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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13345#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1973 fasta sequence
[CCGCCGCCGCTCCATGGACGCCGGCGACACATCCGCCGCCGCCGCTGTAGCCCCTACCCCGGCGCGGCTGCGGGAAGCGCTCGCCGCCCTCTCCAAGGCGTTCGAGTCCGGGGATTGCTCCGATGGATCCGCCGCGGCGGCCGTCTCCGACCTCCTCAACGCCGCCGCCGATGCAGCTGATGCGGAGGCCGACGCCGAAGACGAGGCGGCGGCCGGGGTCGTCGAGGAGATGCTCCGGGAGGTGCACGCGTTCCTCTCGTCCCCGTCCTCGAATCAGTTGGCCATAGATGCTCTCTCACTAGAGCTGGTAAAACCTGTGGCGAAGCTGGGGGCACTGATGAGGAATTGCTGGGACATTGCCAACGCTATCATTGAATTCTTCGTGTCAAACTGCAACCCGAGGGACATGCTCTCCATCCTATGTGAGGCAGTAGATGCACCATTGGCATCAAATGGCTCAGTGTACTTTGTTCTTCTATTCAAGGAGCTAGCCAAAGTGCTTGTTTTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGTCACACTTCCTGCTGTCCTTCGAGTTATGAATGCTGTTATACCAGAATGTGACGAGGAACATGGAAAGATCATCGTTGATATGTACAATGCAGCACTTAGAATTGGCAATGCCATTCAAGAAATGTGCAAAAAAATGGTAAACCAGACGAATGAAGAACTCTGTTCTGTACTTAGTCTATACTCCCTTCAGAACATAGCTCTTGTATCAAGATGCAAACAACAGCATATTCTCTCTGCTTGTGGTTCAGTTGTTCTTCAGCATTCAAAAATTCTGACATTTTGTGGGTTCACTTATTTGGGTCTTTTGACTGGTAATGATGTCACCTCAGCCACCGATAAGATTTCAAAAGATGAAGATGCGGATTTGCTCGAGTGCTTTTCTTTTGCAATGAATGGTGCAAATCTTGCAGTTATCTGGACCTATATGGATGATGAAATCTCAAAATATGCTGGCGCTGAGCTGGAATCAGCGCTGAAAGATGTTAAGGGCAACCATACGAGGATGTGGCAAGCAATTAACATTCTTAGATATGTGTTGTCTTCAACTCATTACCCATGGGTAATAAAATCCCACAGTTTGGACTTACTGCTGACTATAGCTAATGAAAGTCGTATTGAGGAAATCAATGATCATGTAGATGTTTCATCTTCTGGTCCTCAAATTTTTGCAACACTCAAGGCCATTGAAAGTGTCATGATTTCCGCCCCAGATGCATTAATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTCAATGGTGCCATCCTCTCAGAGATTCCACATCTTACAGGCTCTTATAAAGAACAGCATCTTCCCTTCATTGACTGCAATTCTCCTAGATCTGGTGAAGGATGAAGTTTCGAGAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGCTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGCCATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTTGCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAGCTGGCAGAGGAAAAAATGAAAGGTTTCTAACGTTTTCAGTTCACTGGTTTTTGTACAATATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTTGAAGTTGCGTTTTTTT-TGTTGTACAGTGAAACTGTCGTCCTTCATAAAAAA]
[+] EMBL AK073404 [CCGCCGCCGCTCCATGGACGCCGGCGACACATCCGCCGCCGCCGCTGTAGCCCCTACCCCGGCGCGGCTGCGGGAAGCGCTCGCCGCCCTCTCCAAGGCGTTCGAGTCCGGGGATTGCTCCGATGGATCCGCCGCGGCGGCCGTCTCCGACCTCCTCAACGCCGCCGCCGATGCAGCTGATGCGGAGGCCGACGCCGAAGACGAGGCGGCGGCCGGGGTCGTCGAGGAGATGCTCCGGGAGGTGCACGCGTTCCTCTCGTCCCCGTCCTCGAATCAGTTGGCCATAGATGCTCTCTCACTAGAGCTGGTAAAACCTGTGGCGAAGCTGGGGGCACTGATGAGGAATTGCTGGGACATTGCCAACGCTATCATTGAATTCTTCGTGTCAAACTGCAACCCGAGGGACATGCTCTCCATCCTATGTGAGGCAGTAGATGCACCATTGGCATCAAATGGCTCAGTGTACTTTGTTCTTCTATTCAAGGAGCTAGCCAAAGTGCTTGTTTTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGTCACACTTCCTGCTGTCCTTCGAGTTATGAATGCTGTTATACCAGAATGTGACGAGGAACATGGAAAGATCATCGTTGATATGTACAATGCAGCACTTAGAATTGGCAATGCCATTCAAGAAATGTGCAAAAAAATGGTAAACCAGACGAATGAAGAACTCTGTTCTGTACTTAGTCTATACTCCCTTCAGAACATAGCTCTTGTATCAAGATGCAAACAACAGCATATTCTCTCTGCTTGTGGTTCAGTTGTTCTTCAGCATTCAAAAATTCTGACATTTTGTGGGTTCACTTATTTGGGTCTTTTGACTGGTAATGATGTCACCTCAGCCACCGATAAGATTTCAAAAGATGAAGATGCGGATTTGCTCGAGTGCTTTTCTTTTGCAATGAATGGTGCAAATCTTGCAGTTATCTGGACCTATATGGATGATGAAATCTCAAAATATGCTGGCGCTGAGCTGGAATCAGCGCTGAAAGATGTTAAGGGCAACCATACGAGGATGTGGCAAGCAATTAACATTCTTAGATATGTGTTGTCTTCAACTCATTACCCATGGGTAATAAAATCCCACAGTTTGGACTTACTGCTGACTATAGCTAATGAAAGTCGTATTGAGGAAATCAATGATCATGTAGATGTTTCATCTTCTGGTCCTCAAATTTTTGCAACACTCAAGGCCATTGAAAGTGTCATGATTTCCGCCCCAGATGCATTAATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTCAATGGTGCCATCCTCTCAGAGATTCAACATCTTACAGGCTCTTATAAAGAACAGCATCTTCCCTTCATTGACTGCACTTCTCCTAGATCTGGTGAAGGATGAAGTTTCGAGAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGCTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGCCATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTTGCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAGCTGGCAGAGGAAAAGATGAAAGGTTTCTAACGTTTTCAGTTCACTGGTTTTTGTACAATATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTTGAAGTTGCGTTTTTTT ]
[+] EMBL CB636198 [ CGGCGACACATCCGCCGCCGCCGCTGTAGCCCCTACCCCGGCGCGGCTGCGGGAAGCGCTCGCCGCCCTCTCCAAGGCGTTCGAGTCCGGGGATTGCTCCGATGGATCCGCCGCGGCGGCCGTCTCCGACCTCCTCAACGCCGCCGCCGATGCAGCTGATGCGGAGGCCGACGCCGAAGACGAGGCGGCGGCCGGGGTCGTCGAGGAGATGCTCCGGGAGGTGCACGCGTTCCTCTCGTCCCCGTCCTCGAATCAGTTGGCCATAGATGCTCTCTCACTAGAGCTGGTAAAACCTGTGGCGAAGCTGGGGGCACTGATGAGGAATTGCTGGGACATTGCCAACGCTATCATTGAATTCTTCGTGTCAAACTGCAACCCGAGGGACATGCTCTCCATCCTATGTGAGGCAGTAGATGCACCATTGGCATCAAATGGCTCAGTGTACTTTGTTCTTCTATTCAAGGAGCTAGCCAAAGTGCTTGTTTTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGTCACACTTCCTGCTGTCCTTCGAGTTATGAATGCTGTTATACCAGAATGTGA ]
[+] EMBL CB636256 [ CGGCGACACATCCGCCGCCGCCGCTGTAGCCCCTACCCCGGCGCGGCTGCGGGAAGCGCTCGCCGCCCTCTCCAAGGCGTTCGAGTCCGGGGATTGCTCCGATGGATCCGCCGCGGCGGCCGTCTCCGACCTCCTCAACGCCGCCGCCGATGCAGCTGATGCGGAGGCCGACGCCGAAGACGAGGCGGCGGCCGGGGTCGTCGAGGAGATGCTCCGGGAGGTGCACGCGTTCCTCTCGTCCCCGTCCTCGAATCAGTTGGCCATAGATGCTCTCTCACTAGAGCTGGTAAAACCTGTGGCGAAGCTGGGGGCACTGATGAGGAATTGCTGGGACATTGCCAACGCTATCATTGAATTCTTCGTGTCAAACTGCAACCCGAGGGACATGCTCTCCATCCTATGTGAGGCAGTAGATGCACCATTGGCATCAAATGGCTCAGTGTACTTTGTTCTTCTATTCAAGGAGCTAGCCAAAGTGCTTGTTTTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGTCACACTTCCTGCTGTCCTTCGAGTTATGAATGCTGTTATACCA ]
[+] EMBL CA998320 [ GTTAAGGGCAACCATACGAGGATGTGGCAAGCAATTAACATTCTTAGATATGTGTTGTCTTCAACTCATTACCCATGGGTAATAAAATCCCACAGTTTGGACTTACTGCTGACTATAGCTAATGAAAGTCGTATTGAGGAAATCAATGATCATGTAGATGTTTCATCTTCTGGTCCTCAAATTTTTGCAACACTCAAGGCCATTGAAAGTGTCATGATTTCCGCCCCAGATGCATTAATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTCAATGGTGCCATCCTCTCAGAGATTCCACATCTTACAGGCTCTTATAAAGAACAGCATCTTCCCTTCATTGACTGCAATTCTCCTAGATCTGGTGAAGGATGAAGTTTCGAGAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGCTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTATTATCAGCTTTGAATTTGCTGCGATTTGT ]
[+] EMBL CA998502 [ GTTAAGGGCAACCATACGAGGATGTGGCAAGCAATTAACATTCTTAGATATGTGTTGTCTTCAACTCATTACCCATGGGTAATAAAATCCCACAGTTTGGACTTACTGCTGACTATAGCTAATGAAAGTCGTATTGAGGAAATCAATGATCATGTAGATGTTTCATCTTCTGGTCCTCAAATTTTTGCAACACTCAAGGCCATTGAAAGTGTCATGATTTCCGCCCCAGATGCATTAATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTCAATGGTGCCATCCTCTCAGAGATTCCACATCTTACAGGCTCTTATAAAGAACAGCATCTTCCCTTCATTGACTGCAATTCTCCTAGATCTGGTGAAGGATGAAGTTTCGAGAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTT ]
[-] EMBL CB636257 [ AGATCTGGTGAAGGATGAAGTTTCGAGAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGCTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGCCATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTTGCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAGCTGGCAGAGGAAAAAATGAAAGGTTTCTAACGTTTTCAGTTCACTGGTTTTTGTACAATATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTTGAAGTTGCGTTTTTTA TGTTGTACAGTGAAACTGTCGTCCTTCATAAAAAA]
[-] EMBL CB636199 [ ATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGCTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGCCATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTTGCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAGCTGGCAGAGGAAAAAATGAAAGGTTTCTAACGTTTTCAGTTCACTGGTTTTTGTACAATATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTTGAAGTTGCGTTTTTTTATGTTGTACAGTGATACTGTCGTCCTTCATAAAAAA]
consensusID : consensus_13345#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1469 fasta sequence
[ATCTTCTGGTCCTCAAATTTTTGCAACACTCAAGGCCATTGAAAGTGTCATGATTTCCGCCCCAGATGCATTAATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTCAATGGTGCCATCCTCTCAGAGATTCAACATCTTACAGGCTCTTATAAAGAACAGCATCTTCCCTTCATTGACTGCACTTCTCCTAGATCTGGTGAAGGATGAAGTTTCGAGAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGCTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTACCCTCTTTTTATGTCACTACTCATGAGGAGCATAAATATCTGTTGGAAGAACTCAGGCAACAGCAACATAGATGGAATAGCATTAGTTGATACAAGATGCCTGTTTCCGTATTAAAATAAAAGGAGGATGACTGTTGGGCAGGAATAGATCTAGATAAGACAGACATGAACTTGGAGACTTGTCTAAATCCACAGAAGGACGTCAAGGACTAGGAGAGTTCTGTTCATCTTTACCTTATTAAATCTCAGTGAACCAGCTGTGTCATCTTAGGCTCTTGAGAAATTAGCGAATGATTATAACAAATGGCTTCAATACTTATAAAGATACTCTTAACAACTGAATAAAATATAGAATAATTANAGTCTCAACTCCAATCCAAAACATTGAATATCGATCTATCATTTTTCCTTTTTCTTTTCGACTTAATTTGTCAGACTCTCGTAATCTCATTTTTGTAACTTTTAACATTGAATGAATTTATACTAGTAAATTGAGATGAGAAATGCATGTAAATTTTGTGGGAATATTTCATGTTAAATTTGATGTATAAATCAAAGCTGGATTGCGTGAATATCTGGATTCACCTTATATGTTGCCCACTTGTGTTGTGCTTCGTTATTCTTATGTGTCCTGCTAAAGTGGTAATTTTGTTTTACATCATTTTATGGCTTATGCCTAGAAAATAATCTGCCATGGTTCACTTTTTTTTATTTGTATGCAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGCCATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTTGCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAGCTGGCAGAGGAAAAGATGAAAGGTTTCTAACGTTTTCAGTTCACTGGTTTTTGTACAATATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTTGAAGTTG]
[+] EMBL CB651023 [ATCTTCTGGTCCTCAAATTTTTGCAACACTCAAGGCCATTGAAAGTGTCATGATTTCCGCCCCAGATGCATTAATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTCAATGGTGCCATCCTCTCAGAGATTCAACATCTTACAGGCTCTTATAAAGAACAGCATCTTCCCTTCATTGACTGCACTTCTCCTAGATCTGGTGAAGGATGAAGTTTCGAGAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGCTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTACCCTCTTTTTATGTCACTACTCATGAGGAGCATAAATATCTGTTGGAAGAACTCAGGCAACAGCAACATAGATGGAATAGCATTAGTTGATACAAGATGCCTGTTTCCGTATTAAAATAAAAGGAGGATGACTGTTGGGCAGGAATAGATCTAGATAAGACAGACATGAACTTGGAGACTTGTCTAAATCCACAGAAGGACGTCAAGGACTAGGAGAGTTCTGTTCATCTTTACCTTATTAAATCTCAGTGAACCAGCTGTGTCATCTTAGGCTCTTGAGAAATTAGCGAATGATTATAACAAATGGCTTCAATACTTATAAAGATACTCTTAACAACTGAATAAAATATAGAATAATTANAGTCT ]
[-] EMBL CB651024 [ ACAAATGGCTTCAATACTTATAAAGATACTCTTAACAACTGAATAAAATATAGAATAATTAAAGTCTCAACTCCAATCCAAAACATTGAATATCGATCTATCATTTTTCCTTTTTCTTTTCGACTTAATTTGTCAGACTCTCGTAATCTCATTTTTGTAACTTTTAACATTGAATGAATTTATACTAGTAAATTGAGATGAGAAATGCATGTAAATTTTGTGGGAATATTTCATGTTAAATTTGATGTATAAATCAAAGCTGGATTGCGTGAATATCTGGATTCACCTTATATGTTGCCCACTTGTGTTGTGCTTCGTTATTCTTATGTGTCCTGCTAAAGTGGTAATTTTGTTTTACATCATTTTATGGCTTATGCCTAGAAAATAATCTGCCATGGTTCACTTTTTTTTATTTGTATGCAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGCCATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTTGCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAGCTGGCAGAGGAAAAGATGAAAGGTTTCTAACGTTTTCAGTTCACTGGTTTTTGTACAATATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTTGAAGTTG]
consensusID : consensus_13345#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 847 fasta sequence
[CATTTACAAGACTGAACTATCATCAAAATCTGAAATTCAACTCGGAACTTTGAAATGTGACACTATTCTTTACCCTTTCAAATAGATCTGGATAAGTTTTATAGTTTTTTAAATATGAACTGATGTTCCATTGTTTATTTGTTGCATCCAGTCCAAACTTGCACAATGCCAGGGCACTGGAATGTCCATTCATAATTGAGCATATTTTCATTTTGCATTCAATATTTCCAGACGACAATATATCTCTACCTCCTTCCCTCGCTTCTGCTCTCTGGGTTCCTATGGTATATTGCTCACCTTTTTGTCATGACATTATGTTGCTTTAATACAGGCAGTAGATGCACCATTGGCATCAAATGGCTCAGTGTACTTTGTTCTTCTATTCAAGGAGCTAGCCAAAGGTATATGTTTTTATATGAAGATTTCCACAGCCATCTCTCTGCTCATCGTTTGGAAATTTTGGTTTCTAATGGATGAATTTCCAGATAGGAATTGAGATACTTAATGCTCTATGCCTATATATATATAAGTTTAGATATATTCGCTTGACATATGTTACACACCTTGTGTGAATATTAACTGGTTAACATTTGTATTATTAAATATGTTTTTTTTCTATTCTTCCTAGCTAATTGTGCTTTGGGCTAGTGCTTGTTTTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGTCACACTTCCTGCTGTCCTTCGAGTTATGAATGCTGTTATACCAGAATGTGACGAGGAACATGGAAAGATCATCGTTGATATGTACAATGCAGCACTTAGAATTGGCAATGCCCATTCAGAAATGTGCAAAAAAAATGGTTTGTTGAGTTAAATGCC]
[+] EMBL CB627041 [CATTTACAAGACTGAACTATCATCAAAATCTGAAATTCAACTCGGAACTTTGAAATGTGACACTATTCTTTACCCTTTCAAATAGATCTGGATAAGTTTTATAGTTTTTTAAATATGAACTGATGTTCCATTGTTTATTTGTTGCATCCAGTCCAAACTTGCACAATGCCAGGGCACTGGAATGTCCATTCATAATTGAGCATATTTTCATTTTGCATTCAATATTTCCAGACGACAATATATCTCTACCTCCTTCCCTCGCTTCTGCTCTCTGGGTTCCTATGGTATATTGCTCACCTTTTTGTCATGACATTATGTTGCTTTAATACAGGCAGTAGATGCACCATTGGCATCAAATGGCTCAGTGTACTTTGTTCTTCTATTCAAGGAGCTAGCCAAAGGTATATGTTTTTATATGAAGATTTCCACAGCCATCTCTCTGCTCATCGTTTGGAAATTTTGGTTTCTAATGGATGAATTTCCAGATAGGAATTGAGATACTTAATGCTCTATGCCTATATATATATAAGTTTAGATATATTCGCTTGACATATGTTACACACCTTGTGTGAATATTAACTGGTTAACATTTGTATTATTAAATATGTTTTTTTTCTATTCTTCCTAGCTAATTGTGCTTTGGGCTAGTGCTTGTTTTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGTCACACTTCCTGCTGTCCTTCGAGTTATGAATGCTGTTATACCAGAATGTGACGAGGAACATGGAAAGATCATCGTTGATATGTACAATGCAGCACTTAGAATTGGCAATGCCCATTCAGAAATGTGCAAAAAAAATGGTTTGTTGAGTTAAATGCC]
consensusID : consensus_13345#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 730 fasta sequence
[AACACTCAAGGCCATTGAAAGTGTCATGATTTCCGCCCCAGATGCATTAATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTCAATGGTGCCATCCTCTCAGAGATTCAACATCTTACAGGCTCTTATAAAGAACAGCATCTTCCCTTCATTGACTGCAATTCTCCTAGATCTGGTGAAGGA-TGAAG-TTTCGAGAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAG-CTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGCCATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTTGCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAGCTGGCAGAGGAAAAGATGAAAGGTTTCTAACGTTTTCAGTTCACTGGTTTTTGTACAATATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTTGAAGTTCAGGAATGTTC]
[-] EMBL CB627042 [AACACTCAAGGCCATTGAAAGTGTCATGATTTCCGCCCCAGATGCATTAATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTCAATGGTGCCATCCTCTCAGAGATTCAACATCTTACAGGCTCTTATAAAGAACAGCATCTTCCCTTCATTGACTGCAATTCTCCTAGATCTGGTGAAGGA TGAAG TTTCGAGAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAG CTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGCCATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTTGCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAGCTGGCAGAGGAAAAGATGAAAGGTTTCTAACGTTTTCAGTTCACTGGTTTTTGTACAATATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTTGAAGTTCAGGAATGTTC]
[+] EMBL BI805850 [ TGGTGAAGGATTGAAGTTTTCG GAGAGATTCGTCGAGCTGATCAGGATATTGTTGAATCGGATCAATTACAAGATGGTGGCGAATGGCCACCACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGACTGATCTTGAAGCCTCCAGAAGGTGGCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAAGATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGCCATTAAGACCCATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTTGCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAGCTGGCAGAGGAAAAGATGAAAGGTTTCTAACGTTTTCAGTTCACTGGTTTTTGTACAATATACTGCTGTCTCGAGGCAAAACATGAACCAGTTGTGAATATTATCCC ATGATTTGAAGTTCAGGAAaaaaa]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13345#0 CCGCCGCCGCTCCATGGACGCCGGCGACACATCCGCCGCCGCCGCTGTAGCCCCTACCCC 60
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 ------------------------------------------------------------
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 GGCGCGGCTGCGGGAAGCGCTCGCCGCCCTCTCCAAGGCGTTCGAGTCCGGGGATTGCTC 120
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 ------------------------------------------------------------
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 CGATGGATCCGCCGCGGCGGCCGTCTCCGACCTCCTCAACGCCGCCGCCGATGCAGCTGA 180
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 ------------------------------------------------------------
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 TGCGGAGGCCGACGCCGAAGACGAGGCGGCGGCCGGGGTCGTCGAGGAGATGCTCCGGGA 240
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 ------------------------------------------------------------
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 GGTGCACGCGTTCCTCTCGTCCCCGTCCTCGAATCAGTTGGCCATAGATGCTCTCTCACT 300
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 ------------------------------------------------------------
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 AGAGCTGGTAAAACCTGTGGCGAAGCTGGGGGCACTGATGAGGAATTGCTGGGACATTGC 360
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 ------------------------------------------------------------
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 CAACGCTATCATTGAATTCTTCGTGTCAAACTGCAACCCGAGGGACATGCTCTCCATCCT 420
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 ------------------------------------------------------------
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 ATGTGAGGCAGTAGATGCACCATTGGCATCAAATGGCTCAGTGTACTTTGTTCTTCTATT 480
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 ------------------------------------------------------------
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 CAAGGAGCTAGCCAAAGTGCTTGTTTTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGT 540
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 ------ATCTTCTGGTCCTCAAATTTTTGCAACACTCAAGGCCATTGAAAGTGTCATGAT 54
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 CACACTTCCTGCTGTCCTTCGAGTTATGAATGCTGTTATACCA--GAATGTGACGAGGAA 598
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 TTCCGCCCCAGATGCATTAATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTC 114
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 CATGGAAAGATCATCGTTGATATGTACAATGCAGCA----CTTAGAATTGGCAATGCCAT 654
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 AATGGTGCCATCCTCTCAGAGATTCAACATCTTACAGGCTCTTATAAAGAACAGCATCTT 174
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 TCAAGAAATGTGCAAAAAAATGGTAAACCAGACGAATGAAGAACTCTGTTCTGTACTTAG 714
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 CCCTTCATTGACTGCACTTCTCCTAGATCTGGTGAAGGATGAAGTTTCGAGAGAGATTCG 234
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 TCTATACTCCCTTCAGAACATAGCTCTTGTATCAAGATGCAAACAACAGCATATTCTCTC 774
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 TCGAGCTGATCAGGATATTGTTGAA-TCGGATCAATTACAAGATGGTGGCGAATGGCCAC 293
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 TGC-TTGTGGTTCAGTTGTTCTTCAGCATTCAAAA---ATTCTGACATTTTGTGGGTTCA 830
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 CACCTTGGTTTTCTCATGCACTTGAGTTGGTGGAGCTGATCTTGAAGCCTCCAGAAGGTG 353
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 CTTATTTGGGTCTTTTGACTGGTAATGATGTCACCTCAGCCACCGATAAGATTTCAAAAG 890
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 GCCCTCCTTGTCTTCCTGATCATGGTGAACAGGTACCCTCTTTTTATGTCACTACTCATG 413
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 ATGAAGATGCGGATTTGCTCGAGTGCTTTTCTTTTGCAATGAATGGTGCAAATCTTGCAG 950
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 AGGAGCATAAATATCTGTTGGAAGAACT--------CAGGCAACAGCAACATAGATGGAA 465
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 TTATCTGGACCTATATGGATGATGAAATCTCAAAATATGCTGGCGCTGAGCTGGAATCAG 1010
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 TAGCATTAGTTGATACAAGATGCCTGTTTCCGTATTAAAATAAAAGGAGGATGACTGTTG 525
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 CGCTGAAAGATGTTAAGGGCAACCATACGAGGATGTGGCAAGCAATTAACATTCTTAGAT 1070
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 GGCAGGAATAGATCTAGATAAGACAGACATGAACTTGGAGACTTGTCTAAATCCACAGAA 585
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 ATGTGTTGTCTTCAACTCATTACCCATGGGTAATAAAATCCCACAGTTTGGACTTACTGC 1130
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 GGACGTCAAGGACTAGGAGAGTTCTGTTCATCTTTACCTTATTAAATCTCAGTGAACC-- 643
consensus_13345#2 ------------------------------------------------------------
consensus_13345#0 TGACTATAGCTAATGAAAGTCGTATTGAGGAAATCAATGATCATGTAGATGTTTCATCTT 1190
consensus_13345#3 ------------------------------------------------------------
consensus_13345#1 -AGCTGTGTCATCTTAGGCTCTTGAGAAATTAGCGAATGATTATA-ACAAATGGCTTCAA 701
consensus_13345#2 -----------------------------------------CATTTACAAGAC---TGAA 16
consensus_13345#0 CTGGTCCTCAAATTTTTGCAACA-CTCAAGGCCATTGAAAGTG-TCATGATTTCCGCCCC 1248
consensus_13345#3 -------------------AACA-CTCAAGGCCATTGAAAGTG-TCATGATTTCCGCCCC 39
consensus_13345#1 TACTTATAAAGATACTCTTAACAACTGAATAAAATATAGAATAATTANAGTCTCAACTCC 761
consensus_13345#2 CTATCATCAAAATCTGAAATTCAACTCGGAACTTTGAAATGTGACACTATTCTTTACCCT 76
** ** * * * * * * *
consensus_13345#0 AG----ATGCATT-AATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTCAATG 1303
consensus_13345#3 AG----ATGCATT-AATGCGGAAGAAAGCTTTTGCTACTTTGAAACAGGTTATTTCAATG 94
consensus_13345#1 AATCCAAAACATTGAATATCGATCTATCATTTTTCCTTTTT----CTTTTCGACTTAATT 817
consensus_13345#2 TT-CAAATAGATCTGGATAAGTTTTATAGTTTTTTAAATATGAA--CTGATGTTCCATTG 133
* ** * * **** * * * *
consensus_13345#0 GTGCCATCCTCTCAGAGATTCCACATCTTACAG-GCTCTTATAAAGAACAGCATCTTCCC 1362
consensus_13345#3 GTGCCATCCTCTCAGAGATTCAACATCTTACAG-GCTCTTATAAAGAACAGCATCTTCCC 153
consensus_13345#1 -TGTCAGACTCTC-GTAATCTCAT-TTTTGTAA-CTTTTAACATTGAATGAATTTATACT 873
consensus_13345#2 TTTATTTGTTGCATCCAGTCCAAACTTGCACAATGCCAGGGCACTGGAATGTCCATTCAT 193
* * * * * * * * * *
consensus_13345#0 --TTCATTG-ACT---GCAATTCTCCTAG-ATCTGGTGAAGG-ATGAAGTTTCGAGAGAG 1414
consensus_13345#3 --TTCATTG-ACT---GCAATTCTCCTAG-ATCTGGTGAAGG-ATGAAGTTTCGAGAGAG 205
consensus_13345#1 AGTAAATTG-AGATGAGAAATGCATGTAA-ATTTTGTGGGAATATTTCATGTTAAATTTG 931
consensus_13345#2 AATTGAGCATATTTTCATTTTGCATTCAATATTTCCAGACGACAATATATCTCTACCTCC 253
* * * * * * ** * * * * * *
consensus_13345#0 ATTCGTCGAGCTGA---TCAGGATATTGTTGA-ATC-GGATCAA--TTACAAGATGGTGG 1467
consensus_13345#3 ATTCGTCGAGCTGA---TCAGGATATTGTTGA-ATC-GGATCAA--TTACAAGATGGTGG 258
consensus_13345#1 ATGTATAAATCAAA---GCTGGATTGCGTGAATATCTGGATTCACCTTATATGTTGCCCA 988
consensus_13345#2 TTCCCTCGCTTCTGCTCTCTGGGTTCCTATGGTATATTGCTCACCTTTTTGTCATGACAT 313
* * * ** * ** * * ** **
consensus_13345#0 CGAATGGCCACCACCTTGGTTTTCTCATGCACT--TGAGTTGGTGGAGCTG--------- 1516
consensus_13345#3 CGAATGGCCACCACCTTGGTTTTCTCATGCACT--TGAGTTGGTGGAGCTG--------- 307
consensus_13345#1 CTTGTGTTGTGCTTCGTTATTCTTATGTGTCCTGCTAAAGTGGTAATTTTGTTTTACATC 1048
consensus_13345#2 TATGTTGCTTTAATACAGGCAGT-AGATGCACCATTGGCATCAAATGGCTCAGTG----T 368
* * ** * * * *
consensus_13345#0 ATCTTGAAGCCT----CCAGAAGGTGGCCCTCCTTGT----CTTCCTGATCATGGTGAAC 1568
consensus_13345#3 ATCTTGAAGCCT----CCAGAAGGTGGCCCTCCTTGT----CTTCCTGATCATGGTGAAC 359
consensus_13345#1 ATTTTATGGCTTATGCCTAGAAAATAATCTGCCATGGTTCACTTTTTTTTATTTGTATGC 1108
consensus_13345#2 ACTTTGTTCTTCTATTCAAGGAGCTAGCCAAAGGTAT---------ATGTTTTTATATGA 419
* ** * ** * * * * * * *
consensus_13345#0 AGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAA 1628
consensus_13345#3 AGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAA 419
consensus_13345#1 AGGTATTATCAGCTTTGAATTTGCTGCGATTTGTTCTGATAATAGATTCAAGAGGATCAA 1168
consensus_13345#2 AGATTTCCACAGCCATCTCTCTGCT-CATCGTTTGGAAATTTTGGTTTCTAATGGATGAA 478
** * * **** * * **** * * * ** * * *** * **** **
consensus_13345#0 GATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGC 1688
consensus_13345#3 GATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGC 479
consensus_13345#1 GATCAAGAAAAATGTTTGGGGAAGAGACTATGAGGAAGGTGTACTCAGAGTGGCTGATGC 1228
consensus_13345#2 TTTCCAGATAGG-AATTGAGATACTTAATGCTCTATGCCTATATATATATAAGTTTAGAT 537
** *** * *** * * * * * ** * * * * *
consensus_13345#0 -CATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTT 1747
consensus_13345#3 -CATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTT 538
consensus_13345#1 -CATTAAGACCAATTGTTGCAGGAATTCAATCAGAAAGTGAAGAGGATGGTAGCGACGTT 1287
consensus_13345#2 ATATTCGCTTGACATATGTTACACACCTTGTGTGAATATTAACTGGTTAACATTTGTATT 597
*** * * * * * * *** * ** ** * * **
consensus_13345#0 GCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAG 1807
consensus_13345#3 GCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAG 598
consensus_13345#1 GCAAATCATATCATGTGCTCGTTAAATCCTGTTCAATTAGTATTGTACCGCTGCATTGAG 1347
consensus_13345#2 ATTAAATATGTTTTTTTTCTATTCTTCCTAGCTAATTGTGCTTTGGGCTAGTGC-TTGTT 656
** ** * * * ** * * * * * * *** * *** ***
consensus_13345#0 CTGGCAGAGGAAAAA-ATGAAAGGTTTCTAACGTTTTCAGTTC--ACTGGTTTTTGTACA 1864
consensus_13345#3 CTGGCAGAGGAAAAG-ATGAAAGGTTTCTAACGTTTTCAGTTC--ACTGGTTTTTGTACA 655
consensus_13345#1 CTGGCAGAGGAAAAG-ATGAAAGGTTTCTAACGTTTTCAGTTC--ACTGGTTTTTGTACA 1404
consensus_13345#2 TTGATTCAGAGGAGGCATACTGAGCAAGTAAAAGTCACACTTCCTGCTGTCCTTCGAGTT 716
** ** * ** * *** * ** *** *** ** *
consensus_13345#0 AT--ATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTT 1922
consensus_13345#3 AT--ATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTT 713
consensus_13345#1 AT--ATACTGCTGTCTCGAGGCAAAACATGAACAAGTTGTGAATATTATCCCAATGATTT 1462
consensus_13345#2 ATGAATGCTGTTATACCAGAATGTGAC--GAGGAACATGGAAAGATCATCGTTGATATGT 774
** ** *** * * * ** ** ** ** ** ** *** ** *
consensus_13345#0 GAAGTTGCGTTTTTTTTGTTGTACAGTGAAACTGTCGTCCTTCATAAAAAA--------- 1973
consensus_13345#3 GAAGTTCAGGAATGTTC------------------------------------------- 730
consensus_13345#1 GAAGTTG----------------------------------------------------- 1469
consensus_13345#2 ACAATGCAGCACTTAGAATTGGCAATGCCCATTCAGAAATGTGCAAAAAAAATGGTTTGT 834
* *
consensus_13345#0 -------------
consensus_13345#3 -------------
consensus_13345#1 -------------
consensus_13345#2 TGAGTTAAATGCC 847
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||