These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1715 fasta sequence [AGACCACCTCCTCCTCGAGCTTCCCCTCCTCCCCCTCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCTTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGGCAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCACACAGATCTGAAACCTGAGAACATTCTCCTTGTTTCATCAGAATCTATCCGGGTGCCTGATTATAAGGTTACAATACGGCCCCCAAAGGATGGTTCCTTTTTTAAGAATCTTCCAAAATCTAGTGCTATCAAGCTGATTGATTTTGGAAGTACAACATTCGAACACCAAGACCACAATTATGTGGTATCAACAAGGCGTTATCGTGCCCCTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATC-TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGAT-GCCACAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAA-CCACCCA-AAAAAAAAGTGAAGATGTT-CCACAAAAATGAAATGTGCTAACTCGCATTCTGTTCGATGATGTG-CAAGGTAACTGTTGTATATAGACA-GAGTTCTACGACTGCCGATTTATTTTAACTGGGAGATATTTTTCAATTCTTAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK103207 [AGACCACCTCCTCCTCGAGCTTCCCCTCCTCCCCCTCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCTTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGGCAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCACACAGATCTGAAACCTGAGAACATTCTCCTTGTTTCATCAGAATCTATCCGGGTGCCTGATTATAAGGTTACAATACGGCCCCCAAAGGATGGTTCCTTTTTTAAGAATCTTCCAAAATCTAGTGCTATCAAGCTGATTGATTTTGGAAGTACAACATTCGAACACCAAGACCACAATTATGTGGTATCAACAAGGCGTTATCGTGCCCCTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGGGATCTTATAGATC TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGAT GCCACAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAA CCACCCA AAAAAAAAGTGAAGATGTT CCACAAAAATGAAATGTGCTAACTCGCATTCTGTTCGATGATGTG CAAGGTAACTGTTGTATATAGACA GAGTTCTACGACTGCCGATTTATTTTAACTGGGAGATATTT ] [+] EMBL CB675536 [ TCCTCGAGCTTCCCCTCCTCCCCCTCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCTTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTGCATTTATGC ] [+] EMBL OSS16515A [ ATTTTGGAAGTACAACATTCGAACACCAAGACCACAATNATGTGGTATCAACAAGGCATTATCGTGCCCCTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTNATTTGTGGAGTGTGGGATGCATTTNAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATAATTGTNAGAGCTGATCGCNGTGCTGAAANGTATTTCAGACGTG ] [+] EMBL CB000228 [ cAACACATGAAAATTTGGAGCATTTGGCTATCATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATC TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGAT GCCACAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAA CCACCCA AAAAAAAAGTGAAGATGTT CCACAAAAAAAAAA ] [+] EMBL CA998860 [ AACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATC TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGAT GCCACAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAA CCACCCA AAAAAAAAGTGAAGATGTT CCACAAAAAAAAAA ] [+] EMBL BI809955 [ ATCCCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGTTTGGACTGCCCAGAGGGGCCTCCCTCACGGGAAACCCTGAAGCCAGTCTGGAAATTGCCTCGTCT CAGAATCTGGTAATCCCACATGTTGATCATTCTGCTGGAGATCTTATAGATCTTTCTTCAAGCCCTTCTTCGGTATGATCCTGATGTGCGCCTAAAGGCACGTGAAGCTCTTCAACCCCCGTTCTTTACAAGATGGCCCCAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAACCCCCCCA AAAAAAAAGTGAAGATGTTCCCACCAAAATGAAATGTGCTAACTCGCCTTCTGTTCGATGATGTGCCAAGGTAACTGTTGTATATAGACACGAGTTCTACGACTGCCGATTTATTTGAACTGGGAGATATTTTTCAATTCTTAAAAAAAAAA ] [+] EMBL C22653 [ GACTGGCCAGAGGGGGCTGCCTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCNACATGTTGATCATTCTGCTGGAGATCTTATAGATC TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGAT GCCACAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCATTTTGATGTGTAAGAA CCACCCA AAAAAAAAGTGAAGATGTT CCACAAAAATGAAATGTGCTAACTCGCATTCTGTTCGATGATGTG CAAGGTAACTGTTGTATATAGACA GAGTTCTACGACTGCCGATTTATTTTAACTGGGNGATATTTTTCAA AAAAAAAAAAAAAAAAAAAA] [+] EMBL CA998821 [ gGGAAATTGGCTGAGATGCAGAAGGTGGTAATGC ACATGTAGATCATTCTGCTGGAGATCTTATAGATC TTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCATAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAGGAT GCCACAAAAGATGTGGTTACTGATACTATACTGAGATTAAAATGCTCAGTGCTGAATTTCTTCATTTTGATGTGTAAGAA CCACCCACAAAAAAAAGTGAAGATGTT CCACAAAAATGAAATGTGCTAACTCGCATTCTGTTCGATGATGTG CAAGGAAACTGTTGTATATAGACA GAGTTCTACGACTGCCGATTTATTTTAACT ] consensusID : consensus_13324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1695 fasta sequence [TGTGCAAGGTAACTGTTGTATATAGACAGAGTTCTACGACTGCCGATTTATTTTAACTGGGAGATATTTTTCAATTCTTACAAGTTCCTGTCTTTAAACCTCACATTTTACTTCATACTAATTTTTGCAAGACTGCCCAGTACTAGCAGGTAGCATGCAGAAATCTCAACTTGGTGGAGTCAATTGAGGATAGAGGGAATGCCAGTGGCTCTCATGAAAGATTGGTACACTATATTTGATGGTGAGCTGGTGATATAAGGTGAGCATTGCATTCTGACCATGTCCTGTTTGGTGTGGAGATAGGCTTATCAATATAATTTTATGTGCATTTAGGATCTCAGTATTTCTCGTGAAAATTGGTGATGGCCTGTTCACTTGACCTTCATGTCCATTCTATTTTACCTTGAAATGCATGATTAGCCCTGGAAACTAACCGGACGTTAGAGTTACACCCTGGTGGGTTTTGCTTGTGACTGGTCATATTTCTTAAAACAAGTCTCGGGTGTTGGATAAAAGTTTGGTAATTAACTGAGCTTTTGAGTCTGACACTTGGCTTGGAAAGGTTTGCGACAACTTTGAAATTGTGGACAGTAGTCTAAATCTCAAGATGTGCTCAACTTTGAAATATTGTCAACTGTGACTAAAGTCCAGAATCCTTGATAGCAGCTGATATATATTTAATTTACCTGAATATACCGTAAAGTACTGGCTTTAAAATCTTACTGGTTCCCATATTACTAGCAGCCACCAAGCTCTTGGATTGGAGATGTTTGTTAGATAAATCCTTGTGGGTTTTGAGCTTAAAACTATACTCAACCTGTGTCTATCGTTTGCGCCAGGTGAGCTTGTTCTTAATATCTTACAAAAGTCATTTCCTTTATCAAACTTTAGTGATGTGATGATTGTATTCATCTATTGCTTGTTTCTTCTTTCTATAAAGGCTCATTACTTAAAAGTTATCTTCTGGCAAAAAAAAAGACTGTTATTTGGTCTGATAACATCTTATTGGCTGCTACAATATCTTCTTTGACAAACTGAGTATTTGAAATCTGCTGGAAAATGTTTTACAACTATATTTAAGCAAGGACGAGTA-TTTTTTTTAATTTATCGTTTTCATTTTTGCAATTGAGTGAAACTACCGTTGAAGGTAATTTATCAACATCGAGTGTCAACACTAGTGAAACAAAATTAGTCCGGCTTGTTTTGTTGATTAAAGATGAAATCATTCTATAGGCAAGATAGACTAACCCCAGAATGCTGGTAGTTTAGGCTCGTTTTGGACATGCGAAAGATTTTACTCATCGAAGGTGGATTTGGAGAGCTGCTGCTTCCTACTGTGAATGGATGAGCAGCTGGTAAATGTTTTACTCATTGGGCTACGTGACGTCAGCCCAAAGATCGCCTCCAAAGCTGTAGCAGCGGGTCAATTGTACAAGAGCCTGTAACTCTGTAAGGTATGATATACTAACCCTTCGGAACGGGCGCCAACGCTTCCATCGTCATGTTACATGAGATCGCGTTCGAAGACGGCGAGCAGCA-GGTTTGATCACAGGTTTCGAACCTGGCA-TTCTCGTATAGTCGTATTTGCTTCGATCATCATATGTTACAGAGATCGC-GTTTG-TTTGAAGACGGCGAGCAGCGG-TTTTGAT-CACA-GGTTTCGAACCAACAACCCTGTACTAATATATACTACTGCAT] [+] EMBL AK106580 [TGTGCAAGGTAACTGTTGTATATAGACAGAGTTCTACGACTGCCGATTTATTTTAACTGGGAGATATTTTTCAATTCTTACAAGTTCCTGTCTTTAAACCTCACATTTTACTTCATACTAATTTTTGCAAGACTGCCCAGTACTAGCAGGTAGCATGCAGAAATCTCAACTTGGTGGAGTCAATTGAGGATAGAGGGAATGCCAGTGGCTCTCATGAAAGATTGGTACACTATATTTGATGGTGAGCTGGTGATATAAGGTGAGCATTGCATTCTGACCATGTCCTGTTTGGTGTGGAGATAGGCTTATCAATATAATTTTATGTGCATTTAGGATCTCAGTATTTCTCGTGAAAATTGGTGATGGCCTGTTCACTTGACCTTCATGTCCATTCTATTTTACCTTGAAATGCATGATTAGCCCTGGAAACTAACCGGACGTTAGAGTTACACCCTGGTGGGTTTTGCTTGTGACTGGTCATATTTCTTAAAACAAGTCTCGGGTGTTGGATAAAAGTTTGGTAATTAACTGAGCTTTTGAGTCTGACACTTGGCTTGGAAAGGTTTGCGACAACTTTGAAATTGTGGACAGTAGTCTAAATCTCAAGATGTGCTCAACTTTGAAATATTGTCAACTGTGACTAAAGTCCAGAATCCTTGATAGCAGCTGATATATATTTAATTTACCTGAATATACCGTAAAGTACTGGCTTTAAAATCTTACTGGTTCCCATATTACTAGCAGCCACCAAGCTCTTGGATTGGAGATGTTTGTTAGATAAATCCTTGTGGGTTTTGAGCTTAAAACTATACTCAACCTGTGTCTATCGTTTGCGCCAGGTGAGCTTGTTCTTAATATCTTACAAAAGTCATTTCCTTTATCAAACTTTAGTGATGTGATGATTGTATTCATCTATTGCTTGTTTCTTCTTTCTATAAAGGCTCATTACTTAAAAGTTATCTTCTGGCAAAAAAAAAGACTGTTATTTGGTCTGATAACATCTTATTGGCTGCTACAATATCTTCTTTGACAAACTGAGTATTTGAAATCTGCTGGAAAATGTTTTACAACTATATTTAAGCAAGGACGAGTA TTTTTTTTAATTTATCGTTTTCATTTTTGCAATTGAGTGAAACTACCGTTGAAGGTAATTTATCAACATCGAGTGTCAACACTAGTGAAACAAAATTAGTCCGGCTTGTTTTGTTGATTAAAGATGAAATCATTCTATAGGCAAGATAGACTAACCCCAGAATGCTGGTAGTTTAGGCTCGTTTTGGACATGCGAAAGATTTTACTCATCGAAGGTGGATTTGGAGAGCTGCTGCTTCCTACTGTGAATGGATGAGCAGCTGGTAAATGTTTTACTCATTGGGCTACGTGACGTCAGCCCAAAGATCGCCTCCAAAGCTGTAGCAGCGGGTCAATTGTACAAGAGCCTGTAACTCTGTAAGGTATGATATACTAACCCTTCGGAACGGGCGCCAACGCTTCCATCGTCATGTTACATGAGATCGCGTTCGAAGACGGCGAGCAGCA GGTTTGATCACAGGTTTCGAACCTGGCA TTCTCGTATAGTCGTATTTGCTTCGATCATCATATGTTACAGAGATCGC GTTTG TTTGAAGACGGCGAGCAGCGG TTTTGAT CACA GGTTTCGAACCAACAACCCTGTACTAATATATACTACTGCAT] [+] EMBL CA765280 [ TATTGCTTGTTTCTTCCTTCTATAAAGGCTCATTACTCAAAAGTTATCTTCTGGCAAAAAAAAAGACTGTTATTTGGTCTGATAACATCTTATTGGCTGCTACAATATCTTCTTTGACAAACTGAGTATTTGAAATCTGCTGGAAAATGTTTTACAACTATATTTAAGCAAGGACGAGTATTTTTTTTTAATTTATCGTTTTCATTTTTGCAATTGAGTGATACTACCGTTGAAGATAATTTATCAACATCGAGTGTCAACACTAGTGAAACAAAATTAGTCCGGCTTGTTTTGTTGATTAAAGATGAAATCATTCTATAGGCAAGATAGACTAACCCCAGAGTGCTGGTAGTTTAGGCTCGTTTTGGACATGCGAAAGATTTTACTCATCGAAGGTGGATTTGGAGAGCTGCTGCTTCCTACTGTGAATGGATGAGTAGCTGGTAAATATTTTACTCATTGGGCTACGTGACGTCAGCCCAAAGATCGCCTCCAAAGCTGTAGCAGCGGGTCAATTGTACAAGAGCCTGTAACTCTGTAAGGTATGATCTACTAACCCTTCGGAACGGGCGCCAACGCTTCCATCGTCATGTTACATGAGATCGCGTTCGAAGACGGCGAGCAGCAGGGTTTGATCACAGGTTTCGAACCTGGCATTTCTCGTATAGTCGTATTTGCTTCGATCATCATATGNTACAGAGATCGCGGTTTGNTTTGAAGACGGCGAGCAGCGGNTTTTGATCCACAGGGTTTCGAACCAACAACCCTGNACTAATATATACTACT ] consensusID : consensus_13324#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence [CCCTCTAATGCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCCTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCAC] [+] EMBL CB661364 [CCCTCTAATGCTTTCCAAATTTCCCCAATCTCGCGTCGCTTCCTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGGCGACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTCGACTCTGCAATGGAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCGGCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCAATCTTTCGCCTCCCTGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCAAGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGGGACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTCCCTTCAGAAATATCGAGAGGCTGCTATGATTGAAATTGATGTGCTTCAGAGGCTTGGGAAGCATGATTTTACTGGTAGCCGCTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTTATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTGCATTTATGCATGACCTGCGACTTATTCAC] consensusID : consensus_13324#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [TTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTTTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAGTATGTATACAAGGTCTTCGTTATAGTTTCATGATTTATTATAATCTAAGATAAGATGGTTTACATCTAGGCTTAGGTTGCTGCTGAGTTTCATTTGAAGTTCTTTCAAATTATCAATCACTTGCATGTACTTGTTACTTCTTTTTTACAGTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCCCGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATTTTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTTTTCAACACCCGTTCTTTACAAGATGCCCCAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTTTTCATTTTGATGTGTAAGACCCCCCCAAAAAAAAAAGTGAAGATGTTCCCCAAAAATGAAATGTGCTAACTCGCATTCTGTTTGATGATGTGCAAGGTAA] [-] EMBL CB661363 [TTCATGTGATTTGTGGAGTGTGGGATGCATTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATTTGGCTATGATGGAGAGAGTTTTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGAGTATGTATACAAGGTCTTCGTTATAGTTTCATGATTTATTATAATCTAAGATAAGATGGTTTACATCTAGGCTTAGGTTGCTGCTGAGTTTCATTTGAAGTTCTTTCAAATTATCAATCACTTGCATGTACTTGTTACTTCTTTTTTACAGTCGCCGTGCTGAAAAGTATTTCAGACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGCCTCCCGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCAACATGTTGATCATTCTGCTGGAGATCTTATAGATTTTCTTCAAGGCCTTCTTCGGTATGATCCTGATGCGCGCCTAAAGGCACGTGAAGCTTTTCAACACCCGTTCTTTACAAGATGCCCCAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTTTTCATTTTGATGTGTAAGACCCCCCCAAAAAAAAAAGTGAAGATGTTCCCCAAAAATGAAATGTGCTAACTCGCATTCTGTTTGATGATGTGCAAGGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13324#0 -AGACCACCTCCTCCTCGAGCTTCCCCTCCTCCCCCTCTTTCCAAATTTCCCCAATCTCG 59 consensus_13324#2 ---------------------------CCCTCTAATGCTTTCCAAATTTCCCCAATCTCG 33 consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 TGTGCAAGGTAACTGTTGTATATAGACAGAGTTCTACGACTGCCGATTTATTTTAACTGG 60 consensus_13324#0 CGTCGCTTCTTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGG 119 consensus_13324#2 CGTCGCTTCCTCCCCGAATTCCCCAACCTCGCATCCCGATTCCTCCCGCGGATCGTGCGG 93 consensus_13324#3 -----------------------------------TTCATGTGATTTGTGGAGTGTGGGA 25 consensus_13324#1 GAGATATTTTT---CAATTCTTACAAGTTCCTGTCTTTAAACCTCACATTTTACTTCATA 117 * * consensus_13324#0 CG-ACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTC 178 consensus_13324#2 CG-ACCTCGCCCAAAATCCCCCGCCGGATTGGCCTCGCCGATGGCTTAATTGGCGATTTC 152 consensus_13324#3 TGCATTTTAGTTGAACTCTGCT--CGGGTGAAGCTC-TCTTTCAAACACATGAAAATTTG 82 consensus_13324#1 CTAATTTTTGCAAGA--CTGCC--CAGTACTAGCAGGTAGCATGCAGAAATCTCAACTTG 173 * * * * * * * * * * * ** consensus_13324#0 GACTCTGCAATG-GAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCG 237 consensus_13324#2 GACTCTGCAATG-GAGGCGCAGTGGCTCGCCGAGTACCCGCACCAGGGCGCCGACAAGCG 211 consensus_13324#3 GAGCATTTGGCT-ATGATGGAGAGAGTTTT--AGGTCCCCTTCCAAA------ACATATG 133 consensus_13324#1 GTGGAGTCAATTGAGGATAGAGGGAATGCC--AGTGGCTCTCATGAAAGATTGGTACACT 231 * * ** * * ** * * consensus_13324#0 GCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAA 297 consensus_13324#2 GCCGCGGAAGCGGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAA 271 consensus_13324#3 ATTGTCAGAGCTG---------AGTATGTATACAAGGTCTTCGTTAT---AGTTTCATG- 180 consensus_13324#1 ATATTTGATGGTGA--------GCTGGTGATATAAGGTGAGCATTGCATTCTGACCATGT 283 * * ** * * * * consensus_13324#0 GGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTT 357 consensus_13324#2 GGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTT 331 consensus_13324#3 ---ATTTATTATAATCTAAGATAAGATGGTTTACATCTAGGCTTAGGTTGCTGCTGAGTT 237 consensus_13324#1 CCTGTTTGGTGTGGAGATAGGCTTATCAATATAATTTTATGTGCATTTAGGATCTCAGTA 343 ** * * * * * * * * * * consensus_13324#0 TCTGCCA---CCGCCACCAATCTATTATACA--GGACCACCACGCAATCTTTCGCCTCCC 412 consensus_13324#2 TCTGCCA---CCGCCACCAATCTATTATACA--GGACCACCACGCAATCTTTCGCCTCCC 386 consensus_13324#3 TCATTTG---AAGTT-CTTTCAAATTATCAA--TCACTTGCATGTACTTGTTACTTCTTT 291 consensus_13324#1 TTTCTCGTGAAAATTGGTGATGGCCTGTTCACTTGACCTTCATGTCCATTCTATTTTACC 403 * * * * ** ** * * consensus_13324#0 TGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCA 472 consensus_13324#2 TGGAGGCCAGATGACAAGGATGGACACTATGTTTTCGCAGTTGGGGAGAACCTTACACCA 446 consensus_13324#3 TTTA---CAGTCGCCGTGC-TGAAAAGTAT--TTCAGACGTGGATTAAGGTTGGACTGGC 345 consensus_13324#1 TTGAAATGCATGATTAGCCCTGGAAACTAA---CCGGACGT----TAGAGTT--ACACCC 454 * * ** * * ** * ** * ** consensus_13324#0 AGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGG 532 consensus_13324#2 AGATATAGAATACTTAGCAAGATGGGTGAAGGGACTTTTGGACAAGTCTTAGAGTGCTGG 506 consensus_13324#3 CAGAGGGGGCTGCCTCCCGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGA 405 consensus_13324#1 TGGTGGGTTTTGCTT---GTGACTGGTCATA--TTTCTTAAAACAAGTCTCGGGTGTTGG 509 * * * ** * * * * * ** * consensus_13324#0 GACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTC--CCTTCAGAAATATC 590 consensus_13324#2 GACTTGGAACACCAAGAGACAGTGGCTATCAAAATTGTGCGCTC--CCTTCAGAAATATC 564 consensus_13324#3 ATCTGGTAATGC---AACATGTTGATCATTCTGCTGGAG--ATC--TTATAGATTTTCTT 458 consensus_13324#1 A--TAAAAGTTTGGTAATTAACTGAGCTTTTGAGTCTGACACTTGGCTTGGAAAGGTTTG 567 * * * ** * * * * * consensus_13324#0 GAGAGGCTGCTATGAT-TG-AAATTGATGTGCTTC-AGAGGCTTGGGAAGCATGATTTTA 647 consensus_13324#2 GAGAGGCTGCTATGAT-TG-AAATTGATGTGCTTC-AGAGGCTTGGGAAGCATGATTTTA 621 consensus_13324#3 CAAGGCCTTCTTCGGTATG-ATCCTGATGCGCGCCTAAAGGCACGTGAAGC------TTT 511 consensus_13324#1 CGACAACTTTGAAATTGTGGACAGTAGTCTAAATCTCAAGATGTGCTCAACTTTGAAATA 627 ** * ** * * * * ** * * * * consensus_13324#0 CTGGTAGCCGCTGTG----TGCAA-ATACGG-AATTGGTTTGAC---TATCGTAATCATA 698 consensus_13324#2 CTGGTAGCCGCTGTG----TGCAA-ATACGG-AATTGGTTTGAC---TATCGTAATCATA 672 consensus_13324#3 TCAACACCCGTTCTT----TACAAGATGCCCCAGAAGATGTGGT---TACTGAGACTA-- 562 consensus_13324#1 TTGTCAACTGTGACTAAAGTCCAGAATCCTTGATAGCAGCTGATATATATTTAATTTACC 687 * * * * ** ** * * ** ** * consensus_13324#0 TATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTT 758 consensus_13324#2 TATGTATAGTATTTGAGAGGCTCGGACCAAGCTTATATGACTTCCTCCGAAAGAATAGTT 732 consensus_13324#3 ----TACTGAGATTAAAATGCTC-----AATGCTGTATTTTTTCATTTTGATGTGTAAG- 612 consensus_13324#1 TGAATATACCG--TAAAGTACTGGCTTTAAAATCTTACTGGTTCCCAT--ATTACTAGC- 742 ** * * ** ** ** *** * ** consensus_13324#0 ATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGGCAAATATTAGAGTCTGTTG 818 consensus_13324#2 ATCGTGCATTTCCGATCGACCTTGTTCGGGAATTTGCCAGACAAATATTAGAGTCTGTTG 792 consensus_13324#3 -----ACCCCCCCAAAAAAAAAAGTGAAGATGTTCCCCAAAAATGAAATGTGCTAACTCG 667 consensus_13324#1 -----AGCCACCAAGCTCTTGGATTGGAGATGTTTGTTAGATAAATCCTTGTGGGTTTTG 797 * * * ** * * * * * consensus_13324#0 CATTTA--TGCATGACCTGCGACTTATTCACACAGATC-TGAAACCTGAGAACATTCTCC 875 consensus_13324#2 CATTTA--TGCATGACCTGCGACTTATTCAC----------------------------- 821 consensus_13324#3 CATTCTGTTTGATGATGTGCAAGGTAA--------------------------------- 694 consensus_13324#1 AGCTTA---AAACTATACTCAACCTGTGTCTATCGTTTGCGCCAGGTGAGCTTGTTCTTA 854 * * * * * * consensus_13324#0 TTGTTTCATCAGAATCTATCCGGGTGCCTGATTATAAGGTTACAATACGGCCCCCAAAGG 935 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 ATATCTTACAAAAGTCATTTCCTTTATCAAACTTTAGTGATGTGATGATTGTATTCATCT 914 consensus_13324#0 ATGGTTCCTTTTTTAAGAATCTTCCAAAATCTAGTGCTATCAAGCTGATTGATTTTGGAA 995 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 ATTGCTTGTTTCTTCTT--TCTATAAAGGCTCATTACTTAAAAGTTATCTTCTGGCAAAA 972 consensus_13324#0 GTACAACATTCGAACACCAAGACCACAATTATGTGGTATCAACAAGGCGTTATCGTGCCC 1055 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 AAAAAGACTGTTATTTGGTCTGATAACATCTTATTGGCTGCTACAATATCTTCTTTGACA 1032 consensus_13324#0 CTGAAGTTATCCTTGGTCTTGGGTGGAATTATTCATGTGATTTGTGGAGTGTGGGATGCA 1115 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 AACTGAGTATTTGAAATCTGCTGGAAAATGTTTTACAACTATATTTAAGCAAGGACGAGT 1092 consensus_13324#0 TTTTAGTTGAACTCTGCTCGGGTGAAGCTCTCTTTCAAACACATGAAAATTTGGAGCATT 1175 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 ATTTTTTTTAATTTATCGTTTTCATTTTTGCAATTGAGTGAAACTACCGTTGAAGGTAAT 1152 consensus_13324#0 TGGCTATGATGGAGAGAGTTCTAGGTCCCCTTCCAAAACATATGATTGTCAGAGCTGATC 1235 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 TTATCAACATCGAGTGTCAACACTAGTGAAACAAAATTAGTCCGGCTTGTTTTGTTGATT 1212 consensus_13324#0 GCCGTGCTGAAAAGTATTTCAG--ACGTGGATTAAGGTTGGACTGGCCAGAGGGGGCTGC 1293 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 AAAGATGAAATCATTCTATAGGCAAGATAGACTAACCCCAGAATGCTGGTAGTTTAGGCT 1272 consensus_13324#0 CTCACGGGAAAGCCTGAAGGCAGTCTGGAAATTGCCTCGTCTGCAGAATCTGGTAATGCA 1353 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 CGTTTTGGACATGCGAAAGATTTTACTCATCGAAGGTGGATTTGGAGAGCTGCTGCTTCC 1332 consensus_13324#0 ACATGTTGATCATTCTGCTGGAGATCTTATAGATCTTCTTCAAGGCCTTCTTCGGTATGA 1413 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 TACTGTGAATGGATGAGCAGCTGGTAAATGTTTTACTCATTGGGCTACGTGACGTCAGCC 1392 consensus_13324#0 TCCTGATGCGCGCCTAAAGGCACGTGAAGCTCTTCAACACCCGTTCTTTACAAGATGCCA 1473 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 CAAAGATCGCCTCCAAAGCTGTAGCAGCGGGTCAATTGTACAAGAGCCTGTAACTCTGTA 1452 consensus_13324#0 CAGAAGATGTGGTTACTGAGACTATACTGAGATTAAAATGCTCAATGCTGTATTTCTTCA 1533 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 AGGTATGATATACTAACCCTTCGGAACGGGCGCCAACGCTTCCATCGTCATGTTACATGA 1512 consensus_13324#0 TTTTGATGTGTAAGA-ACCACCCAAAAAAAAAGTGAAGATGTTCCACAAAAATGAAATGT 1592 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 GATCGCGTTCGAAGACGGCGAGCAGCAGGTTTGATCACAGGTTTCGAACCTGGCATTCTC 1572 consensus_13324#0 GCTAACTCGCATTCTGTTCGATGATGTGCAAGGTAACTGTTGTATATAGACAGAGTTCTA 1652 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 GTATAGTCGTATTTGCTTCGATCATCATATGTTACAGAGATCGCGTTTGTTTGAAGACGG 1632 consensus_13324#0 CGACTGCCGATTTATTTTAACTGGGAGATATTTTTCAATTCTTAAAAAAAAAAAAAAAAA 1712 consensus_13324#2 ------------------------------------------------------------ consensus_13324#3 ------------------------------------------------------------ consensus_13324#1 CGAGCAGCGGTTTTGATCACAGGTTTCGAACCAACAACCCTGTACTAATATATACTACTG 1692 consensus_13324#0 AAA 1715 consensus_13324#2 --- consensus_13324#3 --- consensus_13324#1 CAT 1695 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||