cluster # 13309

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Oryza sativa
cluster # 13309 cluster # 13309 Sequences # 12 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13309#0 length = 2096 sequences # 11

consensus_13309#1 length = 706 sequences # 1

consensusID : consensus_13309#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 2096
fasta sequence

                              [TCTCTCTCTTTCCTCCCAAATCCGCACGGCTCCCGTGCTCTCCTCTCCTCTCCTCTCAAAACCCTCCACGGCGGCGGCGGCGGGACTCCCTCTCTGGCGAGGCCTCGTCCTCTTCCTCCGTGAGAAAATATGGATGGGAACATCGAGAATCCTGCGGAGGACATGAGTGGGATTGCCAGTAATCTTGATAATGAGGAGCAGGCGATTCCTCTCAGTGATGTGCCTGAGCAGTACAAGGAAGATCCAGAAAATACATATGACGAAGAAACCAAAGACTCAAGCTATGAAGAATCAGGGATCCCATACAATGAAGATCAGGTGAACATAAATGATGGAAATGTGGGGCATCAGCATGAAGAGGACCAAGCTATCCCCTCAGAAGAAGGGCATGCCTATGGTGGAGAAGCTCAGGGAGAGCAGCAGGCCAATGCAGTAACTGATGAGAAGAAATGGCCAGGTTGGCCTGGAGAAAGTGTGTTCCGTATACTTGTTCCAGCCCAAAAAGTGGGCGCTGTCATTGGCCGAAAAGGGGAGTTTATCAAGAAAATGTGTGAGGAGTCCAGAGCTCGCATAAAGGTGCTTGATGGACCACCAGGGGTACCAGATAGAGCAGTTCTCACTGCAGTGTAAGGCCTCAAGTCGAATTGTTTATGTATCAAAAATAGACGAGCCGTCATGGTTATCAAAGTTCAGTTTTGTGCTCCTGTGCTGCAAATACTGTTAAGTCTTTTGATTATCGGATGAAGATCCCTGTCAAGAAGCTTCATATGTTGTCCGGTAATGATTTCAGCAAAAGATGAACCAGATGCACCATTACCTCCTGCTGTTGATGGATTGCTTAGAGTTCACAAGCGGATAACAGATGGTTTAGATGGTGAATCTGATCAACCTCAACGTGCTGCTGGTACTGTAGGGCCAACACGGCTACTGGTGCCAGCTTCTCAAGCTGGCAGCCTGATTGGCAAGCAAGGAGCAACCATTAAATCCATACAGGATGCTTCTAAGTGTGTTCTCCGAATTCTTGAAAGTGTACCACCTGTTGCATTAAGTGACGACCGAGTTGTTGAGATACAAGGTGAACCTCTAGATGTCCACAAAGCAGTGGAACTGATTGCAAGTCATTTAAGAAAATTTCTTGTTGACCGCAGTGTGCTCCCTTTGTTCGAAATGCAGATGAAAGTGCACAATGCGCACAGAGAGCAACCTATGCCACCTCCTCAGACGTGGGGTCCTCCTCCACCGTGGGGTCATCCATCAAACGTTCCTCCTGGTGGCCCAGGTTATGGTGGTAATCCACAGTTCATGCCTCCTCGGCCTCAAGACCACTATTATCCTCCTCCTGATGTACCTCCTGTCGAAAAGCAACCACACTATGGAATTTCTTCATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACACCCACCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTCTTTCCTACGCTGATGCCGTGATTGGGGCAGCTGGTGCTAGTATCAGCTACATTCGCAGGCATAGTGGTGCAACAATAAGTATTCAGGAAGGTGTTCCTGGAGAAATGACTGTGGAGATATCAGGAAGTGCTTCACAAGTTCAAACTGCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGCCCCCCACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCACCGTACGGAGGAACATCATACGGATCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGAAGCTATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGCGCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACTCTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCTGACGGCGGCAGCAAATGTTCCCTGTTTCCTCATATGCTGTCTAGCTTCTCATGTGTCGTAAAAT-GGAGCCCATTTTAACCTAATA-TTTCCTTCATGCACTCTTCTAAAAAAAAAAA]

[+] EMBL AK066451             [TCTCTCTCTTTCCTCCCAAATCCGCACGGCTCCCGTGCTCTCCTCTCCTCTCCTCTCAAAACCCTCCACGGCGGCGGCGGCGGGACTCCCTCTCTGGCGAGGCCTCGTCCTCTTCCTCCGTGAGAAAATATGGATGGGAACATCGAGAATCCTGCGGAGGACATGAGTGGGATTGCCAGTAATCTTGATAATGAGGAGCAGGCGATTCCTCTCAGTGATGTGCCTGAGCAGTACAAGGAAGATCCAGAAAATACATATGACGAAGAAACCAAAGACTCAAGCTATGAAGAATCAGGGATCCCATACAATGAAGATCAGGTGAACATAAATGATGGAAATGTGGGGCATCAGCATGAAGAGGACCAAGCTATCCCCTCAGAAGAAGGGCATGCCTATGGTGGAGAAGCTCAGGGAGAGCAGCAGGCCAATGCAGTAACTGATGAGAAGAAATGGCCAGGTTGGCCTGGAGAAAGTGTGTTCCGTATACTTGTTCCAGCCCAAAAAGTGGGCGCTGTCATTGGCCGAAAAGGGGAGTTTATCAAGAAAATGTGTGAGGAGTCCAGAGCTCGCATAAAGGTGCTTGATGGACCACCAGGGGTACCAGATAGAGCAGTTCTCACTGCAGTGTAAGGCCTCAAGTCGAATTGTTTATGTATCAAAAATAGACGAGCCGTCATGGTTATCAAAGTTCAGTTTTGTGCTCCTGTGCTGCAAATACTGTTAAGTCTTTTGATTATCGGATGAAGATCCCTGTCAAGAAGCTTCATATGTTGTCCGGTAATGATTTCAGCAAAAGATGAACCAGATGCACCATTACCTCCTGCTGTTGATGGATTGCTTAGAGTTCACAAGCGGATAACAGATGGTTTAGATGGTGAATCTGATCAACCTCAACGTGCTGCTGGTACTGTAGGGCCAACACGGCTACTGGTGCCAGCTTCTCAAGCTGGCAGCCTGATTGGCAAGCAAGGAGCAACCATTAAATCCATACAGGATGCTTCTAAGTGTGTTCTCCGAATTCTTGAAAGTGTACCACCTGTTGCATTAAGTGACGACCGAGTTGTTGAGATACAAGGTGAACCTCTAGATGTCCACAAAGCAGTGGAACTGATTGCAAGTCATTTAAGAAAATTTCTTGTTGACCGCAGTGTGCTCCCTTTGTTCGAAATGCAGATGAAAGTGCACAATGCGCACAGAGAGCAACCTATGCCACCTCCTCAGACGTGGGGTCCTCCTCCACCGTGGGGTCATCCATCAAACGTTCCTCCTGGTGGCCCAGGTTATGGTGGTAATCCACAGTTCATGCCTCCTCGGCCTCAAGACCACTATTATCCTCCTCCTGATGTACCTCCTGTCGAAAAGCAACCACACTATGGAATTTCTTCATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACACCCACCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTCTTTCCTACGCTGATGCCGTGATTGGGGCAGCTGGTGCTAGTATCAGCTACATTCGCAGGCATAGTGGTGCAACAATAAGTATTCAGGAAGGTGTTCCTGGAGAAATGACTGTGGAGATATCAGGAAGTGCTTCACAAGTTCAAACTGCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGCCCCCCACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCACCGTACGGAGGAACATCATACGGATCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGAAGCTATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGCGCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACTCTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCTGACGGCGGCAGCAAATGTTCCCTGTTTCCTCATATGCTGTCTAGCTTCTCATGTGTCGTAAAAT GGAGCCCATTTTAACCTAATA TTTCCTTCATGCACT                ]
[+] EMBL C72609               [                          CGGCTCCCGTCNTCTCCTCTCCTCTCCTCTCAAAACCCTCCACGGCGGCGGCGGCGGGACTCCCTCTCTGGCGAGGCCTCGTCCTCTTCCTCCGTGAGAAAATATGGATGGGAACATCGAGAATCCTGCGGAGGACATGAGTGGGATTGCCAGTAATCTTGATAATGAGGAGCAGGCGATTCCTCTCAGTGATGTGCCTGAGCAGTACAAGGAAGATCCAGAAAATACATATGACGAAGAAACCAAAGACTCAAGCTATGAAGAATCAGGGATCCCATACAATGAAGATCAGGTGAACATAAATGATGG AATGTNGGGCATCAGCATGAAGAGGACCAAGCTATCCCCTCAGAAGAAGGGCATGCCTATGGTGGAGAAGCTCAGGGAGAGCAGCAGGCCAtt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB663941             [                                                   CCTCTCAAAACCCTCCACGGCGGCGGCGGCGGGACTCCCTCTCTGGCGAGGCCTCGTCCTCTTCCTCCGTGAGAAAATATGGATGGGAACATCGAGAATCCTGCGGAGGACATGAGTGGGATTGCCAGTAATCTTGATAATGAGGAGCAGGCGATTCCTCTCAGTGATGTGCCTGAGCAGTACAAGGAAGATCCAGAAAATACATATGACGAAGAAACCAAAGACTCAAGCTATGAAGAATCAGGGATCCCATACAATGAAGATCAGGTGAACATAAATGATGGAAATGTGGGGCATCAGCATGAAGAGGACCAAGCTATCCCCTCAGAAGAAGGGCATGCCTATGGTGGAGAAGCTCAGGGAGAGCAGCAGGCCAATGCAGTAACTGATGAGAAGAAATGGCCAGGTTGGCCTGGAGAAAGTGTGTTCCGTATACTTGTTCCAGCCCAAAAAGTGGGCGCTGTCATTGGCCGAAAAGGGGAGTTTATCAAGAAAATGTGTGAGGAGTCCAGAGCTCGCATAAAGGTGCTTGATGGACCACCAGGGGTACCAGATAGAGCAGTTCTCACTGCAGTGTAAGGGCTCAAGTCGAATTGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU032111             [                                                                                                                                                                                                                                                                                       AGCTATGAAGAATCAGGGATCCCATACAATGAAGATCAGGTGAACATAAATGATGGAAATGTGGGGCATCAGCATGAAGAGGACCAAGCTATCCCCTCAGAAGAAGGGCATGCCTATGGTGGAGAAGCTCAGGGAGAGCAGCAGGCCAATGCAGTAACTGATGAGAAGAAATGGCCAGGTTGGCCTGGAGAAAGTGTGTTCCGTATACTTGTTCCAGCCCAAAAAGTGGGCGCTGTCATTGGCCGAAAAGGGGAGTTTATCAAGAAAATGTGTGANGAGTCCAGAGCTCGCATAAAGGTGCTTTNTGGACCACCAGGGGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OS0591A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGTGCACAATGCGCACAGAGAGCAACCTATGCCACCTCCTCAGACGTGGGGTCCTCCTCCACCGTGGGGTCATCCATCAAACGTTCCTCCTGGTGGCCCAGGTTATGGTGGTAATCCACAGTTCATGCCTCCTCGGCCTCAAGACCACTATTATCCTCCTCCTGATGTACCTCCTGTCGAAAAGCAACCACACTATGGAATTTCTTCATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACACCCACCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTNTTTCCTACGCTGATGCCGTGATTGGGGCAGCTGGTGCTAGTATCAGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSC04541             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGTGCACAATGCGCACAGAGAGCAACCTATGCCACCTCCTCAGACGTGGGGTCCTCCTCCACCGTGGGGTCATCCATCAAACGTTCCTCCTGGTGGCCCAGGTTATGGTGGTAATCCACAGTTCATGCCTCCTCGGCCTCAAGACCACTATTATCCTCCTCCTGATGTACCTCCTGTCGAAAAGCAACCACACTATGGAATTTCTTCATATGGCCGTGATGNACCTNCTACTGGTGCTCCTCCTGNCTaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB656090             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAACGTTCCTCCTGGTGGCCCAGGTTATGGTGGTAATCCACAGTTCATGCCTCCTCGGCCTCAAGACCACTATTATCCTCCTCCTGATGTACCTCCTGTCGAAAAGCAACCACACTATGGAATTTCTTCATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACACCCACCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTCTTTCCTACGCTGATGCCGTGATTGGGGCAGCTGGTGCTAGTATCAGCTACATTCGCAGGCATAGTGGTGCAACAATAAGTATTCAGGAAGGTGTTCCTGGAGAAATGACTGTGGAGATATCAGGAAGTGCTTCACAAGTTCAAACTGCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGCCCCCCACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCACCGTACGGAGGAACATCATACGGATCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGAAGCTATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGCGCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACTCTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCTGACGGCGGCAGCAAATGTTCCCTGTTTCCTCATATGCTGTCTAGCTTCTCATGTGTCGTAAAAT GGAGCCCATTTTAACCTAATA TTTCCTTC                       ]
[-] EMBL CB663942             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTGTCGAAAAGCAACCACACTATGGAATTTCTTCATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACACCCACCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTCTTTCCTACGCTGATGCCGTGATTGGGGCAGCTGGTGCTAGTATCAGCTACATTCGCAGGCATAGTGGTGCAACAATAAGTATTCAGGAAGGTGTTCCTGGAGAAATGACTGTGGAGATATCAGGAAGTGCTTCACAAGTTCAAACTGCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGCCCCCCACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCACCGTACGGAGGAACATCATACGGATCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGAAGCTATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGCGCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACTCTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCTGACGGCGGCAGCAAATGTTCCCTGTTTCCTCATATGCTGTCTAGCTTCTCATGTGTCGTAAAAT GGAGCCCA                                             ]
[+] EMBL CA766290             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ttATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACACCCACCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTCTTTCCTACGCTGATGCCGTGATTGGGGCAGCTGGTGCTAGTATCAGCTACATTCGCAGGCATAGTGGTGCAACAATAAGTATTCAGGAAGGTGTTCCTGGAGAAATGACTGTGGAGATATCAGGAAGTGCTTCACAAGTTCAAACTGCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGCCCCCCACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCACCGTACGGAGGAACATCATACGGATCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGAAGCTATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGCGCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACTCTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCTGACGGCGGCAGCAAATGTTCCCTGTTTCCTCATATGCTGNCTAGCTTCTCATGTGTTGTAAAATGGGAGCCCATTTTAACCTAATATTTTCCTTCATGCACTCTTCT           ]
[+] EMBL AU095527             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGGAGGAACATCATATGGATCTCCTCCTGGCGGCGCAGGTCCTCACANCGGTGGAAGCTATGGCGGTGCGCCACCCCCNTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGCGCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACTCTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCTGACGGCGGCAGCAAATGTTCCCTGTTTCCTCATATGCTGTCTAGCTTCTCATGTGTCGTAAAAT GGAGCCCATTTTAACCTAATA TTTCCTTCAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL D42363               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACTCTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCTGACGGCGGCAGCAAATGTTCCCTGTTTCCTCATATGCTGTCTAGCTTCTCATGTGTCGTA                                                          ]




>consensus_13309#0
TCTCTCTCTTTCCTCCCAAATCCGCACGGCTCCCGTGCTCTCCTCTCCTCTCCTCTCAAA
ACCCTCCACGGCGGCGGCGGCGGGACTCCCTCTCTGGCGAGGCCTCGTCCTCTTCCTCCG
TGAGAAAATATGGATGGGAACATCGAGAATCCTGCGGAGGACATGAGTGGGATTGCCAGT
AATCTTGATAATGAGGAGCAGGCGATTCCTCTCAGTGATGTGCCTGAGCAGTACAAGGAA
GATCCAGAAAATACATATGACGAAGAAACCAAAGACTCAAGCTATGAAGAATCAGGGATC
CCATACAATGAAGATCAGGTGAACATAAATGATGGAAATGTGGGGCATCAGCATGAAGAG
GACCAAGCTATCCCCTCAGAAGAAGGGCATGCCTATGGTGGAGAAGCTCAGGGAGAGCAG
CAGGCCAATGCAGTAACTGATGAGAAGAAATGGCCAGGTTGGCCTGGAGAAAGTGTGTTC
CGTATACTTGTTCCAGCCCAAAAAGTGGGCGCTGTCATTGGCCGAAAAGGGGAGTTTATC
AAGAAAATGTGTGAGGAGTCCAGAGCTCGCATAAAGGTGCTTGATGGACCACCAGGGGTA
CCAGATAGAGCAGTTCTCACTGCAGTGTAAGGCCTCAAGTCGAATTGTTTATGTATCAAA
AATAGACGAGCCGTCATGGTTATCAAAGTTCAGTTTTGTGCTCCTGTGCTGCAAATACTG
TTAAGTCTTTTGATTATCGGATGAAGATCCCTGTCAAGAAGCTTCATATGTTGTCCGGTA
ATGATTTCAGCAAAAGATGAACCAGATGCACCATTACCTCCTGCTGTTGATGGATTGCTT
AGAGTTCACAAGCGGATAACAGATGGTTTAGATGGTGAATCTGATCAACCTCAACGTGCT
GCTGGTACTGTAGGGCCAACACGGCTACTGGTGCCAGCTTCTCAAGCTGGCAGCCTGATT
GGCAAGCAAGGAGCAACCATTAAATCCATACAGGATGCTTCTAAGTGTGTTCTCCGAATT
CTTGAAAGTGTACCACCTGTTGCATTAAGTGACGACCGAGTTGTTGAGATACAAGGTGAA
CCTCTAGATGTCCACAAAGCAGTGGAACTGATTGCAAGTCATTTAAGAAAATTTCTTGTT
GACCGCAGTGTGCTCCCTTTGTTCGAAATGCAGATGAAAGTGCACAATGCGCACAGAGAG
CAACCTATGCCACCTCCTCAGACGTGGGGTCCTCCTCCACCGTGGGGTCATCCATCAAAC
GTTCCTCCTGGTGGCCCAGGTTATGGTGGTAATCCACAGTTCATGCCTCCTCGGCCTCAA
GACCACTATTATCCTCCTCCTGATGTACCTCCTGTCGAAAAGCAACCACACTATGGAATT
TCTTCATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACAC
CCACCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTCTTTCCTACGCTGAT
GCCGTGATTGGGGCAGCTGGTGCTAGTATCAGCTACATTCGCAGGCATAGTGGTGCAACA
ATAAGTATTCAGGAAGGTGTTCCTGGAGAAATGACTGTGGAGATATCAGGAAGTGCTTCA
CAAGTTCAAACTGCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGC
CCCCCACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCA
CCGTACGGAGGAACATCATACGGATCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGA
AGCTATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGC
GCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACT
CTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCT
GACGGCGGCAGCAAATGTTCCCTGTTTCCTCATATGCTGTCTAGCTTCTCATGTGTCGTA
AAATGGAGCCCATTTTAACCTAATATTTCCTTCATGCACTCTTCTAAAAAAAAAAA

consensusID : consensus_13309#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [CCACTATATCCTCCTCCTNATGTACCTCCTGTCGAAAAGCAACCACACTATGGAATTTCTNCATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACACCCACCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTCTTTCCTACGCTGATNCCNTGATTGGGGCANCTGGTGCTAGTATCAGCTACATTCGCAGGCATAGTGGTGCAACAATAAGTATTCAGGAAGGTNTTCCTGGAGAAATGACTGTGGAGATATCAGGAAGTGCTTCACAAGTTCAAACTNCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGCCCCCCACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCACCGTACGGAGGAACATCATACGGATCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGAAGCTATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGCGCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACTCTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCTGACGGCGGCAGCAAATGTTCCCTGTTTCCTCAAAAAAAAAAAAAAAAAA]

[+] EMBL C98049               [CCACTATATCCTCCTCCTNATGTACCTCCTGTCGAAAAGCAACCACACTATGGAATTTCTNCATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACACCCACCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTCTTTCCTACGCTGATNCCNTGATTGGGGCANCTGGTGCTAGTATCAGCTACATTCGCAGGCATAGTGGTGCAACAATAAGTATTCAGGAAGGTNTTCCTGGAGAAATGACTGTGGAGATATCAGGAAGTGCTTCACAAGTTCAAACTNCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGCCCCCCACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCACCGTACGGAGGAACATCATACGGATCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGAAGCTATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGCGCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACTCTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCTGACGGCGGCAGCAAATGTTCCCTGTTTCCTCAAAAAAAAAAAAAAAAAA]




>consensus_13309#1
CCACTATATCCTCCTCCTNATGTACCTCCTGTCGAAAAGCAACCACACTATGGAATTTCT
NCATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACACCCA
CCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTCTTTCCTACGCTGATNCC
NTGATTGGGGCANCTGGTGCTAGTATCAGCTACATTCGCAGGCATAGTGGTGCAACAATA
AGTATTCAGGAAGGTNTTCCTGGAGAAATGACTGTGGAGATATCAGGAAGTGCTTCACAA
GTTCAAACTNCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGCCCC
CCACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCACCG
TACGGAGGAACATCATACGGATCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGAAGC
TATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGCGCC
CTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACTCTC
AGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCTGAC
GGCGGCAGCAAATGTTCCCTGTTTCCTCAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13309#0      TCTCTCTCTTTCCTCCCAAATCCGCACGGCTCCCGTGCTCTCCTCTCCTCTCCTCTCAAA 60
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      ACCCTCCACGGCGGCGGCGGCGGGACTCCCTCTCTGGCGAGGCCTCGTCCTCTTCCTCCG 120
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      TGAGAAAATATGGATGGGAACATCGAGAATCCTGCGGAGGACATGAGTGGGATTGCCAGT 180
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      AATCTTGATAATGAGGAGCAGGCGATTCCTCTCAGTGATGTGCCTGAGCAGTACAAGGAA 240
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      GATCCAGAAAATACATATGACGAAGAAACCAAAGACTCAAGCTATGAAGAATCAGGGATC 300
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      CCATACAATGAAGATCAGGTGAACATAAATGATGGAAATGTGGGGCATCAGCATGAAGAG 360
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      GACCAAGCTATCCCCTCAGAAGAAGGGCATGCCTATGGTGGAGAAGCTCAGGGAGAGCAG 420
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      CAGGCCAATGCAGTAACTGATGAGAAGAAATGGCCAGGTTGGCCTGGAGAAAGTGTGTTC 480
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      CGTATACTTGTTCCAGCCCAAAAAGTGGGCGCTGTCATTGGCCGAAAAGGGGAGTTTATC 540
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      AAGAAAATGTGTGAGGAGTCCAGAGCTCGCATAAAGGTGCTTGATGGACCACCAGGGGTA 600
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      CCAGATAGAGCAGTTCTCACTGCAGTGTAAGGCCTCAAGTCGAATTGTTTATGTATCAAA 660
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      AATAGACGAGCCGTCATGGTTATCAAAGTTCAGTTTTGTGCTCCTGTGCTGCAAATACTG 720
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      TTAAGTCTTTTGATTATCGGATGAAGATCCCTGTCAAGAAGCTTCATATGTTGTCCGGTA 780
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      ATGATTTCAGCAAAAGATGAACCAGATGCACCATTACCTCCTGCTGTTGATGGATTGCTT 840
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      AGAGTTCACAAGCGGATAACAGATGGTTTAGATGGTGAATCTGATCAACCTCAACGTGCT 900
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      GCTGGTACTGTAGGGCCAACACGGCTACTGGTGCCAGCTTCTCAAGCTGGCAGCCTGATT 960
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      GGCAAGCAAGGAGCAACCATTAAATCCATACAGGATGCTTCTAAGTGTGTTCTCCGAATT 1020
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      CTTGAAAGTGTACCACCTGTTGCATTAAGTGACGACCGAGTTGTTGAGATACAAGGTGAA 1080
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      CCTCTAGATGTCCACAAAGCAGTGGAACTGATTGCAAGTCATTTAAGAAAATTTCTTGTT 1140
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      GACCGCAGTGTGCTCCCTTTGTTCGAAATGCAGATGAAAGTGCACAATGCGCACAGAGAG 1200
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      CAACCTATGCCACCTCCTCAGACGTGGGGTCCTCCTCCACCGTGGGGTCATCCATCAAAC 1260
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      GTTCCTCCTGGTGGCCCAGGTTATGGTGGTAATCCACAGTTCATGCCTCCTCGGCCTCAA 1320
consensus_13309#1      ------------------------------------------------------------
                                                                                   

consensus_13309#0      GACCACTATTATCCTCCTCCTGATGTACCTCCTGTCGAAAAGCAACCACACTATGGAATT 1380
consensus_13309#1      --CCACTAT-ATCCTCCTCCTNATGTACCTCCTGTCGAAAAGCAACCACACTATGGAATT 57
                         ******* *********** **************************************

consensus_13309#0      TCTTCATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACAC 1440
consensus_13309#1      TCTNCATATGGCCGTGATGCACCTCCTACTGGTGCTCCTCCTGCCTCAGGGAATCAACAC 117
                       *** ********************************************************

consensus_13309#0      CCACCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTCTTTCCTACGCTGAT 1500
consensus_13309#1      CCACCACATGGTTCTTCTCAAATAACACACAGCATGCAAGTTCCTCTTTCCTACGCTGAT 177
                       ************************************************************

consensus_13309#0      GCCGTGATTGGGGCAGCTGGTGCTAGTATCAGCTACATTCGCAGGCATAGTGGTGCAACA 1560
consensus_13309#1      NCCNTGATTGGGGCANCTGGTGCTAGTATCAGCTACATTCGCAGGCATAGTGGTGCAACA 237
                        ** *********** ********************************************

consensus_13309#0      ATAAGTATTCAGGAAGGTGTTCCTGGAGAAATGACTGTGGAGATATCAGGAAGTGCTTCA 1620
consensus_13309#1      ATAAGTATTCAGGAAGGTNTTCCTGGAGAAATGACTGTGGAGATATCAGGAAGTGCTTCA 297
                       ****************** *****************************************

consensus_13309#0      CAAGTTCAAACTGCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGC 1680
consensus_13309#1      CAAGTTCAAACTNCCCAGCAACTGATCAAGAATTTCATGGCTGAAGCTTCTCCCCAAGGC 357
                       ************ ***********************************************

consensus_13309#0      CCCCCACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCA 1740
consensus_13309#1      CCCCCACAAGCTCCTGCTCCTCCTGCTCAACCAGTCGACACGGGCTACAGCTCCTACCCA 417
                       ************************************************************

consensus_13309#0      CCGTACGGAGGAACATCATACGGATCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGA 1800
consensus_13309#1      CCGTACGGAGGAACATCATACGGATCTCCTCCTGGCGGCGCAGGTCCTCACAACGGTGGA 477
                       ************************************************************

consensus_13309#0      AGCTATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGC 1860
consensus_13309#1      AGCTATGGCGGTGCGCCACCCCCCTACCCTCCGAGCTACGGATACTAGTTGTTTGGAAGC 537
                       ************************************************************

consensus_13309#0      GCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACT 1920
consensus_13309#1      GCCCTAGGCTTTAGAAAGAGTGGGATCTTCTGGTTTTGTTCTGTTCGTCTGTCAAGAACT 597
                       ************************************************************

consensus_13309#0      CTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCT 1980
consensus_13309#1      CTCAGATTATTGGTTGTTAGGACTTCCTGAACGCTTTAGTTATGGTGTAAACTGCTTTCT 657
                       ************************************************************

consensus_13309#0      GACGGCGGCAGCAAATGTTCCCTGTTTCCTCATATGCTGTCTAGCTTCTCATGTGTCGTA 2040
consensus_13309#1      GACGGCGGCAGCAAATGTTCCCTGTTTCCTCAAAAAAAAAAAAAAAAAA----------- 706
                       ******************************** *        *                 

consensus_13309#0      AAATGGAGCCCATTTTAACCTAATATTTCCTTCATGCACTCTTCTAAAAAAAAAAA 2096
consensus_13309#1      --------------------------------------------------------