These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13354#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 610 fasta sequence [TTCCTCTTCGCTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA-CCCTATCCTAAGCGGCGAGT-GAGCTG-TGTTAC-AATTTGAAGT-CTGCTC-ATGCTGTATCACTATTT-AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAGCTCTAGAGAACAAAAGTTCTTAAAAAAAAAAAAA] [+] EMBL CF314739 [TTCCTCTTCGCTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAAT ] [+] EMBL AK120899 [ GTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGC ] [+] EMBL CF197306 [ CACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACAATAATCGGATCAATGACCTTGTNNANTCAA ] [+] EMBL CB682598 [ GCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTT ] [+] EMBL AU091798 [ GACGACGAGACCCAGCGAGCNATCCCNAGGGAAGAAAGAGATCGANAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTNATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCA NTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGTAAAGCTGTTGTTAC AATTTGAAGTCCTGCTCAATGCTGTATCACTATTTAAGTTGAGGATTTCTA ] [+] EMBL OS1180A [ GCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGNCTCCCTCTTCTCGNTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATNTTGCGCA NTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT NAGCTG TGTTACAAATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTNTGG ACGACTNAAATAAAGAATNGTTGTCAGATT ] [+] EMBL CA763686 [ gacgagacaAGGGGAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAA CCCTATCCTAAGCGGCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGGTCAATGACTTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAGCTCTAGAGAACAAAAGTTCTTAAAAAAAAAAAAA] [+] EMBL C97315 [ tgCCCTGGTTATTACAGCAACGNTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGTTGAAGCCACTGNTCAACCCCTATCNTAAGCGNCGAGT GAGCTG TGTTAC AATTTGAAGT CTGCTC ATGCTGTATCACTATTT AGTTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACNNTAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAGCTCTAGAGAGCAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13354#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 587 fasta sequence [GGAGTAGAAACTTCTTTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGGCGAGTGAGCTGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGTTGAGGATTTTTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTTTAGACACTAAAGGATGCCCCCTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF299832 [GGAGTAGAAACTTCTTTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCCAGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGAGCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGGCGAGTGAGCTGTGTTACAATTTGAAGTCTGCTCATGC ] [+] EMBL AA751440 [ CGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGGCGAGTGAGCTGTG ] [-] EMBL CF299831 [ GCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATCGTTTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCTTAAGCGGCGAGTGAGCTGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGTTGAGGATTTTTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTTTAGACACTAAAGGATGCCCCCTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13354#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [AGAGGACGAGACAAGGGGTTCTGGGTGACCACGCTCATCCTCCTCCTGGCCGGGTTGGTCGCCTCCCTCTTCTCGCTGCTTTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATTGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGGCGAGTGAGCTGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGGTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAAAAAAAAAAAAAAAA] [-] EMBL CA763685 [AGAGGACGAGACAAGGGGTTCTGGGTGACCACGCTCATCCTCCTCCTGGCCGGGTTGGTCGCCTCCCTCTTCTCGCTGCTTTGCTGCAACCGCGGGCCGTCGACCAACCTATTCCATTTGACCTTGGTTATTACAGCAACGGTTTGCTGTTGGATGATGTGGGCAATTGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGGCGAGTGAGCTGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGGTGAGGATTTCTATTCATTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACTAGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAATGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAAAAAAAAAAAAAAAA] consensusID : consensus_13354#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [GGGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTGTACGCTCTTCCCCCCCGCTGATTCTCTTCAGATAGCTGCTGATCTGGTGTGGTGTGATTGTGATCGCCTGTATGCCGCCTGGAGCTTTCGGATCGGGGCGGGCGCTATTCGGGCGGATTTGACCCGCCGGATGGTGGTTTTGATCTAGATTTGGGCGTATTGTGTAGGGCTAAGGATTTCCTCTATTGGTAGATTTCTCGTTGAGATTGCGTCGTCTTTTCGATCGGATAACGGTTGAAACGGTTGGATCGATGGGGGTAGCGGCTGATCTTAGCCCATGTTCAGTAAAAGAAGTGACTTCGTGCGAAAACCCCCAAATTTGTTCAATCTTTACCCTATGTTCCTCTCTTAAGATGAAAT] [+] EMBL CF303367 [GGGCTCATCTTCCTCCTCGCCGGCTTCGTCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTGTACGCTCTTCCCCCCCGCTGATTCTCTTCAGATAGCTGCTGATCTGGTGTGGTGTGATTGTGATCGCCTGTATGCCGCCTGGAGCTTTCGGATCGGGGCGGGCGCTATTCGGGCGGATTTGACCCGCCGGATGGTGGTTTTGATCTAGATTTGGGCGTATTGTGTAGGGCTAAGGATTTCCTCTATTGGTAGATTTCTCGTTGAGATTGCGTCGTCTTTTCGATCGGATAACGGTTGAAACGGTTGGATCGATGGGGGTAGCGGCTGATCTTAGCCCATGTTCAGTAAAAGAAGTGACTTCGTGCGAAAACCCCCAAATTTGTTCAATCTTTACCCTATGTTCCTCTCTTAAGATGAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13354#1 GGAGTAGAAACTTCTTTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCC 60 consensus_13354#2 ------------------------------------------------------------ consensus_13354#0 -----TTCCTCTTCGCTCCGTCTCTCCCCACCCCACCTCCGCCCCGAGACGACGAGACCC 55 consensus_13354#3 ------------------------------------------------------------ consensus_13354#1 AGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGA 120 consensus_13354#2 ---------------------------------------------------------AGA 3 consensus_13354#0 AGCGAGCGATCCCGAGGGAAGAAAGAGATCGAGAGGGAAGGGAAGGGAGAGGATCGGAGA 115 consensus_13354#3 ------------------------------------------------------------ consensus_13354#1 GCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCG 180 consensus_13354#2 GG-----ACGAGACAAGGGGTTCTGGGTGACCACGCTCATCCTCCTCCTGGCCGGGTTGG 58 consensus_13354#0 GCTTTCCGCCGGCCATGGGGTTCTGGGTGACCACGCTCATCTTCCTCCTCGCCGGCTTCG 175 consensus_13354#3 --------------------------------GGGCTCATCTTCCTCCTCGCCGGCTTCG 28 ******* ******* ***** ** * consensus_13354#1 TCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTC--CA 238 consensus_13354#2 TCGCCTCCCTCTTCTCGCTGCTTTGCTGCAACCGCGGGCCGTCGACCAACCTATTC--CA 116 consensus_13354#0 TCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTATTC--CA 233 consensus_13354#3 TCGCCTCCCTCTTCTCGCTGCTCTGCTGCAACCGCGGGCCGTCGACCAACCTGTACGCTC 88 ********************** ***************************** * * consensus_13354#1 TTTGACCTTGGTTATT--------ACAGCAAC-GGTTTGCTGTTGGATGAT-GTGGGCAA 288 consensus_13354#2 TTTGACCTTGGTTATT--------ACAGCAAC-GGTTTGCTGTTGGATGAT-GTGGGCAA 166 consensus_13354#0 TTTGACCTTGGTTATT--------ACAGCAAC-GGTTTGCTGTTGGATGAT-GTGGGCAA 283 consensus_13354#3 TTCCCCCCCGCTGATTCTCTTCAGATAGCTGCTGATCTGGTGTGGTGTGATTGTGATCGC 148 ** ** * * *** * *** * * * ** *** * **** *** * consensus_13354#1 TCGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGG--CGAGTGAGC 346 consensus_13354#2 TTGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGG--CGAGTGAGC 224 consensus_13354#0 TCGTCTATCTTGCGCAGCTGAAGCCACTGATCAACCCTATCCTAAGCGG--CGAGTGAGC 341 consensus_13354#3 CTGTATGCCGCCTGGAGCTTTCGGATCGGGGCGGGCGCTATTCGGGCGGATTTGACCCGC 208 ** * * * **** * * * * * **** ** consensus_13354#1 TGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGTTGAGGATTTTTATTCA 406 consensus_13354#2 TGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGGTGAGGATTTCTATTCA 284 consensus_13354#0 TGTGTTACAATTTGAAGTCTGCTCATGCTGTATCACTATTTAGTTGAGGATTTCTATTCA 401 consensus_13354#3 CGGATGGTGGTTTTGATCTAGATTTGGGCGTATTG-TGTAGGGCTAAGGATTTCCTCT-- 265 * * *** * * * * **** * * * * ******* * consensus_13354#1 TTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTTTAGACACT 466 consensus_13354#2 TTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACT 344 consensus_13354#0 TTTTGGCACGACTGAAATAAAGAATTGTTGTGAGATTTTGGAACACTTCCTCTAGACACT 461 consensus_13354#3 -ATTGGTAGATTTCTCGTTGAGA-TTGCGTCGTCTTTTCGATCGGATAACGGTTGAAACG 323 **** * * * *** *** * *** * * * * ** ** consensus_13354#1 AAAGGATGCCCCCTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAA 526 consensus_13354#2 AGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACCCAATAATCGGATCAA 404 consensus_13354#0 AGAGGATGCCCACTGTGATTAGTGTATGCAATTATATTATATACACAATAATCGGATCAA 521 consensus_13354#3 GTTGGAT---CGATGGGGGTAGCGGCTG--ATCTTAGCCCATGTTCAGTAAAAGAA---G 375 **** * ** * *** * ** ** ** ** ** *** * * consensus_13354#1 TGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAAAAA--------AAAAAAA 578 consensus_13354#2 TGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAAAAAAA 464 consensus_13354#0 TGACCTTGTCCATTCAAACTTCCAAAGTTTACCCAAGATAAATTTCTGCTTCCAGCTCTA 581 consensus_13354#3 TGACTTCGTGCG---AAAACCCCCAAATTTGTTCAATCTTTACCCTATGTTCCTCTCTTA 432 **** * ** * *** ** ** *** *** * * * consensus_13354#1 AAAAAAAAA-------------------- 587 consensus_13354#2 AAAAAAAAA-------------------- 473 consensus_13354#0 GAGAACAAAAGTTCTTAAAAAAAAAAAAA 610 consensus_13354#3 AGATGAAAT-------------------- 441 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||