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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 725 fasta sequence
[TCGCCTTTTTCTGAGACTCAGAGCGGCGGCGAGCGCCGGCCGGTCGCCG-GCGGAGGAGTTGGTGTGGAGAGGGCGGGGAGATGGTTGTCCGGATCAGGCTGGCGCGGTTCGGCTGCCGGAACAGGCCCTTCTACCGGCTCATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACGACCCGCTCCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACCTCCAATGCTAGCTATGGCCCACAAGGGTGGGCCTCGCGACAGACGTCCTATTGATCCCATGACTGGGCGCCCCTTAGACCTTGAGGGTGTCACAGTTGTTGATGATTCTCATACTCCCAAGAGTGGTGATGGAGCACCTAACGAGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTCTGATGGGTGTTTGAGCCTGTGACTAGTATGTTGTGACCTTTCTTGCTGACCGGCTTTATTGATCTATGCTCCTGTCATCTATTCTCAGGAACACGAACCTGGAAACATGAGTTGTTCTTTTTGATAAAATTTGTATGTTGTGTTCCAAAAAAAAA]
[+] EMBL AK064304 [TCGCCTTTTTCTGAGACTCAGAGCGGCGGCGAGCGCCGGCCGGTCGCCG GCGGAGGAGTTGGTGTGGAGAGGGCGGGGAGATGGTTGTCCGGATCAGGCTGGCGCGGTTCGGCTGCCGGAACAGGCCCTTCTACCGGCTCATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACGACCCGCTCCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACCTCCAATGCTAGCTATGGCCCACAAGGGTGGGCCTCGCGACAGACGTCCTATTGATCCCATGACTGGGCGCCCCTTAGACCTTGAGGGTGTCACAGTTGTTGATGATTCTCATACTCCCAAGAGTGGTGATGGAGCACCTAACGAGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTCTGATGGGTGTTTGAGCCTGTGACTAGTATGTTGTGACCTTTCTTGCTGACCGGCTTTATTGATCTATGCTCCTGTCATCTATTCTCAGGAACACGAACCTGGAAACATGAGTTGTTCTTTTTGATAAAATTTGTAT ]
[+] EMBL AU029873 [ CTCAGAGCGGCGGCGAGCG CGGCCGGTCGCCGNGGNAAGGAGTTGGTGTGGAGAGGGCGGGGAGATGGTTGTCCGGATCAGGCTGGCGCGGTTCGGCTGCCGGAACAGGCCCTTCTACCGGCTCATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACGACCCGCTCCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGC ]
[+] EMBL CF334286 [ GGCGGAGAGATGGTTGTCCGGATCATGCTGGCGCGGTTCGGCTGCCGGAACAGGCCCTTCT ]
[-] EMBL CF281214 [ CCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACCTCCAATGCTAGCTATGGCCCACAAGGGTGGGCCTCGCGACAGACGTCCTATTGATCCCATGACTGGGCGCCCCTTAGACCTTGAGGGTGTCACAGTTGTTGATGATTCTCATACTCCCAAGAGTGGTGATGGAGCACCTAACGAGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTCTGATGGGTGTTTGAGCCTGTGACTAGTATGTTGTGACCTTTCTTGCTGACCGGCTTTATTGATATATGCTCCTGTCATCTATTCTCAGGAACACGAACCTGGAAACATGAGTTGTTCTTTTTGATAAAATTTGTATGTTGTGTTCCAAAAAAAAA]
[-] EMBL AU165103 [ AGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTTTGATGGGTGTTTGAGCCTGTGACTAGTATGTTGTGACCTTTCTTGCTGACCGGCTTTATTGATCTATGCTCCTGTCAaaaaa ]
consensusID : consensus_13307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 664 fasta sequence
[TGCTCCCACAGGAGTGAACACGACGCGACCCGAGCCGGAGAAGGGGAAGGGAAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGGCTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACAACCCGCTCCCCGGGAAGGATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCG-ATCCTTTTTCGAGCTGGGCTTCTG-CTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGTGGACCTCGTGATAGGCGCCCAATTCATCCGATGACTGGGCGCCCCTTGGATCTTGAGGGTGTCACGGTTGTTGATGACTCCAATGTTCCCGAAGGTGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTTG-TTTGTTGTGCCTCTGATAAGATCATGAGTACTGTACAATATGGAAACTTCCTAATC-ATGTAATCTTCCATTGTTTTCTAATAATTTAC-AAGGTCGTAGTGCTGCACTAAAAGTTAAAAAAAAAAAAAAAAA]
[+] EMBL AK064108 [TGCTCCCACAGGAGTGAACACGACGCGACCCGAGCCGGAGAAGGGGAAGGGAAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGGCTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACAACCCGCTCCCCGGGAAGGATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCGCATCCTTTTTCGAGCTGGGCTTCTGCCTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGTGGACCTCGTGATAGGCGCCCAATTCATCCGATGACTGGGCGCCCCTTGGATCTTGAGGGTGTCACGGTTGTTGATGACTCCAATGTTCCCGAAGGTGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTTG TTTGTTGTGCCTCTGATAAGATCATGTGTACTGTACAATATGGAAACTTCCTAATC ATGTAATCTTCCATTGTTTTCTAATAATTTAC AAGGTCGTAGTG ]
[+] EMBL OS0019A [ ACACGACGCGACCCGAGCCGGAGAAGGGGAAGGGAAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGGCTGGCGCGGTTCGGCTGCCGGAACC GCCGTTCTACCGGGTGATGGCCGCCGACAGCCGCTNCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACAACCCGCTNCCCGGGAAGGATGGTGGCAAGAGGATGGGGCTTAAATTCGACAGGGTCAAGTACTNGCTGTCTGTTGGTGCTNAGCCATCAGATCCTGTTCAang ]
[+] EMBL AU063508 [ TCCCCGGGAAGGATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCG ATCCTTTTTCGAGCTGGGCTTCTG CTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGTGGACCTCGTGATAGGCGCCCAATTCATCCGATGACTGGGCG CCCTTGGATCTTGAGGGTGTCACGGTTGTTGATGACTCCAATGTTCCCGAA GTGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTTG TTTGTTGTGCCTCTGATAAGATCATGAGTACTGTACAATATGG AACTTCCTAATC ATGTAATCTTCCATNGTTTTCTAATAATTTACAAAGGTCGTAGTGCTGCACTAAA ]
[+] EMBL C28776 [ CCCCGGGAAGGATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCG ATCCTTTTTCGAGCTGGGCTTCTG CTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGTGGACCTCGTGATAGGCGCCCAATTCATCCGATGACTGGGCG CCCTTGGATCTTGAGGGTGTCACGGTTGTTGATGACTCCAATGTTCCCGAAGTGGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTTGTTTTGTTGTGCCTCTGATAAGATCATGAGTACTGTACAATATGGAAACTTCCTAATCAATGTAATCTTCCATTGTTTTCTAATAAATTA ]
[+] EMBL OSC00193 [ GACCNCGTGATAGGCGCCCAATTCATCCGATGACTGGNCNCACCTTGGATCTTGAGGGTGTCACGGTTGTTGATGACTCCAATGTTCCCGAAGGTGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTTG TTTGTTGTGCCTCTGATAAGATCATGAGTACTGTACAATATGGAAACTTCCTAATC ATGTAATCTTCCATTGTTTTCTAATAATTTAC AAGGTCGTAGTGCTGCACTATGAGTTAAAAAAAAAAAAAAAAA]
consensusID : consensus_13307#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[GCGGCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGGCTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACAACCCGCTCCCCGGGAAGNATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCGCATCCTTTTTCGAGCTGGGCTTCTGCCTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGNTGGACCTCGTGATTAGGCGGCNATNNGTGTNCGNAGNGGGNANTNTCNGTGGNNAATTGGNAATGTTTTNNGGNATTGTGCCNGTNANTNCNNAANNTTGNGNNGATNNGGAATNNCGGNGNGNNCNGGNNNNNTATNTGGGGNCNNCTTT]
[+] EMBL OSC18811 [GCGGCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGGCTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGCTCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCTACTACAACCCGCTCCCCGGGAAGNATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGGTGCTCAGCCATCAGATCCTGTGCAGCGCATCCTTTTTCGAGCTGGGCTTCTGCCTCCACCTCCAATGCTAGCTATGGCTCGAAAGGGNTGGACCTCGTGATTAGGCGGCNATNNGTGTNCGNAGNGGGNANTNTCNGTGGNNAATTGGNAATGTTTTNNGGNATTGTGCCNGTNANTNCNNAANNTTGNGNNGATNNGGAATNNCGGNGNGNNCNGGNNNNNTATNTGGGGNCNNCTTT]
consensusID : consensus_13307#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[GCAAGCACCTCGAGGTCCTCGGCTTACTACGACCCGCTCCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACCTCCAATGCTAGCTATGGCCCACAAGGGTGGGCCTCGCGACAGACGTCCTATTGATCCCATGACTGGGCGCCCCTTAGACCTTGAGGGTGTCACAGTTGTTGATGATTCTCATACTCCCAAGAGTGGTGATGGAGCNCCTAACGAGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTCTGATGGGTGTTTGAGCCTGTGACTNGTATGTTGTGNNCTTTCTAAAAAAAAAAAAAAAAA]
[+] EMBL AU101466 [GCAAGCACCTCGAGGTCCTCGGCTTACTACGACCCGCTCCCCGGGAAGGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGGAGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACCTCCAATGCTAGCTATGGCCCACAAGGGTGGGCCTCGCGACAGACGTCCTATTGATCCCATGACTGGGCGCCCCTTAGACCTTGAGGGTGTCACAGTTGTTGATGATTCTCATACTCCCAAGAGTGGTGATGGAGCNCCTAACGAGGAGACAGCATAGATGAGGCATGATGATATATCTGTTTTAGCATATTGTGTGGTTTTGCAAGATTAAAAAGTACTGTTTGTGGCCTTTCTGATGGGTGTTTGAGCCTGTGACTNGTATGTTGTGNNCTTTCTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13307#0 ----------------------TCGCCTTTTTCTGAGACTCAGAGCGGCGGCGAGCGCCG 38
consensus_13307#3 ------------------------------------------------------------
consensus_13307#1 TGCTCCCACAGGAGTGAACACGACGCGACCCGAGCCGGAGAAGGGGAAGGGAAGGCGGCG 60
consensus_13307#2 ---------------------------------------------------------GCG 3
consensus_13307#0 GCCGGTCGCCGGCGGAGGAGTTGGTGTGGAGAGGGCGGGGAGATGGTTGTCCGGATCAGG 98
consensus_13307#3 ------------------------------------------------------------
consensus_13307#1 GCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGG 120
consensus_13307#2 GCGGCGGCGGCGGAGGAGGAGGAGGCGCGAGGGGAGGCGAGCATGGTGGTGCGGATCCGG 63
consensus_13307#0 CTGGCGCGGTTCGGCTGCCGGAACAGGCCCTTCTACCGGCTCATGGCCGCCGACAGCCGC 158
consensus_13307#3 ------------------------------------------------------------
consensus_13307#1 CTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGC 180
consensus_13307#2 CTGGCGCGGTTCGGCTGCCGGAACCGGCCGTTCTACCGGGTGATGGCCGCCGACAGCCGC 123
consensus_13307#0 TCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCT-ACTACGACCCGCTCCCCGGGAA 217
consensus_13307#3 -------------GCAAGCACCTCGAGGTCCTCGGCTTACTACGACCCGCTCCCCGGGAA 47
consensus_13307#1 TCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCT-ACTACAACCCGCTCCCCGGGAA 239
consensus_13307#2 TCCCCGCGCGACGGCAAGCACCTCGAGGTCCTCGGCT-ACTACAACCCGCTCCCCGGGAA 182
************************ ***** ****************
consensus_13307#0 GGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGG 277
consensus_13307#3 GGATGGTGGCAAGAGAATGGGGTTAAAATTCGACCGGGTGAAGTATTGGCTATCAGTTGG 107
consensus_13307#1 GGATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGG 299
consensus_13307#2 GNATGGTGGCAAGAGGATGGGGCTGAAATTCGACAGGGTCAAGTACTGGCTGTCTGTTGG 242
* ************* ****** * ********* **** ***** ***** ** *****
consensus_13307#0 AGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACC 337
consensus_13307#3 AGCACAGCCATCGGATCCTGTGGAGCGCATCCTCTACCGTGCTGGAATTCTACCTCCACC 167
consensus_13307#1 TGCTCAGCCATCAGATCCTGTGCAGCG-ATCCTTTTTCGAGCTGGGCTTCTGC-TCCACC 357
consensus_13307#2 TGCTCAGCCATCAGATCCTGTGCAGCGCATCCTTTTTCGAGCTGGGCTTCTGCCTCCACC 302
** ******** ********* **** ***** * ** ***** **** * ******
consensus_13307#0 TCCAATGCTAGCTATGGCCCACAAGGGT-GGGCCTCGCGAC-AGACGTCCTATT-GATCC 394
consensus_13307#3 TCCAATGCTAGCTATGGCCCACAAGGGT-GGGCCTCGCGAC-AGACGTCCTATT-GATCC 224
consensus_13307#1 TCCAATGCTAGCTATGGCTCGAAAGGGT-GGACCTCGTGAT-AGGCGCCCAATT-CATCC 414
consensus_13307#2 TCCAATGCTAGCTATGGCTCGAAAGGGNTGGACCTCGTGATTAGGCGGCNATNNGTGTNC 362
****************** * ***** ** ***** ** ** ** * * *
consensus_13307#0 CATGACTGGGCGCCCCTTAGACC-TTGAGGGTGTCACAGTTGTTGATGATT-CTCATACT 452
consensus_13307#3 CATGACTGGGCGCCCCTTAGACC-TTGAGGGTGTCACAGTTGTTGATGATT-CTCATACT 282
consensus_13307#1 GATGACTGGGCGCCCCTTGGATC-TTGAGGGTGTCACGGTTGTTGATGACT-CCAATGTT 472
consensus_13307#2 GNAGNGGGNANTNTCNGTGGNNAATTGGNAATGTTTTNNGGNATTGTGCCNGTNANTNCN 422
* * * * * *** *** * ** *
consensus_13307#0 CCCAAGAGTGGTGATGGAGCACCT---AACGAGGAGACAGCATAGATGAGGCATGATGAT 509
consensus_13307#3 CCCAAGAGTGGTGATGGAGCNCCT---AACGAGGAGACAGCATAGATGAGGCATGATGAT 339
consensus_13307#1 CCCGAAGGTGGTGCTGAGGAACCTGTGTCAGAGGAGTGATGCTGCAGTAGGTCTCCACTT 532
consensus_13307#2 NAANNTTGNGNNGATNNGGAATNNCGGNGNGNNCNGGNNNNNTATNTGGGGNCNNCTTT- 481
* * * * * * * * **
consensus_13307#0 ATATCTG-----TTTTAGCATATTGTGTG-GTTTTGCAAGATTAAAAAGTACTGTTTGTG 563
consensus_13307#3 ATATCTG-----TTTTAGCATATTGTGTG-GTTTTGCAAGATTAAAAAGTACTGTTTGTG 393
consensus_13307#1 GTTTGTTGTGCCTCTGATAAGATCATGAGTACTGTACAATATGGAAACTTCCTAATCATG 592
consensus_13307#2 ------------------------------------------------------------
consensus_13307#0 GCCTTTCTGATGGGTGTTTGAGCCTGTGACTAGTATGTTGTGACCTTTCTTGCTGACCGG 623
consensus_13307#3 GCCTTTCTGATGGGTGTTTGAGCCTGTGACTNGTATGTTGTGNNCTTTCTAAAAAAAAAA 453
consensus_13307#1 TAATCTTCCATTGTTTTCTAATAATTT-ACAAGGTCGTAGTGCTGCACTAAAAGTTAAAA 651
consensus_13307#2 ------------------------------------------------------------
consensus_13307#0 CTTTATTGATCTATGCTCCTGTCATCTATTCTCAGGAACACGAACCTGGAAACATGAGTT 683
consensus_13307#3 AAAAAAA----------------------------------------------------- 460
consensus_13307#1 AAAAAAAAAAAAA----------------------------------------------- 664
consensus_13307#2 ------------------------------------------------------------
consensus_13307#0 GTTCTTTTTGATAAAATTTGTATGTTGTGTTCCAAAAAAAAA 725
consensus_13307#3 ------------------------------------------
consensus_13307#1 ------------------------------------------
consensus_13307#2 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||