCAGCACTGGAGCCTGGATCC-GTG 199 consensus_13301#0 GT-------TTGTCTATGGGTGTTCCATA---TCGGCAGCACTGGAGCCTGGATCC-GTG 1301 consensus_13301#1 ATGATTATGTTCACCAGAGGTATACCGTGCGCTTGCTACCGCTCGCGCACCATGCTGTTC 641 * ** * * *** * ** * * * * ** * ** * * consensus_13301#2 ATGGGCAACTTGACAGC-TTGTTCCTTGGAGGTTTGGTCA-CCTAGAGGAAGCCACTTTT 307 consensus_13301#3 ATGGGCAACTTGAC-GC-TTGTTCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTA 257 consensus_13301#0 ATGGGCAACTTGAC-GC-TTGTCCCTTGGAGGTGTGGTCAGCCTAGAGGAAGCCCTTTTA 1359 consensus_13301#1 AGAAAAACTCAAACTACATTGTAGTTGCGACGAGTTGTT--TTGGGGAGAAGATATTTCT 699 * * ** * **** * ** * * ** * **** ** consensus_13301#2 ATTCCGACATAGCTCCATTTCCCTCTACACCCGCACTGACTACATCTTCTGAAGAATTGG 367 consensus_13301#3 TTGCCGACATAGCTCC-TTTCCCTCTGCACCCGC-CTGACTACATCTTCTGAAGAATTGG 315 consensus_13301#0 TTGCCGACATAGCTCC-TTTCCCTCTGCACCCGC-CTGACTACATCTTCTGAAGAATTGG 1417 consensus_13301#1 TCTTGATTGTGCGAGTGGCCGTCTTTATGTCGGCACCAAGTAT-TGGAATGAAGAAAGAG 758 * ** * * ** * * ** * ******* * consensus_13301#2 AAGCTGGTTCATC-AAACATGCATCCAGCTTGATGCTAATTCTTGTTAGAGC--CCTTTT 424 consensus_13301#3 AAGCTGGTCCATCCAAGCATGCATGCAG-TTGAGGCTAATTCTTGCTAGAGCGCCCTTGT 374 consensus_13301#0 AAGCTGGTCCATCAAAGCATGCATGCAG-TTGAGGCTAATTCTTGCTAGAGCG-CCTTGT 1475 consensus_13301#1 AAATCATGGCAT----GCGTGCCAAAAG--CGACAATAAGGCTCGCTGTGGATGATGATC 812 ** *** * *** ** ** *** ** * * * consensus_13301#2 TGGAAATTTTCCTGGATATATTTCTGGTACCATCAGCTCTCGAA--TATTTTCT--ACAA 480 consensus_13301#3 TGGAAATTTTCCTGGATATATTTTTG-TACGTGCAGCTCTCGGAATTGTTGTCTTGACAA 433 consensus_13301#0 TGGAAATTTTCCTGGATATATTTTTG-TACGTGCAGCTCTCGGAATTGTTGTCTTGACAA 1534 consensus_13301#1 ATGGCATGCCTCAAGATGGATTTCTGCTGTGGTTGGAAGAGCACCTTAGTCGCCTACAGG 872 * ** * *** **** ** * * * * * consensus_13301#2 -TGACGAAATTCTCATG---ACTTGA-----ATATATACACACA---CAC-----TACAC 523 consensus_13301#3 GTGACGAAAGTCTCATG---AGCTGTGAATTATATATACACACA---CACA-CA-CACAC 485 consensus_13301#0 GTGACGAAAGTCTCATG---AGCTGTGAATTATATATACACACA---CACA-CAACACAC 1587 consensus_13301#1 ATGGCTTGATCAAGGTGCAGAGTTGTAAATTCCCAATGCTGGCAAGGCATATCAGTTTGT 932 ** * * ** * ** ** * ** ** consensus_13301#2 ACTTAG-------------------------CCAT--ACATGATTTCC---TTTCTAATC 553 consensus_13301#3 TTTTCG-------------------------CAGTG-ACATGATGTTCCGTTTGTTAATC 519 consensus_13301#0 TTTTCGGCAGTGACATGATGTTACTTTTCGGCAGTG-ACATGATGTTCCGTTTGTTAATG 1646 consensus_13301#1 ATCCAGTACAACTCCCTTACTGTTCGTCGGCAAGTATGCATGGTATCAAGGTTAGTAAAT 992 * * **** * * ** *** consensus_13301#2 -GGCTTGCTTGAAAAAA-A----------------------------------------- 570 consensus_13301#3 CGGCTTGCTTGCTTCTG-ATAGCTTGACAAAA---------------------------- 550 consensus_13301#0 CGGCTTGCTTGCTTCT-------------------------------------------- 1662 consensus_13301#1 TGGCTTTTCTGTTAGTTTATTGCCATGCTTAATATGCTGATTGCATTGCGAGGGTAATTG 1052 ***** ** consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 ------------------------------------------------------------ consensus_13301#1 AATCTATTTTGAAGCACATAGCTAGCCTACTGAAAGTTTTTTTGCTGTTTTATATTTAAA 1112 consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 ------------------------------------------------------------ consensus_13301#1 GATTAGATTTTGCTGTTTTATGTTTAATGATGAGCGTCATCGATGTATGATGATGGGGGC 1172 consensus_13301#2 ------------------------------------------------------------ consensus_13301#3 ------------------------------------------------------------ consensus_13301#0 ------------------------------------------------------------ consensus_13301#1 TCTGACCCCTGTTCTTCTCCCATAAAAGCATTTTGAAATCTAAAAGTTTGGCTGGTACTG 1232 consensus_13301#2 ----- consensus_13301#3 ----- consensus_13301#0 ----- consensus_13301#1 AGTGC 1237 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||