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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1869 fasta sequence
[GGACGCGCCGGCGTCGGGCATCACGGTCGTGTCGAGACAGGACGTGCGCCCGGACGGCGCTTCGGCGGTCGGGGACCTCACGCTGTCCGTCTCCGACCTGCCCATGCTGTCGTGCCACTACATCCAGAAGGGCCTCTTCTTCCCCGCCCCCGACGTGCCCATGGCTTCCCTGGTTTCGTTGCTCATGTCTTCGCTGTCTCGGGCGCTCGCCATCTTCCCGACCCTCGCCGGCCGCCTTGTCACGCTCCCCGATGATCGCGTCGTCATCCGCTGCAACGACGCCGGCGTCGAGTTCCGCCACGCCGTCGCGCCCAACCTGTCGCTGGATGACTTCATCGTGCCCGACGCCGACGTCCCGACCAAGCTGACCAAGGACCTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGCCCGCTCACGTCGTTCCAGGTCACCGTGCTCGGCGACGGCGCCGTGTTCATCGGCATCGTCGCGAACCACGCCGTGGTGGACGGGACCTCCTTTTGGCACTTCTTTAATACATGGGCCGCCCTTTGCCGTGGCGCGTCACCCAAGCTGCCGGACTTCCGCCGCAGCTTTTTTGGCGAGTCAACCGCCGTCCTCCGCTTTCCAGGAGGCGTGGGCCCCGCCGTGACCTTCGACGCGGACGCGCCTCTCCGCGAGCGCGTCTTTCACTTCAGCGCGGATGCGATTCGCGAGCTCAAGGCAATCACTAACCGTCGCCCGAGCGGCGGTCAAGACGCCGAGGTCTACGGCAAGATGGCGCACGATCGGAAGAATCCCGAAGGGCTCAGTGCGATCTCGTCGTTCCAGTCACTGTGCGCGCAGATATGGCTCTCGGTGACGCGCGCGCGGCAGCGTCTGGCGCCCGACGCGACGAGCACGTTCCGCATGGCGGTGAACTGCCGGCACAGGCTGCGCCCGGCGATCTCCCCTGTGTACTTCGGCAACGCCATCCAGAGCGCAGCAACCACGGCCACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAAGCTCAACGCGAGCCTGGCGGCGTACGACGACGGCGCGATACGCCGCGCCGCGGCGGCGT-GGC-AGGGCGCTCCCCGGTGCTTCCCGCTGGGCAACCCGGACGGCGCGGTGATCACGATGGGGAGCTCGAACCGGTTCCCCATGTATGAGGGCAACGACTTCGGGTGGGGCCGCCCCCTCGCGGTGCGGAGCGGCCGCGCCAACAAGTTCGATGGCAAGATGTCGGCGTTCCCTGCCCGCGCCGGGGACGGCAGCGTGGACATCGAGGTGTGCCTCGCCCCCGACACCATGGCGGCGCTGCTCCGCGACAGCGAGTTCATGCAGTTCGTGTCGTGATCGTTCCGCCAGTGCGTGCGCGAGCGCGCGCGCGACTATTGGTCCATCGTGACACACATGCCGTTGCGCTGCGGCTTTGCGTCCGTTCCTGCCCATAGTTTGGTCCTTTGGTGCTAAGATAATGTATCCGTGTTCTGGTTGTGCAGTGCCAGCGTGCCGTGGCAGTAGTAGACAGTGGTAACTAGTAGTAGTACTTGGATTGACTAGCTGTTACTATTACTTGTAACTACTCCAGCAAGCATTGGCGCGTTGCAGGGGGGATGGAGCTCGTGAAACTGCTTGATTGCTAAAGTCTTCCGGGCGTTCAAGTACGATGAACCGATTAATTTGCGTTTGATTAGGATGGATTTACCTTTTCCTTAGGACAGTCTCAACCCATGATGTGCATAAGTAGTGTCTATGGTGCTGTGTCAATAAGACATCACAATAGAAACTGCATTCTACAACCACCATGGTTGGTTTTTTAAAGTGGGCCATTAATAAATACAACATCTCTCTTC]
[+] EMBL AK070440 [GGACGCGCCGGCGTCGGGCATCACGGTCGTGTCGAGACAGGACGTGCGCCCGGACGGCGCTTCGGCGGTCGGGGACCTCACGCTGTCCGTCTCCGACCTGCCCATGCTGTCGTGCCACTACATCCAGAAGGGCCTCTTCTTCCCCGCCCCCGACGTGCCCATGGCTTCCCTGGTTTCGTTGCTCATGTCTTCGCTGTCTCGGGCGCTCGCCATCTTCCCGACCCTCGCCGGCCGCCTTGTCACGCTCCCCGATGATCGCGTCGTCATCCGCTGCAACGACGCCGGCGTCGAGTTCCGCCACGCCGTCGCGCCCAACCTGTCGCTGGATGACTTCATCGTGCCCGACGCCGACGTCCCGACCAAGCTGACCAAGGACCTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGCCCGCTCACGTCGTTCCAGGTCACCGTGCTCGGCGACGGCGCCGTGTTCATCGGCATCGTCGCGAACCACGCCGTGGTGGACGGGACCTCCTTTTGGCACTTCTTTAATACATGGGCCGCCCTTTGCCGTGGCGCGTCACCCAAGCTGCCGGACTTCCGCCGCAGCTTTTTTGGCGAGTCAACCGCCGTCCTCCGCTTTCCAGGAGGCGTGGGCCCCGCCGTGACCTTCGACGCGGACGCGCCTCTCCGCGAGCGCGTCTTTCACTTCAGCGCGGATGCGATTCGCGAGCTCAAGGCAATCACTAACCGTCGCCCGAGCGGCGGTCAAGACGCCGAGGTCTACGGCAAGATGGCGCACGATCGGAAGAATCCCGAAGGGCTCAGTGCGATCTCGTCGTTCCAGTCACTGTGCGCGCAGATATGGCTCTCGGTGACGCGCGCGCGGCAGCGTCTGGCGCCCGACGCGACGAGCACGTTCCGCATGGCGGTGAACTGCCGGCACAGGCTGCGCCCGGCGATCTCCCCTGTGTACTTCGGCAACGCCATCCAGAGCGCAGCAACCACGGCCACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAAGCTCAACGCGAGCCTGGCGGCGTACGACGACGGCGCGATACGCCGCGCCGCGGCGGCGT GGC AGGGCGCTCCCCGGTGCTTCCCGCTGGGCAACCCGGACGGCGCGGTGATCACGATGGGGAGCTCGAACCGGTTCCCCATGTATGAGGGCAACGACTTCGGGTGGGGCCGCCCCCTCGCGGTGCGGAGCGGCCGCGCCAACAAGTTCGATGGCAAGATGTCGGCGTTCCCTGCCCGCGCCGGGGACGGCAGCGTGGACATCGAGGTGTGCCTCGCCCCCGACACCATGGCGGCGCTGCTCCGCGACAGCGAGTTCATGCAGTTCGTGTCGTGATCGTTCCGCCAGTGCGTGCGCGAGCGCGCGCGCGACTATTGGTCCATCGTGACACACATGCCGTTGCGCTGCGGCTTTGCGTCCGTTCCTGCCCATAGTTTGGTCCTTTGGTGCTAAGATAATGTATCCGTGTTCTGGTTGTGCAGTGCCAGCGTGCCGTGGCAGTAGTAGACAGTGGTAACTAGTAGTAGTACTTGGATTGACTAGCTGTTACTATTACTTGTAACTACTCCAGCAAGCATTGGCGCGTTGCAGGGGGGATGGAGCTCGTGAAACTGCTTGATTGCTAAAGTCTTCCGGGCGTTCAAGTACGATGAACCGATTAATTTGCGTTTGATTAGGATGGATTTACCTTTTCCTTAGGACAGTCTCAACCCATGATGTGCATAAGTAGTGTCTATGGTGCTGTGTCAATAAGACATCACAATAGAAACTGCATTCTACAACCACCATGGTTGGTTTTTTAAAGTGGGCCATTAATAAATACAACATCTCTCTTC]
[+] EMBL C73720 [ CGACGAGCACGTTCCGCATGGCGGTGAACTGCCGGCACAGGCTGCGCCCGGCGATCTCCCCTGTGTACTTCGGCAACGCCATCCAGAGCGCA NAACCACGGCCACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAAGCTCAACGCGAGCCTGGCGGCGTACGACGACGGCGCGATACGCCGCGCCGCGG GNCGTNGGCAAGGGCGCTCCCCGGTGCTTCCCGTTGGGCAACCCGGACGGCGCGGTGATCACGATGGGGAGTTCGAACCGGTT CCCATGTATGAGGG AACGNTTTCGGGTTGGGCCG CCCCTCGCGGTTCGGAGGGGCCGCaaccgn ]
consensusID : consensus_13304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1868 fasta sequence
[CTTCTACGACGCCGGCTCGCCCCTCGCCCCTCGCTTGAACGCTTAGAGATACAGTTTTTG-CCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGTGGAGGCTGCCTCGGCTGCGCCGGCGACGGTGGTCGTTCCGCTGACGCAGACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC-TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG-CCCTCGCC-GGCCGGCT-CG-TC-ACGCT-GGATG-AT-GGCCGCATC-GTC-AT-CCGGTGCGACGGCGTGGCCG-TTGAGTTCTACC-ACGCGGTCGCGCCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACGAAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACCTCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCACGCCGTCGTGGACGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGCGGCACGCCGGTCCAGCCGCCGGACTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTCATCCGCTTCCCCGGTGGCGCGGGTCCTGCCGTCACCTTCGACGCCGACGCGCCCCTCCGCGAGCGAGTCCTCCATTTCAGCGCCGCCGCCATTCGCGAGCTGAAGGCCAAGGCCAACCAGTGGAAAAGATCCGACAAATTTGCCGAGGCTAACGGGAAGCATGTGGATGAAACGAAGGCTCATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCGGTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGACGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAGAGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCGGAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACGATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCGATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGAGTATCCGTTACTCTTCTGGTATTCCATCCATTAAGCGGTTGGCCAAGTTTGAACAGCCGCACAGAGAGTTGCTTTTAGGATCAAGTGGAGTCGTGCTCTGTTCCTTCCTCCCTGTTAGAAGTACTTGTCTTGTGAGTTCGATGGATAATTATTTGAGTACA]
[+] EMBL AK072009 [CTTCTACGACGCCGGCTCGCCCCTCGCCCCTCGCTTGAACGCTTAGAGATACAGTTTTTG CCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGTGGAGGCTGCCTCGGCTGCGCCGGCGACGGTGGTCGTTCCGCTGACGCAGACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG CCCTCGCC GGCCGGCT CG TC ACGCT GGATG AT GGCCGCATC GTC AT CCGGTGCGACGGCGTGGCCG TTGAGTTCTACC ACGCGGTCGCGCCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACGAAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACCTCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCACGCCGTCGTGGGCGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGCGGCACGCCGGTCCAGCCGCCGGGCTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTCATCCGCTTCCCCGGTGGCGCGGGTCCTGCCGTCACCTTCGACGCCGACGCGCCCCTCCGCGAGCGAGTCCTCCATTTCAGCGCCGCCGCCATTCGCGAGCTGAAGGCCAAGGCCAACCAGTGGAAAAGATCCGACAAATTTGCCGAGGCTAACGGGAAGCATGTGGATGAAACGAAGGCTCATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCGGTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGACGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAGAGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCGGAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACGATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCGATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGAGTATCCGTTACTCTTCTGGTATTCCATCCATTAAGCGGTTGGCCAAGTTTGAACAGCCGCACAGAGAGTTGCTTTTAGGATCAAGTGGAGTCGTGCTCTGTTCCTTCCTCCCTGTTAGAAGTACTTGTCTTGTGAGTTCGATGGATAATTATTTGAG ]
[+] EMBL AK107567 [ TTCTACGACGCCGGCTCGCCCCTCGCCCCTCGCTTGAACGCTTAGAGATACAGTTTTTG CCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGTGGAGGCTGCCTCGGCTGCGCCGGCGACGGTGGTCGTTCCGCTGACGCAGACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG CCCTCGCC GGCCGGCT CG TC ACGCT GGATG AT GGCCGCATC GTC AT CCGGTGCGACGGCGTGGCCG TTGAGTTCTACC ACGCGGTCGCCCCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACGAAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACCTCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCACGCCGTCGTGGACGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGCGGCACGCCGGTCCAGCCGCCGGACTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTCATCCGCTTCCCCGGTGGCGCGGGTCCTGCCGTCACCTTCGACGCCGACGCGCCCCTCCGCGAGCGAGTCCTCCATTTCAGCGCCGCCGCCATTCGCGAGCTGAAGGCCAAGGCCAACCAGTGGAAAAGATCCGACAAATTTGCCGAGGCTAACGGGAAGCATGTGGATGAAACGAAGGCTCATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCGGTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGATGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAGAGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCGGAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACGATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCGATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGAGTATCCGTTACTCTTCTGGTATTCCATCCATTAAGCGGTTGGCCAAGTTTGAACAGCCGCACAGAGAGTTGCTTTTAGGATCAAGTGGAGTCGTGCTCTGTTCCTTCCTCCCTGTTAGAAGTACTTGTCTTGTGAGTTCGATGGATAATTATTTGAGTACA]
[+] EMBL AU222843 [ CGCCCCTCGCTTGAACGCTTAGAGATACAGTTTTTGCCCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGTGGAGGCTGCCTCGGCTGCGCCGGCGACGGTGGTCGTTCCGCTGACGCAGACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG CCCTCGCC GGCCGGCT CG TC ACGCT GGATG AT GGCCGCATC GTC AT CCGGTGCGACGGCGTGGCCG TTGAGTTCTACCTCCGCGGNCGGCCCCGTTCTGTng ]
[+] EMBL AU029721 [ AACGCTTAGAGATACAGTTTTTG CCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGTGGAGGCTGCCTCGGCTGCGCGGACGACGGTGGTCGTTCCGCTGACGCAGACGCTCTGCGCGAATGCNCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCCTTCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTGCCCCTCGCCGGGCCGGGTNCGTTCAAGGCTGGGATGAATGGGCCGCATCGGTCAATCCCGGTGCGANGGCGTGGCCGTTTGAGTTCTAa ]
[+] EMBL CB649320 [ ACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG CCCTCGCC GGCCGGCT CG TC ACGCT GGATG AT GGCCGCATC GTC AT CCGGTGCGACGGCGTGGCCG TTGAGTTCTACC ACGCGGTCGCGCCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACGAAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACCTCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCACGCCGTCGTGGACGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGCGGCACGCCGGTCCAGCCGCCGGACTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTCATCCGCTTCCCCGGTGGCGCGGGTCCTGCCGTCACCTTCGACGCCGACGCGCCCCTCCGCGAGCGAGTCCTCCATTTCAGCGCCGCCGCCATTCGCGAGCTGAAGGGCCAGGCCAACCAGTGGAAAAGATCCGACAAATTTGCCG ]
[+] EMBL CB647388 [ ACGCTCTGCGCGAATGCGCCTGCGACGAGCGTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTCAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGGCTCTTCTTCCCGCCCCCTGGCGTGCCGATCGCCTCCC TCGTGTCGTCGCTCGTGTGCGCGCTCTCCCGGGCGCTCGCGGTGTTCCCTG CCCTCGCC GGCCGGCT CG TC ACGCT GGATG AT GGCCGCATC GTC AT CCGGTGCGACGGCGTGGCCG TTGAGTTCTACC ACGCGGTCGCGCCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACGAAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACCTCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCACGCCGTCGTGGACGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGCGGCACGCCGGTCCAGCCGCCGGACTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTCATCCGCTTCCCCGGTGG ]
[-] EMBL CB649321 [ CAACCAGTGGAAAAGATCCGACAAATTTGCCGAGGCTAACGGGAAGCATGTGGATGAAACGAAGGCTCATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCGGTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGACGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAGAGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCGGAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACGATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCGATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGA ]
[-] EMBL CB647389 [ GTGGATGAAACGAAGGCTCATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCGGTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGACGTTCCGCATGGCGGTGAACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAGAGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCGGCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCGGAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACGATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCGATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGA ]
[+] EMBL AU029722 [ CCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGCCAGGCTGGGGACGGCANCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGCCTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGACGCACGTATTCTGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGATTATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGGATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGAGTATCCGTTACTNTTNTGGTAaaaa ]
consensusID : consensus_13304#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence
[ANACCGCCTCGGTNGAAATCNCACATATACTTGCGTTTGNCGCNCTAGTTNATCTCTATTGCTTTTGGATGATGGGTGGGAAGCTGCCTCCATTGGGCCGGCAACGGTGGTCGTTCCAGTAGACGCAGACACTCTGCGCGAATGCGCCTGCGANGAGCGTCACCGTCGTTTCNAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTNAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATNCAGAAGGGGGCTCTTTCTTCCCGCCCCATGGCGGTGCCGATCGCCCTCCCTCGAGTAGGCCGCTCGNGTGCGCGCTTCTCCNGGGGCGCTCGGAGGTGTTCCNTGGCCCTCGC]
[+] EMBL AU197667 [ANACCGCCTCGGTNGAAATCNCACATATACTTGCGTTTGNCGCNCTAGTTNATCTCTATTGCTTTTGGATGATGGGTGGGAAGCTGCCTCCATTGGGCCGGCAACGGTGGTCGTTCCAGTAGACGCAGACACTCTGCGCGAATGCGCCTGCGANGAGCGTCACCGTCGTTTCNAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTNAAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATNCAGAAGGGGGCTCTTTCTTCCCGCCCCATGGCGGTGCCGATCGCCCTCCCTCGAGTAGGCCGCTCGNGTGCGCGCTTCTCCNGGGGCGCTCGGAGGTGTTCCNTGGCCCTCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13304#1 CTTCTACGACGCCGGCTCGCCCCTCGCCCCTCGCTTGAACGCTTAGAGATACA-GTTTTT 59
consensus_13304#2 ----------------------ANACCGCCTCGGTNGAAATCNCACATATACTTGCGTTT 38
consensus_13304#0 ------------------------------------------------------------
consensus_13304#1 GCCGCGCTAGTTGATCCCTCCTGCATTCGCACCATGGT--GGAGGCTGCCTCGGCTGCGC 117
consensus_13304#2 GNCGCNCTAGTTNATCTCTATTGCTTTTGGATGATGGGTGGGAAGCTGCCTCCATTGGGC 98
consensus_13304#0 ------------------------------------------------------------
consensus_13304#1 CGGCGACGGTGGTCGTTCCGCT-GACGCAGACGCTCTGCGCGAATGCGCCTGCGACGAGC 176
consensus_13304#2 CGGCAACGGTGGTCGTTCCAGTAGACGCAGACACTCTGCGCGAATGCGCCTGCGANGAGC 158
consensus_13304#0 -----------------------------------------GGACGCGCCGGCGTCGGGC 19
* * ***** *** * **
consensus_13304#1 GTCACCGTCGTTTCGAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTC 236
consensus_13304#2 GTCACCGTCGTTTCNAAGCAGACCGTTCGGCCCGACGGCGCGTCGGCGGTTGGAGACGTN 218
consensus_13304#0 ATCACGGTCGTGTCGAGACAGGACGTGCGCCCGGACGGCGCTTCGGCGGTCGGGGACCTC 79
**** ***** ** * *** *** ** ** ******** ******** ** *** *
consensus_13304#1 AAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATCCAGAAGGGG--CTCT 294
consensus_13304#2 AAGCTCTCGGTCTCCGACATGCCGATGCTGTCGTGCCACTACATNCAGAAGGGGGCTCTT 278
consensus_13304#0 ACGCTGTCCGTCTCCGACCTGCCCATGCTGTCGTGCCACTACATCCAGAAGGGC--CTCT 137
* *** ** ********* **** ******************** ******** *
consensus_13304#1 TCTTCCCGCCCCCTGGCG-TGCCGATCGCC-TCCCTCGTGTCG-TCGCTCGTGTGCGCGC 351
consensus_13304#2 TCTTCCCGCCCCATGGCGGTGCCGATCGCCCTCCCTCGAGTAGGCCGCTCGNGTGCGCGC 338
consensus_13304#0 TCTTCCCCGCCCCCGACG-TGCCCATGGCT-TCCCTGGTTTCG-TTGCTCATGTCTTCGC 194
******* *** * ** **** ** ** ***** * * * **** ** ***
consensus_13304#1 TCTCCCGGG--CGCTCGC-GGTGTTCCCTG-CCCTCGCCGGCCGGCTCGTCACGCTGGAT 407
consensus_13304#2 TTCTCCNGGGGCGCTCGGAGGTGTTCCNTGGCCCTCGC---------------------- 376
consensus_13304#0 TGTCTCGGG--CGCTCGC-CATCTTCCC-GACCCTCGCCGGCCGCCTTGTCACGCTCCCC 250
* * ** ****** * **** * *******
consensus_13304#1 GATGGCCGCATCGTCATCCGGTGCGACGGCGTGGCCGTTGAGTTCTACCACGCGGTCGCG 467
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 GATGATCGCGTCGTCATCCGCTGCAACGACGCCGGCGTCGAGTTCCGCCACGCCGTCGCG 310
consensus_13304#1 CCCGCTCTGTCGCTGGGAGACTTCCTCGTGCCCAACGCCGACGTGCCGACCAGGCTGACG 527
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 CCCAACCTGTCGCTGGATGACTTCATCGTGCCCGACGCCGACGTCCCGACCAAGCTGACC 370
consensus_13304#1 AAGGATTTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGTCCGCTCACC 587
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 AAGGACCTGTTCCCCATGGACCGCACCGTGAGCTACGACGGCCACCGCCGCCCGCTCACG 430
consensus_13304#1 TCGTTCCAGCTCACCGTGCTCGGCGATGGAGCTGTCTTCGTCGGCTTCGTCGCTAACCAC 647
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 TCGTTCCAGGTCACCGTGCTCGGCGACGGCGCCGTGTTCATCGGCATCGTCGCGAACCAC 490
consensus_13304#1 GCCGTCGTGGACGGCACCTCCTTCTGGCACTTCTTTAACACGTGGGCAGGTCTCTGCCGC 707
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 GCCGTGGTGGACGGGACCTCCTTTTGGCACTTCTTTAATACATGGGCCGCCCTTTGCCGT 550
consensus_13304#1 GGCACGCCGGTCCAGCCGCCGGACTTGCGCCGGAACTTCTTTGGCGACTCCACGGCCGTC 767
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 GGCGCGTCACCCAAGCTGCCGGACTTCCGCCGCAGCTTTTTTGGCGAGTCAACCGCCGTC 610
consensus_13304#1 ATCCGCTTCCCCGGTGGCGCGGGTCCTGCCGTCACCTTCGACGCCGACGCGCCCCTCCGC 827
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 CTCCGCTTTCCAGGAGGCGTGGGCCCCGCCGTGACCTTCGACGCGGACGCGCCTCTCCGC 670
consensus_13304#1 GAGCGAGTCCTCCATTTCAGCGCCGCCGCCATTCGCGAGCTGAAGGCCAAGGCCAACCAG 887
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 GAGCGCGTCTTTCACTTCAGCGCGGATGCGATTCGCGAGCTCAAGGCAATCACTAACCGT 730
consensus_13304#1 TGGAAAAGATCCGACAAATTTGCCGAGGCTAACGGGAAGCATGTGGATGAAACGAAGGCT 947
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 CGCCCGAGCGGCGGTCAAGACGCCGAGGTCTACGGCAAGATGGCGCACGATCGGAAGAAT 790
consensus_13304#1 CATGGCGGTTACAGAGAGATCTCGTCGTTCCAATCGCTGTGCGCGCATATCTGGAGGGCG 1007
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 CCCGAAGGGCTCAGTGCGATCTCGTCGTTCCAGTCACTGTGCGCGCAGATATGGCTCTCG 850
consensus_13304#1 GTGACGCGATCCCGGCGGCTGCTGGCGGCCGACGCGACCACGACGTTCCGCATGGCGGTG 1067
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 GTGACGCGCGCGCGGCAGCGTCTGGCGCCCGACGCGACGAGCACGTTCCGCATGGCGGTG 910
consensus_13304#1 AACTGCCGGCACCGCCTGCGCCCGGCGATCTCCCCGCTCTACTTCGGCAACGCCATCCAG 1127
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 AACTGCCGGCACAGGCTGCGCCCGGCGATCTCCCCTGTGTACTTCGGCAACGCCATCCAG 970
consensus_13304#1 AGCGTAGCCACAACCGCGACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCG 1187
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 AGCGCAGCAACCACGGCCACGGTGGCCGAGCTGGCGTCCAACGACCTGCGGTGGGCGGCG 1030
consensus_13304#1 GCCAGGCTGAACGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGCCGGGCCGCGGCG 1247
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 GCCAAGCTCAACGCGAGCCTGGCGGCGTACGACGACGGCGCGATACGCCGCGCCGCGGCG 1090
consensus_13304#1 GAGTGGGAGGCCGCGCCGCGGTGCTTCCCGCTGGGCAACCCCGACGGCGCGGCGCTCACG 1307
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 GCGTGGCAGGGCGCTCCCCGGTGCTTCCCGCTGGGCAACCCGGACGGCGCGGTGATCACG 1150
consensus_13304#1 ATGGGGAGCTCGCCCCGGTTCCCTATGTACGACGGCAACGACTTCGGGTGGGGCAGGGCG 1367
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 ATGGGGAGCTCGAACCGGTTCCCCATGTATGAGGGCAACGACTTCGGGTGGGGCCGCCCC 1210
consensus_13304#1 ATCGCCGTGCGGAGCGGGCGCGCCAACAAGTTCGACGGCAAGATGTCGGCGTTCCCGAGC 1427
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 CTCGCGGTGCGGAGCGGCCGCGCCAACAAGTTCGATGGCAAGATGTCGGCGTTCCCTGCC 1270
consensus_13304#1 CAGGCTGGGGACGGCAGCGTCGACGTCGAGTTTTGCCTCGCGCCCGACACCATGGCCCGC 1487
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 CGCGCCGGGGACGGCAGCGTGGACATCGAGGTGTGCCTCGCCCCCGACACCATGGCGGCG 1330
consensus_13304#1 CTGCTCGGTGACCACGAGTTCTTGCAGTACGTGTCGCGTGCACCGTGAC-GCACGTATTC 1546
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 CTGCTCCGCGACAGCGAGTTCATGCAGTTCGTGTCGTGATCGTTCCGCCAGTGCGTGCGC 1390
consensus_13304#1 TGGTGTGGTGCAGTGAGCGAGGGGACGATCACGAGATGCGAGTTCCCCACATGACATGAT 1606
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 GAGCGCGCGCGCGACTATTGGTCCATCGTGACACACATGCCGTTGCGCTGCGGCTTTGCG 1450
consensus_13304#1 TATCTCTCTGGTGGTGATGCAGATTGCAGTAGCCGCTGGACACATACGTTGCTGTGCTGG 1666
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 TCCGTTCCTGCCCATAGTTTGGTCCTTTGGTGCTAAGATAATGTATCCGTGTTCTGGTTG 1510
consensus_13304#1 ATTGGTGTATGCTTGCAAAAATATCTAAGCTATATATCCGAGTATCCGTTACTCTTCTGG 1726
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 TGCAGTGCCAGCGTGCCGTGGCAG-TAGTAGACAGTGGTAACTAGTAGTAGTACTTGGAT 1569
consensus_13304#1 TATTCCATCCATTAAGCGGTTGGCCAAGTTTGAACAGCCGCACAGAGAGTTGCTTTTAGG 1786
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 TGACTAGCTGTTACTATTACTTGTAACTACTCCAGCAAGCATTGGCGCGTTGCAGGGGGG 1629
consensus_13304#1 ATCAAGTGGAGTCGTGCTCTGTTCCTTCCTCCCTGTTAGAAGTACTTGTCTTGTGAGTTC 1846
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 ATGGAGCTCGTGAAACTGCTTGATTGCTAAAGTCTTCCGGGCGTTCAAGTACGATGAACC 1689
consensus_13304#1 GATGGATAATTATTTGAGTACA-------------------------------------- 1868
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 GATTAATTTGCGTTTGATTAGGATGGATTTACCTTTTCCTTAGGACAGTCTCAACCCATG 1749
consensus_13304#1 ------------------------------------------------------------
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 ATGTGCATAAGTAGTGTCTATGGTGCTGTGTCAATAAGACATCACAATAGAAACTGCATT 1809
consensus_13304#1 ------------------------------------------------------------
consensus_13304#2 ------------------------------------------------------------
consensus_13304#0 CTACAACCACCATGGTTGGTTTTTTAAAGTGGGCCATTAATAAATACAACATCTCTCTTC 1869
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||