These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13312#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 2206 fasta sequence [AAAAAGGCGAATAATTCCGCTGTTGCTTCGCTGCCTTTTGCCTTCTTCCTCATCCTCTCCANCACCACCGCCACCGGCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATCTCCCCCCGAGTCCCCAGCGAGATGGCCACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCGGCCGCCGAGGAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGGAGGTGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGCGCGGTGGAGACGGCGGCGGAACGTGGTGGTGGTGGATGGGGGCGAGCCGCTGGGGATCTCCGCCGCGAGCTGCACACGGCGCTCGGCACCGCCAAGTGGCAGCTTGATGAGTTGCAGCGGGCTATTAAATCAAATTATAGTGTTGTGTTAGCTGGCAAAGATACTAGAGCTCGGCATGATGACTTTGTTTCAGCCATTGGGCATCGTATCCTAGAGGTGGAGAAGTTCTTGAAAGAATCCAATACTACTGAAGGGCGTGGCCCTCTTAGCTGGGTTCGCTTGGATGAGGGTGAACGTGAAGAGTTAGCTCATTTCCTTTCAGCAGGAACTTATCAAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGTAGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGCTCAG-CAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGA-CAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATG-CTGATATT-GGATCATGG-ACTATTACAATTCCTGATGAGG-CCAATGGCATCGAT-GAACAATCATTTGATGATCTGCCCAAGGTACCTTTGGTTAAGAG-CCCTAG-CTCTTCTGTATTAATGAATG-CCTTCCAATCAAAGAC-AAGAATG-AAGACAAAGAATGGAGCC-AAGAAGTTGG-CTGGAGCTGA-CCAACAGGATGTTGTGG-AAACTCTT-CCTCTGACAAATTCTCGCTCGTGCCAGGGGTTTGATGGG--TTGTTTCAAAGAAGCAAAAGTTGCTTGAGCACCTCTGATGATGAGGATAACTGCAATAAGAAACTTTATGGTTGCCTTGGTGCATTCCGTCGGCTACTTCAGAGGTCTCAGTATCAAGTTCAATATGGACGTCCTATTCAGTTACTTATCCTAGCAATTGTTGTTTTACTAGTCTTAATTTATGCCATGAAGGCAATTTTGTGACTTTTTTGATCAACTAGTGTCTCACGATTGACTTGCACTTCTTCATCAGCAGTCTGTAAGGTGTATGACAATTCATAGCTGATGAAACTAAAAGGGGAAGTGGTATTGTTTCTCTAGCTAGTTGAATGCCAGTGACAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGGCTATGAAGAAACAACCTGACATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAATCAGTGAAGGATTGATTGTATGGACCGGCAGATCAT-TT-CGTGTGCC--TTAAGCCCAGAGGAACTGAACAATCA-TCTTCATATACCA-GTTTTGCTGATGCTGCATCTGCAACATTTTAAACA-GTCTGGTGCAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTACAACTGGCAAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATCTATTAACACAAGTATCGCAAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACATTGGAGTAACTTTTACCACACGATTGGCTTGTAACCTGTAAATAACTACTGCTTCAAATGAGCACCTGTTCTTACAAATTTGATAATGTTGGGTGTCGGTCTGCACTGCAACATCCAAAAAACCTTTGTAAGTAAGCACATGTCAACAGCTTGAAATTCAACAGACTTCTGATAAAACGCACTGGTTCATGTTGCGTTAAAAAAGA] [+] EMBL OSS14607A [AAAAAGGCGAATAATTCCGCTGTTGCTTCGCTGCCTTTTGCCTTCTTCCTCATCCTCTCCANCACCACCGCCACCGGCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATCTCCCCCCGAGTCCCCAGCGAGATGNCCACGTCGTTCGACCGNTGGGAGAAGGACCCCTTCTTCCCGGCCGNCGAGNAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGNAGGTGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGGGCGGTGGAGACGGCGGNGGAACGTGGTGGTGGTGGATNGGGGCGAACCGCTGGG ] [+] EMBL AK100724 [ GCCTTTTGCCTTCTTCCTCCTCCTCTCCACCACCACCGCCACCGGCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATCTCCCCCCGAGTCCCCAGCGAGATGGCCACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCGGCCGCCGAGGAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGGAGGTGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGCGCGGTGGAGACGGCGGCGGAACGTGGTGGTGGTGGATGGGGGCGAGCCGCTGGGGATCTCCGCCGCGAGCTGCACACGGCGCTCGGCACCGCCAAGTGGCAGCTTGATGAGTTGCAGCGGGCTATTAAATCAAATTATAGTGTTGTGTTAGCTGGCAAAGATACTAGAGCTCGGCATGATGACTTTGTTTCAGCCATTGGGCATCGTATCCTAGAGGTGGAGAAGTTCTTGAAAGAATCCAATACTACTGAAGGGCGTGGCCCTCTTAGCTGGGTTCGCTTGGATGAGGGTGAACGTGAAGAGTTAGCTCATTTCCTTTCAGCAGGAACTTATCAAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGTAGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGCTCAG CAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGA CAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATG CTGATATT GGATCATGG ACTATTACAATTCCTGATGAGG CCAATGGCATCGAT GAACAATCATTTGATGATCTGCCCAAGGTACCTTTGGTTAAGAG CCCTAG CTCTTCTGTATTAATGAATG CCTTCCAATCAAAGAC AAGAATG AAGACAAAGAATGGAGCC AAGAAGTTGG CTGGAGCTGA CCAACAGGATGTTGTGG AAACTCTT CCTCTGACAAATTCTCGCTCGTGCCAGGGGTTTGATGGG TTGTTTCAAAGAAGCAAAAGTTGCTTGAGCACCTCTGATGATGAGGATAACTGCAATAAGAAACTTTATGGTTGCCTTGGTGCATTCCGTCGGCTACTTCAGAGGTCTCAGTATCAAGTTCAATATGGACGTCCTATTCAGTTACTTATCCTAGCAATTGTTGTTTTACTAGTCTTAATTTATGCCATGAAGGCAATTTTGTGACTTTTTTGATCAACTAGTGTCTCACGATTGACTTGCACTTCTTCATCAGCAGTCTGTAAGGTGTATGACAATTCATAGCTGATGAAACTAAAAGGGGAAGTGGTATTGTTTCTCTAGCTAGTTGAATGCCAGTGACAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGGCTATGAAGAAACAACCTGACATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAATCAGTGAAGGATTGATTGTATGGACCGGCAGATCAT TT CGTGTGCC TTAAGCCCAGAGGAACTGAACAATCA TCTTCATATACCA GTTTTGCTGATGCTGCATCTGCAACATTTTAAACA GTCTGGTGCAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTACAACTGGCAAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATCTATTAACACAAGTATCGCAAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACATTGGAGTAACTTTTACCACACGATTGGCTTGTAACCTGTAAATAACTACTGCTTCAAATGAGCACCTGTTCTTACAAATTTGATAATGTTGGGTGTCGGTCTGCACTGCAACATCCAAAAAACCTTTGTAAGTAAGCACATGTCAACAGCTTGAAATTCAA ] [+] EMBL CB662258 [ GCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATCTCCCCCCGAGTCCCCAGCGAGATGGCCACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCGGCCGCCGAGGAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGGAGGTGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGCGCGGTGGAGACGGCGGCGGAACGTGGTGGTGGTGGATGGGGGCGAGCCGCTGGGGATCTCCGCCGCGAGCTGCACACGGCGCTCGGCACCGCCAAGTGGCAGCTTGATGAGTTGCAGCGGGCTATTAAATCAAATTATAGTGTTGTGTTAGCTGGCAAAGATACTAGAGCTCGGCATGATGACTTTGTTTCAGCCATTGGGCATCGTATCCTAGAGGTGGAGAAGTTCTTGAAAGAATCCAATACTACTGAAGGGCGTGGCCCTCTTAGCTGGGTTCGCTTGGATGAGGGTGAACGTGAAGAGTTAGCTCATTTCCTTTCAGCAGGAACTTATCAAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGTAGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGCTCAG CAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGA CAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATG CTGATATT GGATCATGG ACTATTACAATTCCTGATGAGG CCAATGGCATCGATNGAAC ATCATTTGATGATCTGCCCAAGGTA ] [+] EMBL CB662259 [ GCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATCTCCCCCCGAGTCCCCAGCGAGATGGCCACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCGGCCGCCGAGGAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGGAGGTGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGCGCGGTGGAGACGGCGGCGGAACGTGGTGGTGGTGGATGGGGGCGAGCCGCTGGGGATCTCCGCCGCGAGCTGCACACGGCGCTCGGCACCGCCAAGTGGCAGCTTGATGAGTTGCAGCGGGCTATTAAATCAAATTATAGTGTTGTGTTAGCTGGCAAAGATACTAGAGCTCGGCATGATGACTTTGTTTCAGCCATTGGGCATCGTATCCTAGAGGTGGAGAAGTTCTTGAAAGAATCCAATACTACTGAAGGGCGTGGCCCTCTTAGCTGGGTTCGCTTGGATGAGGGTGAACGTGAAGAGTTAGCTCATTTCCTTTCAGCAGGAACTTATCAAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGTAGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGCTCAG CAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGA CAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATG CTGATATT GGATCATGG ACTATTACAATTCCTGATGAGG GCCATGGCATCGAT GAACAATCATTT ] [+] EMBL CF323388 [ AAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGTAGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGCTCAG CAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGA CAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATG CTGATATT GGATCATGG ACTATTACAATTCCTGATGAGG CCAATGGCATCGAT GAACAATCATTTGATGATCTGCCCAAGGTACCTTTGGTTAAGAG CCCTAG CTCTTCTGTATTAATGAATG CCTTCCAATCAAAGAC AAGAATG AAGACAAAGAATGGAGCC AAGAAGTTGG CTGGAGCTGA CCAACA GATGTTGTGG AAACTCTT CCTCTGACAAATTCTCGCTCG GCCAGGGGTTTGATGGGGTTTGTTTCAAAGAAGCAAAAGTTGCTTGAGCACCTCTGATGATGAGGATAACTGCAATAAGAAACTTTATGGTTGCCTTGGTGCA ] [+] EMBL AU225700 [ gccgctATTCTTCGGGCTCAGACAGAGTCAGGTTTAGTGTC ACTAAGGAGGAGACCAGCTCCAGGTCATAGGAGAACGGCAAGTGCCTATGCCTGATATTGGGATCATGGAACTATTACATTCCCTGATGAGGACCAATGGCATCGAT GAACCATCATTTGATGATCTGCCCAAGGTACCTTTGGTTAAGAGACCCTAGACTCTTCTGTATTAATGAATGCCCTTCCAATCAAAGACAAAGAATGAAAGACAAAGAATGGAGCCAAAGAAGTTGGTCTGGAGCTGACCCAACAGGATGTAGTGGAAAACTCTTCCCTCTGAC AATTCTCGa ] [-] EMBL CB680766 [ ATGCCAGTGACAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGGCTATGAAGAAACAACCTGACATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAATCAGTGAAGGATTGATTGTATGGACCGGCAGATCAT TT CGTGTGCC TTAAGCCCAGAGGAACTGAACAATCA TCTTCATATACCA GTTTTGCTGATGCTGCATCTGCAACATTTTAAACA GTCTGGTGCAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTACAACTGGCAAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATCTATTAACACAAGTATCGCAAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACATTGGAGTAACTTTTACCACACGATTGGCTTGTAACCTGTAAATAACTACTGCTTCAAATGAGCACCTGTTCTTACAAATTTGATAATGTTGGGTGTCGGTCTGCACTGCAACATCCAAAAAACCTTTGTAAGTAAGCACATGTCAACAGCTTGAAATTCAACAGACTTCTGATAAAACGCACTGGTTCATGTTGCGTTAAAAAAGA] [+] EMBL BI805257 [ cagaGGAACTGAACATCATCTTGCATATACCAGTTTAGCCCAGAGGAACTGAACAATCAGTCTTCATATACCACGTTTTGCTGATGCTGCATCTGCAACATTTTAAACACGTCTGGT CAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTAC ACTGGCCAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGGAAATTCATCTATTAACACAAGTATCGCAAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACATTGGAGTAACTTTTACCACACGATTGGCTTGTAACCTGTAAATAACTACTGCTTCAAATGAGCACCTGTTCTTACAAAaaaaaaa ] consensusID : consensus_13312#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1698 fasta sequence [TCCGACTTTCCGTTGCCCTCGTCTCCCCCTTCTCGCTCGCAATGGCGACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCCGCCGCCGAGGAGGTGCAGGGATCCGCCGACCGCATGGAGTCGGTGTACAGGATATGGGTGCAGGACAGGAGTGGGGGCGATTCGGAGGCGGCGGCGGCGGCGGCTGCTGCTGCCGTGGGTGGAGGAGGGCTCCCTGCCGGCGAGCTCCGCCGCGAGCTGCACACTGCGCTCGGCACCGCCAAGTGGCAGCTAGATGAATTGGAGCGGGCAATTAGATCAAACGACAAGGTTTTCTCAGCTGGAAAGGACACAAAAGCACGGCATGATGACTTTGTTGCGGCAATCGGTTGTCGCATACTTGAGGTTGAGAACAATTTGAAAGAATCCAATGTTGCAGAGGGAAGGGGTGCCCTAAGCTGGATTGATTTGGATGAGGATGAACGGAATGATCTTGCTACCTTCCTATCTGCAAGCTCTTTTCAACAGCGAGACAAAGTAGTTACAATTCCATCTGTTGGTGATATTGATGTGGGCAACAATGCAGCAATGGTTAAAAAGGATATGTATGCTGACAGCTCCAAGGATTCTGGCTCCGCTGAGTTGAGTTCAGCAAGAGTAAAGGAAGAAACGCATCGTGGGCACAGAAGGGCTGCTAGTGCCCATGCTGATATCGGGTCATGGACTATGTTATGTCCAAATGAGAGCGAGAGTTCTGCTGACCTACCATATGATGACAAGCACCAAGAACCTTTGCTGAAGATAGTGAAAACATGTGCACTGACGAGTGCCTTGCAATCTAAGCCTAGAACGAAGAAAAAAGGTGGAGCTGTGAAATGGGCCGCTGTTGATCAACAAGATGTGGAAGAGACAATCCCTCTCAGTTCTCAGATGGGTCAGGGATCGGATAGATGCTTTGAAAGAAGCAAGAGTTGTGTAAGTACTTGTGATGAGAGTACATACAATAAGAAACTTTATGGTTGTCTTGGAGCCCTGCATAGACGACTGCAGAGGTCGCGATATCGAATTCGGTATGGGCGTCCTGTTCAATTAATTGTGTTAGCAGTTGCTGCCCTCTTAATATTCATGTGTGTATTCAAGAAAATTTGGTGACCTTTTGATGGGCTCATGATTTCCATAGAAGCCTCACCACAGCAGCTTGCGAGGTTCTACCATTTTTGCCTGCATAGCTCATATAACTGGTGTTGAACAGGCATCTGAGGCATGAAGAATGATCAGACTGGAGCAGCTTATCGCATTGACTGTACAGAAGTGTGCTGCATCAGGATGTCATCGGAAATGCAGTGTGCTGCCTGCATGATGCACCTCAAGATCTTGATCCTCACCATGGCCTGTTGACATATGCAACACAGTGTAGGGCCCGCTTTGGAAAGTTGGAAGAGTGGTGGAATTTCCTTTGTGAAATATATCTTCTGAACCCCTCATTCATAGCTGGTTCCATGAGAATAGGTTCTGAAGTGAAATGTGTAAGATGCTAGAACAATTGCCACACAATCAGAAGCTAGCCCGGGCTATCCGGCTCTAGAATTAGAATTTTGATGCCTCTGGCATTACGTTTGTTAGGCTATTAATTAAAGGAGCTATAAGGGGTAGCTAAATGTATTGCGATGTTTGAAACTTCTGCACTGTTCGCGTGTTATATGAAAGACTAATC] [+] EMBL AK071256 [TCCGACTTTCCGTTGCCCTCGTCTCCCCCTTCTCGCTCGCAATGGCGACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCCGCCGCCGAGGAGGTGCAGGGATCCGCCGACCGCATGGAGTCGGTGTACAGGATATGGGTGCAGGACAGGAGTGGGGGCGATTCGGAGGCGGCGGCGGCGGCGGCTGCTGCTGCCGTGGGTGGAGGAGGGCTCCCTGCCGGCGAGCTCCGCCGCGAGCTGCACACTGCGCTCGGCACCGCCAAGTGGCAGCTAGATGAATTGGAGCGGGCAATTAGATCAAACGACAAGGTTTTCTCAGCTGGAAAGGACACAAAAGCACGGCATGATGACTTTGTTGCGGCAATCGGTTGTCGCATACTTGAGGTTGAGAACAATTTGAAAGAATCCAATGTTGCAGAGGGAAGGGGTGCCCTAAGCTGGATTGATTTGGATGAGGATGAACGGAATGATCTTGCTACCTTCCTATCTGCAAGCTCTTTTCAACAGCGAGACAAAGTAGTTACAATTCCATCTGTTGGTGATATTGATGTGGGCAACAATGCAGCAATGGTTAAAAAGGATATGTATGCTGACAGCTCCAAGGATTCTGGCTCCGCTGAGTTGAGTTCAGCAAGAGTAAAGGAAGAAACGCATCGTGGGCACAGAAGGGCTGCTAGTGCCCATGCTGATATCGGGTCATGGACTATGTTATGTCCAAATGAGAGCGAGAGTTCTGCTGACCTACCATATGATGACAAGCACCAAGAACCTTTGCTGAAGATAGTGAAAACATGTGCACTGACGAGTGCCTTGCAATCTAAGCCTAGAACGAAGAAAAAAGGTGGAGCTGTGAAATGGGCCGCTGTTGATCAACAAGATGTGGAAGAGACAATCCCTCTCAGTTCTCAGATGGGTCAGGGATCGGATAGATGCTTTGAAAGAAGCAAGAGTTGTGTAAGTACTTGTGATGAGAGTACATACAATAAGAAACTTTATGGTTGTCTTGGAGCCCTGCATAGACGACTGCAGAGGTCGCGATATCGAATTCGGTATGGGCGTCCTGTTCAATTAATTGTGTTAGCAGTTGCTGCCCTCTTAATATTCATGTGTGTATTCAAGAAAATTTGGTGACCTTTTGATGGGCTCATGATTTCCATAGAAGCCTCACCACAGCAGCTTGCGAGGTTCTACCATTTTTGCCTGCATAGCTCATATAACTGGTGTTGAACAGGCATCTGAGGCATGAAGAATGATCAGACTGGAGCAGCTTATCGCATTGACTGTACAGAAGTGTGCTGCATCAGGATGTCATCGGAAATGCAGTGTGCTGCCTGCATGATGCACCTCAAGATCTTGATCCTCACCATGGCCTGTTGACATATGCAACACAGTGTAGGGCCCGCTTTGGAAAGTTGGAAGAGTGGTGGAATTTCCTTTGTGAAATATATCTTCTGAACCCCTCATTCATAGCTGGTTCCATGAGAATAGGTTCTGAAGTGAAATGTGTAAGATGCTAGAACAATTGCCACACAATCAGAAGCTAGCCCGGGCTATCCGGCTCTAGAATTAGAATTTTGATGCCTCTGGCATTACGTTTGTTAGGCTATTAATTAAAGGAGCTATAAGGGGTAGCTAAATGTATTGCGATGTTTGAAACTTCTGCACTGTTCGCGTGTTATATGAAAGACTAATC] [+] EMBL CB096516 [ AGGTGGATCTGTGAAATGGGCCGCTGTTGATC ACAAGATGTGGAAGAGACAATCCCTCTCAGTTCTCAGATGGGTCAGGGATCGGATAGATGCTTTGAGAGAAGCAAGAGTTGTGTAAGTACTTGTGATGAGAGTACATACAATAAGAAACTTTATGGTTGTCTTGGAGCCCTGCATAGACGACTGCAGAGGTCGCGATATCGAATTCGGTATGGGCGTCCTGTTCAATTAATTGTGTTAGCAGTTGCTGCCCTCTTAATATTCATGTGTGTATTCAAGAAAATTTGGTGACCTTTTGATGGGCTCATGATTTCCATAGAAGCCTCACCACAGCAGCTTGCGAGGTTCTACCATTTTTGCCTGCATAGCTCATATAACTGGTGTTGAACAGGCACCTGAGGCATGAAGAATGATCAGACTGGAGCAGCTTATCGCATTGACTGTACAGAAGTGTGCTGCATCAGGATGTCATCGGAAATGCAGTGTGCTGCCTGCATGATGCACCTCAAGATCTTGATCCTCACCATGGCCTGTTGACATATGCAACACCGTGTAGGGCCCGCTTT ] consensusID : consensus_13312#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [GTTTCTCTAGCTAGTTGAATGCCAGTGACAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGGCTATGAAGAAACAACCTGACATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAATCAGTGAAGGATTGATTGTATGGACCGGCAGATCATTTCGTGTGCCTTAAGCCCAGAGGAACTGAACAATCATCTTCATATACCAGTTTTGCTGATGCTGCATCTGCAACATTTTAAACAGTCTGGTGCAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTACAACTGGCAAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096644 [GTTTCTCTAGCTAGTTGAATGCCAGTGACAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGGCTATGAAGAAACAACCTGACATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAATCAGTGAAGGATTGATTGTATGGACCGGCAGATCATTTCGTGTGCCTTAAGCCCAGAGGAACTGAACAATCATCTTCATATACCAGTTTTGCTGATGCTGCATCTGCAACATTTTAAACAGTCTGGTGCAGTACTGCAGCCTTGTTAACCTGTGCAATTCAGCAGTACATAGAGCTAGAATGCTGATGCTACAACTGGCAAACAACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTACTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCATGAACTTTGCGGAAGAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13312#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [GTGTCTAGGTGGCAATGAACTTGTGCGGAAGAATTTGAGTACCTATATGTGTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATCTATTAACACCAGTATCGCACAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACCTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACCTTGGAGTAACTTTTACCACCCGATTGGCTTGTAACCTGTAAATAAGGGCCTGTTTGGTACCAAAAAAAAAA] [+] EMBL BI813478 [GTGTCTAGGTGGCAATGAACTTGTGCGGAAGAATTTGAGTACCTATATGTGTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATCTATTAACACCAGTATCGCACAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACCTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGACCTTGGAGTAACTTTTACCACCCGATTGGCTTGTAACCTGTAAATAAGGGCCTGTTTGGTACCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13312#0 AAAAAGGCGAATAATTCCGCTGTTGCTTCGCTGCCTTTTGCCTTCTTCCTCATCCTCTCC 60 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ------------------------------------------------------------ consensus_13312#0 ANCACCACCGCCACCGGCCGACGCATCTCCGATTCGATTTCGCCTTCCCACGAATCTATC 120 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ------------------------------------------------------------ consensus_13312#0 TCCCCCCGAGTCCCCAGCGAGATGGCCACGTCGTTCGACCGCTGGGAGAAGGACCCCTTC 180 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ------------------------------------------------------------ consensus_13312#0 TTCCCGGCCGCCGAGGAGGTGCAGGAGTCCGCCGACCGGATGGAGTCGGTGTACAGGAGG 240 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ------------------------------------------------------------ consensus_13312#0 TGGTTGCAGGAGAGGAAAGAAGTAGGTGGCGGCGCGGTGGAGACGGCGGCGGAACGTGGT 300 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ------------------------------------------------------------ consensus_13312#0 GGTGGTGGATGGGGGCGAGCCGCTGGGGATCTCCGCCGCGAGCTGCACACGGCGCTCGGC 360 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ------------------------------------------------------------ consensus_13312#0 ACCGCCAAGTGGCAGCTTGATGAGTTGCAGCGGGCTATTAAATCAAATTATAGTGTTGTG 420 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 --------------------------TCCGACTTTCCGTTGCCCTCGTCTCCCCCTTCTC 34 consensus_13312#0 TTAGCTGGCAAAGATACTAGAGCTCGGCATGATGACTTTGTTTCAGCCATTGGGCATCGT 480 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 GCTCGCAATGGCGACGTCGTTCGACCGCTGGGAGAAGGACCCCTTCTTCCCCGCCGCCGA 94 consensus_13312#0 ATCCTAGAGGTGGAGAAGTTCTTGAAAGAATCCAATACTACTGAAGGGCGTGGCCCTCTT 540 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 GGAGGTGCAGGGATCCGCCGACCGCATGGAGTCGGTGTACAGGATATGGGTGCAGGACAG 154 consensus_13312#0 AGCTGGGTTCGCTTGGATGAGGGTGAACGTGAAGAGTTAGCTCATTTCCTTTCAGCAGGA 600 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 GAGTGGGGGCGATTCGGAGGCGGCGGCGGCGGCGGCTGCTGCTGCCGTGGGTGGAGGAGG 214 consensus_13312#0 ACTTATCAAAAACGTGATGAGGTGGTTACAATTACATCTGCTGGTGACATTGAGGTTGGT 660 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 GCTCCCTGCCGGCGAGCTCCGCCGCGAGCTGCACACTGCGCTCGGCACCGCCAAGTGGCA 274 consensus_13312#0 AGCAATGCAAGAAGGGTGAAAAAGGGTGTTTCAATTGATAGTTCGAATGATTCTTCGGGC 720 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 GCTAGATGAATTGGAGCGGGCAATTAGATCAAACGACAAGGTTTTCTCAGCTGGAAAGGA 334 consensus_13312#0 TCAGCAGAGTCAGGTTTAGTGTCAACTAAGGAGGAGACAGCTCCAGGTCATAGGAGAACG 780 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 CACAAAAGCACGGCATGATGACTTTGTTGCGGCAATCGGTTGTCGCATACTTGAGGTTGA 394 consensus_13312#0 GCAAGTGCCTATGCTGATATTGGATCATGGACTATTACAATTCCTGATGAGGCCAATGGC 840 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 GAACAATTTGAAAGAATCCAATGTTGCAGAGGGAAGGGGTGCCCTAAGCTGGATTGATTT 454 consensus_13312#0 ATCGATGAACAATCATTTGATGATCTGCCCAAGGTACCTTTGGTTAAGAGCCCTAGCTCT 900 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 GGATGAGGATGAACGGAATGATCTTGCTACCTTCCTATCTGCAAGCTCTTTTCAACAGCG 514 consensus_13312#0 TCTGTATTAATGAATGCCTTCCAATCAAAGACAAGAATGAAGACAAAGAATGGAGCCAAG 960 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 AGACAAAGTAGTTACAATTCCATCTGTTGGTGATATTGATGTGGGCAACAATGCAGCAAT 574 consensus_13312#0 AAGTTGGCTGGAGCTGACCAACAGGATGTTGTGGAAACTCTTCCTCTGACAAATTCTCGC 1020 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 GGTTAAAAAGGATATGTATGCTGACAGCTCCAAGGATTCTGGCTCCGCTGAGTTGAGTTC 634 consensus_13312#0 TCGTGCCAGGGGTTTGATGGGTTGTTTCAAAGAAGCAAAAGTTGCTTGAGCACCTCTGAT 1080 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 AGCAAGAGTAAAGGAAGAAACGCATCGTGGGCACAGAAGGGCTGCTAGTGCCCATGCTGA 694 consensus_13312#0 GATGAGGATAACTGCAATAAGAAACTTTATGGTTGCCTTGGTGCATTCCGTCGGCTACTT 1140 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 TATCGGGTCATGGACTATGTTATGTCCAAATGAGAGCGAGAGTTCTGCTGACCTACCATA 754 consensus_13312#0 CAGAGGTCTCAGTATCAAGTTCAATATGGACGTCCTATTCAGTTACTTATCCTAGCAATT 1200 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 TGATGACAAGCACCAAGAACCTTTGCTGAAGATAGTGAAAACATGTGCACTGACGAGTGC 814 consensus_13312#0 GTTGTTTTACTAGTCTTAATTTATGCCATGAAGGCAATTTTGTGACTTTTTTGATCAACT 1260 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 CTTGCAATCTAAGCCTAGAACGAAGAAAAAAGGTGGAGCTGTGAAATGGGCCGCTGTTGA 874 consensus_13312#0 AGTGTCTCACGATTGACTTGCACTTCTTCATCAGCAGTCTGTAAGGTGTATGACAATTCA 1320 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 TCAACAAGATGTGGAAGAGACAATCCCTCTCAGTTCTCAGATGGGTCAGGGATCGGATAG 934 consensus_13312#0 TAGCTGATGAAACTAAAAGGGGAAGTGGTATTGTTTCTCTAGCTAGTTGAATGCCAGTGA 1380 consensus_13312#2 --------------------------------GTTTCTCTAGCTAGTTGAATGCCAGTGA 28 consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ATGCTTTGAAAGAAGCAAGAGTTGTGTAAGTACTTGTGATGAGAGTACATACAATAAGAA 994 consensus_13312#0 CAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGG 1440 consensus_13312#2 CAGTGAACACTGTTTTGTATGTTCGAAGGGATTCTATCATAACTCGCAAGATTGTCTTGG 88 consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ACTTTATGGTTGTCTTGGAGCCCTGCATAGACGACTGCAGAGGTCGCGATATCGAATTCG 1054 consensus_13312#0 CTATGAAGAAACAACCTGAC--ATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAA 1498 consensus_13312#2 CTATGAAGAAACAACCTGAC--ATGGGAAGCACAACATTTAGCAACCCAATATAGCAAAA 146 consensus_13312#3 -----------------------------------------GTGTCTAGGTGGCAATGAA 19 consensus_13312#1 GTATGGGCGTCCTGTTCAATTAATTGTGTTAGCAGTTGCTGCCCTCTTAATATTCATGTG 1114 * * consensus_13312#0 TCAGTGAAGGATTGATTGTATGGACCGGCAGATCA--TTTCGTGTGCCTTAAGC------ 1550 consensus_13312#2 TCAGTGAAGGATTGATTGTATGGACCGGCAGATCA--TTTCGTGTGCCTTAAGC------ 198 consensus_13312#3 CTTGTGCGGAA--GAATTTGAGTACCTATATGTGT--TGATGCTATAGATTGGC------ 69 consensus_13312#1 TGTATTCAAGA--AAATTTGGTGACCTTTTGATGGGCTCATGATTTCCATAGAAGCCTCA 1172 * * * * * *** * * * * consensus_13312#0 CCAGAGGAA-CTG-AACAATCATCTTCATATACCAGTTTTGC---------TGATGCTGC 1599 consensus_13312#2 CCAGAGGAA-CTG-AACAATCATCTTCATATACCAGTTTTGC---------TGATGCTGC 247 consensus_13312#3 TTGGAGAAGGCTG-AAAATTCATCTATTAACACCAGTATCGCA--------CAGAGCTGC 120 consensus_13312#1 CCACAGCAGCTTGCGAGGTTCTACCATTTTTGCCTGCATAGCTCATATAACTGGTGTTGA 1232 ** * ** * ** * ** * * ** * ** consensus_13312#0 ATCTGCAAC----------ATTTTAAACAGTCTGGTGCAGTACTGCAGCCTTGTTAACCT 1649 consensus_13312#2 ATCTGCAAC----------ATTTTAAACAGTCTGGTGCAGTACTGCAGCCTTGTTAACCT 297 consensus_13312#3 AGG-ACTAC----------AGGTCTTGCAGCCTGTACAGATGGTTGTGTTTTGTACACCT 169 consensus_13312#1 ACAGGCATCTGAGGCATGAAGAATGATCAGACTGGAGCAGC-TTATCGCATTGACTGTAC 1291 * * * * *** *** * * *** consensus_13312#0 ----GTGCAATTCAGCAGTACAT----AGAGCTAGAATGCTGATGCTACAACTGGCAAAC 1701 consensus_13312#2 ----GTGCAATTCAGCAGTACAT----AGAGCTAGAATGCTGATGCTACAACTGGCAAAC 349 consensus_13312#3 AGAGGTGCAGTTTAGAAGAACAG----AAAAATT--CTTCTGTTCTTAGACCTTG-GAGT 222 consensus_13312#1 AGAAGTGTGCTGCATCAGGATGTCATCGGAAATGCAGTGTGCTGCCTGCATGATGCACCT 1351 *** * * ** * * * * * * * consensus_13312#0 AACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTA 1761 consensus_13312#2 AACAGTTTTGTGCACGCAGCTGTGGGGTTTGCCTGGATAATTGAGTGGCATCTCCATGTA 409 consensus_13312#3 AAC--TTTTAC-CACCCGATTG-GCTTGTAACCTG--TAAATAAG-GGCCTGTTTG-GTA 274 consensus_13312#1 CAAGATCTTGATCCTCACCATGGCCTGTTGACATATGCAACACAGTGTAGGGCCCGCTTT 1411 * * ** * ** * * * ** ** * * consensus_13312#0 CTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCAT--GAACTTTGCGGAA 1819 consensus_13312#2 CTGTATTCCAATTACTGATGTCTCAAGTATAGTGCTAGGTGGCAT--GAACTTTGCGGAA 467 consensus_13312#3 CCAAAAAAAAAA------------------------------------------------ 286 consensus_13312#1 GGAAAGTTGGAAGAGTGGTGGAATTTCCTTTGTGAAATATATCTTCTGAACCCCTCATTC 1471 * * consensus_13312#0 GAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAATTCATC 1879 consensus_13312#2 GAATTTGAGTACCTATATTTTGATGCTATAGATTGGCTTGGAGAAGGCTGAAAAAAAAAA 527 consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ATAGCTGGTTCCATGAGAATAGGTTCTGAAGTGAAATGTGTAAGATGCTAGAACAATTGC 1531 consensus_13312#0 TATTAACACAAGTATCGCAAGAGCTGCAGGACTACAGGTCTTGCAGCCTGTACAGATGGT 1939 consensus_13312#2 AAAAAAAAAAAAA----------------------------------------------- 540 consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 CACACAATCAGAAGCTAGCCCGGGCTATCCGGCTCTAGAATTAGAATTTTGATGCCTCTG 1591 consensus_13312#0 TGTGTTTTGTACACTAGAGGTGCAGTTTAGAAGAACAGAAAAATTCTTCTGTTCTTAGAC 1999 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 GCATTACGTTTGTTAGGCTATTAATTAAAGGAGCTATAAGGGGTAGCTAAATGTATTGCG 1651 consensus_13312#0 ATTGGAGTAACTTTTACCACACGATTGGCTTGTAACCTGTAAATAACTACTGCTTCAAAT 2059 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ATGTTTGAAACTTCTGCACTGTTCGCGTGTTATATGAAAGACTAATC------------- 1698 consensus_13312#0 GAGCACCTGTTCTTACAAATTTGATAATGTTGGGTGTCGGTCTGCACTGCAACATCCAAA 2119 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ------------------------------------------------------------ consensus_13312#0 AAACCTTTGTAAGTAAGCACATGTCAACAGCTTGAAATTCAACAGACTTCTGATAAAACG 2179 consensus_13312#2 ------------------------------------------------------------ consensus_13312#3 ------------------------------------------------------------ consensus_13312#1 ------------------------------------------------------------ consensus_13312#0 CACTGGTTCATGTTGCGTTAAAAAAGA 2206 consensus_13312#2 --------------------------- consensus_13312#3 --------------------------- consensus_13312#1 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||