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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13317#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 782 fasta sequence
[TGCACTTCGCAGTGGTATTAGCAGCTACTACAAAGAACAAGACAGTAAGATCTTACTACTTAGCGAGGAGAAGAGATCGATCGATCGATCGTAGGAGCAATGGCGTCGACCAGGCAGGCTCTCATCGCGTTCGCCGTCGTCCTCCTCGCCGCCGCTTTCCTCGTCGCCGCCTCCGCCGCCGACGAAACCCAGGCTAACAAGAAGGAGGACACCAAGGTGGACGTGCAGGACTACTGGCGCGGCGGCGGCGGGTACCCACCACGGGGCGGCGGCTATGGCTATCCGGGGCGCGGCTACGGCTATCCGGGGCGC-GGCGGCGGCGGTGGCTACCCGGGCGGAGGAGGAGGCTGGCAC-GGCTGCCGCTGCTGCGGCT-ACGGCTACCGCGGCGGATGCCGCTG-CTGCGCGAGCCCCGACGAGATCCCGGAGCCCATGTACCGCCCGG-AG-GTGGATCCCC-ACAA-CTGAT-CC-AATCGATCGATCGATCGATCCTC-GGCACATGTTTAATTTTAGTTTGGTTTCGTC-AATAAAATC-AAAGGC-GGC-GCGTATGATCTCTATACGTGTACGTGTGTGTGGCCGCCATACTTATATATGTACGTATGCACAGTGATCTTGGAGAAGTGGAGAACACATAATGCTTATTTTCCACTGTTTTTAATTAGGGTATGGTC-GATC-GATCAGTACTGTGTGTGTGA-CC-GATGTATGTATCA-CTTTGTATTATTATGCATGTGATGGAATAAATCTACCTCTATATAGTTATAGTGGTATTGTTAAAAAAAAAAAAAAAA]
[+] EMBL AK062460 [TGCACTTCGCAGTGGTATTAGCAGCTACTACAAAGAACAAGACAGTAAGATCTTACTACTTAGCGAGGAGAAGAGATCGATCGATCGATCGTAGGAGCAATGGCGTCGACCAGGCAGGCTCTCATCGCGTTCGCCGTCGTCCTCCTCGCCGCCGCTTTCCTCGTCGCCGCCTCCGCCGCCGACGAAACCCAGGCTAACAAGAAGGAGGACACCAAGGTGGACGTGCAGGACTACTGGCGCGGCGGCGGCGGGTACCCACCACGGGGCGGCGGCTATGGCTATCCGGGGCGCGGCTACGGCTATCCGGGGCGC GGCGGCGGCGGTGGCTACCCGGGCGGAGGAGGAGGCTGGCAC GGCTGCCGCTGCTGCGGCT ACGGCTACCGCGGCGGATGCCGCTG CTGCGCGAGCCCCGACGAGATCCCGGAGCCCATGTACCGCCCGG AG GTGGATCCCC ACAA CTGAT CC AATCGATCGATCGATCGATCCTC GGCACATGTTTAATTTTAGTTTGGTTTCGTC AATAAAATC AAAGGC GGC GCGTATGATCTCTATACGTGTACGTGTGTGTGGCCGCCATACTTATATATGTACGTATGCACAGTGATCTTGGAGAAGTGGAGAACACATAATGCTTATTTTCCACTGTTTTTAATTAGGGTATGGTC GATC GATCAGTACTGTGTGTGTGA CC GATGTATGTATCA CTTTGTATTATTATGCATGTGATGGAATAAATCTACCTCTATATAGTTATAG ]
[+] EMBL OSS2970A [ ATTAGCAGCTACTACAAAGAACAAGACAGTAAGATCTTACTACTTAGCGAGGAGAAGAGATCGATCGATCGATCGTAGGAGCAATGGCGTCGACCAGGCAGGCTCTCATCGCGTTCGCCGTCGTCCTCCTCGCCGCCGCTTTCCTCGTCGCCGCCTCCGCCGCCGACGAAACCCAGGCTAACAAGAAGGAGGACACCAAGGTGGACGTGCAGGACTACTGGCGCGGCGGCGGCGGGTACCCACCACGGGGCGGCGGCTATGGTTATCCGGGGCGCGGCTACGGCTATCCGGGGCGC GGCG ]
[+] EMBL OSS2221A [ TTAGCAGCTACTACAAAGAACAAGACAGTAAGATCTTACTACTTAGCGAGGAGAAGAGATCGATCGATCGATCGTAGGAGCAATGGCGTCGACCAGGCAGGCTCTCATCGCGTTCGCCGTCGTCCTCCTCGCCGCCGCTTTCCTCGTCGCCGCCTCCGCCGCCGACGAAACCCAGGCTAACAAGAAGGAGGACANCAAGGTGGACGTNCAGG ]
[+] EMBL AU102073 [ GCGGCGGCTATGGCTATCCGGGGCGCGGCTACGGCTATCCGGGGCGC GGCGGCGGCGGTGGCTACCCGGGCGGAGGAGGAGGCTGGCAC GGCTGCCGCTGCTGC GCTNACGGCTACCGCGGCGGATG CG TGNCTGCGCGA CCCCGACGAGATCCCGGAGCCCATGTACCGCCCGG AG GTGGATCCCC ACAA CTGAT CC AATCGATCGATCGATCGATCCTC GGCACATGTTTAATTTTAGTTTGGTTTCGTC AATAAAATC AAAGGC GGC GCGTATGATCTCTATACGTGTACGTGTGTGTGGCCGCCATACTTATATATGTACGTATGCACAGTGATCTTGGAGAAGTGGAGAACACATAATGCTTATTTTCCACTGTTTTTAATTAGGGTATGGTC GATC GATCANTACTGTGTGTGTNA CC GATGTATGTATCA CTTTGTA ]
[+] EMBL AU102074 [ CTACGGCTA CCGGGGCGCAGNCAGC GCGGT GCTACCC GGCGGAGGAGGAGGCTGGCACAGGCTG CGCTGCTGCGGCT ACGG TACCGCGGCGGATGCCGCT NTGCGCGAGCCCCGACGAGATCCCGGAGCCCATGTACCGCCCGG AG GTGGATCCCC ACAA CTGAT CC AATCGATCGATCGATCGATCCTC GGCACATGTTTAATTTTAGTTTGGTTTCGTC AATAAAATC AAAGGC GGC GCGTATGATCTCTATACGTGTACGTGTGTGTGGCCGCCATACTTATATATGTACGTATGCACAGTGATCTTGGAGAAGTGGAGAACACATAATGCTTATTTTCCACTGTTTTTAATTAGGGTATGGTC GATC GATCAGTACTGTGTGTGTGA CC GATGTATGTATCA CTTTGTATTATTATGCATGTGATGGAATAAATCTACCTCTATATAGTTATAGTGGTATTGTTAAAGAAAAAAA ]
[+] EMBL BI798266 [ cGCTACCGCGCCGGATCCCGCTG CTGCGCGAGCCCCGACGAGATCCCGGAGCCCATGTACCGCCCGG AG GTGGATCCCC ACAA CTGAT CC AATCGATCGATCGATCGATCCTC GGCACATGTTTAATTTTAGTTTGGTTTCGTC AATAAAAGC AAAGGC GGC GCGTATGATCTCTATACGTGTACGTGTGTGT GCCGCCATACTTATATATGTACGTATGCACAGTGATCTTGGAGAAGTGGAGAACACATAATGCTTATTTTCCACTGTTTTTAATTAGGGTAT GTC GATC GATCAGTACTGTGTGTGTGACCC GATGTATGTATCA CTTTGTATTATTATGCATGTGATGGAATAAATCTACCTCTATATAGTTATAGTGGTATTGTTAAAAAAAA ]
[+] EMBL BI796881 [ tGCCCATGTACCGCCCGGTAGTGTGGATCCCCAACAA CTGAT CCAAATCGTTCGATCGATCGATCCTCAGGCACATGTTTAATTTTAGTTTGGTTTCGTCAAATAAAAGCAAAAGGCAGGCAGCGTATGATCTCTATACGTGTACGTGTGTGTGCCAGCCATACTTATATATGTACGTATGCACAGTGATCTTGGAGAAGTGGAGAACACATAATGCTTATTTTCCACTGTTTTTAATTAGGGTATGGTCAGATCAGATCAGTACTGTGTGTGTGA CCAGATGTATGTATCA CTTTGTATTATTATGCATGTGATGGAATAAATCTACCTCTATATAGTTATAGTGGTA AAAAAAAAA ]
[+] EMBL AU108347 [ CATGTACCNCCCCG A GTGGTCCCCC ACAACCTGATCCC AATCGATCGATCGATCGATCCTC GGCACATGTTTAATTTTAGTTTGGTTTCGTC AATAAAATC AAA GC GGC GCGTATGATCTCTATACGTGTACGTGTGTGTGGCCGCCATACTTATATATGTACGTATGCACAGTGATCTTGGAGAAGTGGAGAACACATAATGCTTATTTTCCACTGTTTTTAATTAGGGTATGGTC GATC GATCAGTACTGTGTGTGTGA CC GATGTATGTATCA CTTTGTATTATTATGCATGTGATGGAATAAATCTACCTCTATATAGTTATAGTGGTATTGTTAAAGACTTCTAAAAAA]
[+] EMBL BI798626 [ GGC GCGTATGATCTCTATACGTGTACGTGTGTGTGGCCGCCATACTTATATATGTACGTATGCACAGTGATCTTGGAGAAGTGGAGAACACATAATGCTTATTTTCCCCTGTTTTTAATTAGGGTATGGTC GATC GATCAGTACTGTGTGTGTGA CC GATGTATGTATCACCTTTGTATTATTATGCATGTGATGGAATAAATCTACCTCTATATAGTTATAGTGGTATTGTTAAAAAAAAAA ]
consensusID : consensus_13317#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence
[CCGGGGACGTGTTNTGAGATTTANNTTTGGTTTCGTCAATATAAATCATGGCGGCGCGTATNATCTCTATACGTNTACGTTTNTTTGGCCGCCATACTTATATATNTNCGTATGCACAGTNATCTTGGAGAAGTGGAGAACACATAATGCTTATTTCCCACTGTTTTNAATTAGGGTATGGNCGATCGATCAGTACTGTGTGTNTAACCGATGTATGTATCACTTNGTATTATAATCCATGTAATGGAATAAATCTACCTCTATATAGTTATAGTGGG]
[+] EMBL AU161826 [CCGGGGACGTGTTNTGAGATTTANNTTTGGTTTCGTCAATATAAATCATGGCGGCGCGTATNATCTCTATACGTNTACGTTTNTTTGGCCGCCATACTTATATATNTNCGTATGCACAGTNATCTTGGAGAAGTGGAGAACACATAATGCTTATTTCCCACTGTTTTNAATTAGGGTATGGNCGATCGATCAGTACTGTGTGTNTAACCGATGTATGTATCACTTNGTATTATAATCCATGTAATGGAATAAATCTACCTCTATATAGTTATAGTGGG]
consensusID : consensus_13317#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 251 fasta sequence
[CTGCACTTCGCAGTGGTATTAGCAGCTACTACAAAGAACAAGACAGTAAGATCTTACTACTTAGCGAGGAGAAGAGATCGATCGATCCTCGGCGCATGTTTAATTTTAGTTTGGTTTCGTCAATAAAATCAAAGGCGGCGCGTATGATCTCTATACGTGTACGTGTGTGTGGCCGCCATACTTATATATGTACGTATGCACAGTGATAAAAAAAAAAAAAAAAACACTGTCATGCCGTTACATAGCGTATC]
[+] EMBL CF329535 [CTGCACTTCGCAGTGGTATTAGCAGCTACTACAAAGAACAAGACAGTAAGATCTTACTACTTAGCGAGGAGAAGAGATCGATCGATCCTCGGCGCATGTTTAATTTTAGTTTGGTTTCGTCAATAAAATCAAAGGCGGCGCGTATGATCTCTATACGTGTACGTGTGTGTGGCCGCCATACTTATATATGTACGTATGCACAGTGATAAAAAAAAAAAAAAAAACACTGTCATGCCGTTACATAGCGTAT ]
[-] EMBL CF329534 [ TGCACTTCGCAGTGGTATTAGCAGCTACTACAAAGAACAAGACAGTAAGATCTTACTACTTAGCGAGGAGAAGAGATCGATCGATCCTCGGCGCATGTTTAATTTTAGTTTGGTTTCGTCAATAAAATCAAAGGCGGCGCGTATGATCTCTATACGTGTACGTGTGTGTGGCCGCCATACTTATATATGTACGTATGCACAGTGATAAAAAAAAAAAAAAAAACACTGTCATGCCGTTACATAGCGTATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13317#0 TGCACTTCGCAGTGGTATTAGCAGCTACTACAAAGAACAAGACAGTAAGATCTTACTACT 60
consensus_13317#1 ------------------------------------------------------------
consensus_13317#2 ------------------------------------------------------------
consensus_13317#0 TAGCGAGGAGAAGAGATCGATCGATCGATCGTAGGAGCAATGGCGTCGACCAGGCAGGCT 120
consensus_13317#1 ------------------------------------------------------------
consensus_13317#2 ------------------------------------------------------------
consensus_13317#0 CTCATCGCGTTCGCCGTCGTCCTCCTCGCCGCCGCTTTCCTCGTCGCCGCCTCCGCCGCC 180
consensus_13317#1 ------------------------------------------------------------
consensus_13317#2 ------------------------------------------------------------
consensus_13317#0 GACGAAACCCAGGCTAACAAGAAGGAGGACACCAAGGTGGACGTGCAGGACTACTGGCGC 240
consensus_13317#1 ------------------------------------------------------------
consensus_13317#2 ------------------------------------------------------------
consensus_13317#0 GGCGGCGGCGGGTACCCACCACGGGGCGGCGGCTATGGCTATCCGGGGCGCGGCTACGGC 300
consensus_13317#1 ------------------------------------------------------------
consensus_13317#2 ------------------------------------------------------------
consensus_13317#0 TATCCGGGGCGCGGCGGCGGCGGTGGCTACCCGGGCGGAGGAGGAGGCTGGCACGGCTGC 360
consensus_13317#1 ------------------------------------------------------------
consensus_13317#2 ------------------------------------------------------------
consensus_13317#0 CGCTGCTGCGGCTACGGCTACCGCGGCGGATGCCGCTGCTGCGCGAGCCCCGACGAGATC 420
consensus_13317#1 ------------------------------------------------------------
consensus_13317#2 --------------------------------------CTGCACTTCGCAGTGGTATTAG 22
consensus_13317#0 CCGGAGCCCATGTACCGCCCGGAGGTGGATCCCCACAACTGATCCAATCGATCGATCGAT 480
consensus_13317#1 ------------------------------------------------------------
consensus_13317#2 CAGCTACTACAAAGAACAAGACAGTAAGATCTTACTACTTAGCGAGGAGAAGAGATCGAT 82
consensus_13317#0 CGATCCTCGGCACATGTTT---AATTTTAGTTTGGTTTCGTCAATAAAATCAAAGGCGGC 537
consensus_13317#1 -----CCGGGGACGTGTTNTGAGATTTANNTTTGGTTTCGTCAATATAAATCATGGCGGC 55
consensus_13317#2 CGATCCTCGGCGCATGTTT---AATTTTAGTTTGGTTTCGTCAATAAAATCAAAGGCGGC 139
* ** * **** **** **************** ** * ******
consensus_13317#0 GCGTATGATCTCTATACGTGTACGTGTGTGTGGCCGCCATACTTATATATGTACGTATGC 597
consensus_13317#1 GCGTATNATCTCTATACGTNTACGTTTNTTTGGCCGCCATACTTATATATNTNCGTATGC 115
consensus_13317#2 GCGTATGATCTCTATACGTGTACGTGTGTGTGGCCGCCATACTTATATATGTACGTATGC 199
****** ************ ***** * * ******************** * *******
consensus_13317#0 ACAGTGATCTTGGAGAAGTGGAGAACAC-ATAATGCTTATTTTCCACTGTTTTTAATTAG 656
consensus_13317#1 ACAGTNATCTTGGAGAAGTGGAGAACAC-ATAATGCTTATTTCCCACTGTTTTNAATTAG 174
consensus_13317#2 ACAGTGATAAAAAAAAAAAAAAAAACACTGTCATGCC-GTTACATAGCGTATC------- 251
***** ** * ** * ***** * **** ** * ** *
consensus_13317#0 GGTATGGTCGATCGATCAGTACTGTGTGTGTGACCGATGTATGTATCACTTTGTATTATT 716
consensus_13317#1 GGTATGGNCGATCGATCAGTACTGTGTGTNTAACCGATGTATGTATCACTTNGTATTATA 234
consensus_13317#2 ------------------------------------------------------------
consensus_13317#0 ATGCATGTGATGGAATAAATCTACCTCTATATAGTTATAGTGGTATTGTTAAAAAAAAAA 776
consensus_13317#1 ATCCATGTAATGGAATAAATCTACCTCTATATAGTTATAGTGGG---------------- 278
consensus_13317#2 ------------------------------------------------------------
consensus_13317#0 AAAAAA 782
consensus_13317#1 ------
consensus_13317#2 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||