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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1603 fasta sequence
[GAACCCGACCTCCCATCTCTTCCTCCTCCTCTCCTCGATTCCTCTCCCTCCCAATCCACCTCCTCCTCCTCGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA-AAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATT-CTGATGCTCAGCCTAATGATGCG-CCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAAT-TGT-CGAGACCAAACTGTCTCTTACCTCTATT-CCAGTTGCTTGCAGCTCCATTGATAAAAAAAAAAAAAAAAAAGGGAA]
[+] EMBL AK111901 [GAACCCGACCTCCCATCTCTTCCTCCTCCTCTCCTCGATTCCTCTCCCTCCCAATCCACCTCCTCCTCCTCGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA AAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATT CTGATGCTCAGCCTAATGATGCG CCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAAT TGT CGAGACCAAACTGTCTCTTACCTCTATT CCAGTTGCTTGCAGCTCCA ]
[+] EMBL AK112009 [ TCTCCCTCCCAATCCACCTCCTCCTCCTCGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTACCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA AAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATT CTGATGCTCAGCCTAATGATGCG CCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAAT TGT CGAGACCAAACTGTCTCTTACCTCTATT CCAGTTGC ]
[+] EMBL CB679401 [ TCTCCCTCCCAATCCACCTCCTCCTCCTCGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTC ]
[+] EMBL CB678016 [ CGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAAATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCATAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCACCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAAGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCACGTGCTTCAGAAATTAACGGGAACAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGA ]
[+] EMBL BP184879 [ acgaggGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAG ]
[+] EMBL CB666775 [ ACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCCCTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGATGTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA AAACTCCTCTCTTANGGCTGAGCTTGA ]
[+] EMBL BP184665 [ TGCATCCATTTAATCACTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGAAATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTA ]
[-] EMBL CB661318 [ TGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA AAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATT CTGATGCTCAGCCTAATGATGCG CCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAATGTGT CGAGACCAAACTGTCTCTTACCTC ]
[-] EMBL CB666776 [ GGGATTACCTCCCACAGTGAGAGTGGAAGTGAGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATGATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGA AAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATT CTGATGCTCAGCCTAATGATGCG CCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAAT TGTCCTATA AGGACTGTCTCTTACCTCTATT CC ]
[-] EMBL CB679402 [ TCTGAATGGCATATCACATACAGCATTAAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGGGGAGTTGCTCCCTCACCAAACTTGAACATAGGAATGGACTCCTGGGGGGCTGCTGGTTCTTCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTTTGGTTCAGTTAGAGGAGAGCAATGGGAGGAAAGAGAGCTCACGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGGGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGGCAATTTAAGGGCAGA AAACTCCTTTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTTTTTTCACACAATGCTTCACTCAAGGAAAAAATAGAGGGGAACAGTGATTCAATCCCTTATATGAATGAACAGAACGACACCAATGGCACCCCCCAGAAGCAACAGGATT TTGATGCTCAGCCTAATGATGCG CCTTCCGAGTTATCATCCCGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTATTAAGCATCTTTCTGTGCCAATTCGATCAGAATGTGCCATGGCAAAT TGT GGAGACCAACCTGTCTGTTACCTTTATTAAGGGTTGCTTGCAGCTCCATTGATAAAAAAAAAAAAAAAAAAGGGAA]
[-] EMBL BE040235 [ GGTG TGCTGGTT TTCGCCTGTTCCTGCAATGCATGGCAACTCATCGTTTGGTTCAGTTCGAGGAGAGCAATGGTATGAAAGAGAGCTCAAGAAGCAGAAAAGGAACCAGTCTAATCGGGAATCAGCACGTAGATCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGCCAATTTAAGGGCAGACTAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACCTGGCACTTCTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGACCAGTGATTCAATCCCTTATATGAATGAACAGACCGACACCAATGGCACCCACCAGAAGCAACAGGATTCCTGATGCTCAGCCTAATGATGCGCCCTCCACAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCCAATTCGATCAGAATCTGACATGGCAAAT TGT TGAGACCAAACTGTCTCTCACCTCTAT ]
consensusID : consensus_13355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 864 fasta sequence
[CGCGTAGGCGCGGTTTTACAACCAAGCGGGGCNCTAAATATGCCCCTTCCCACAGGGATAACGCGGAGAGGCAACCCCCCAAGTATTGGCCGCCCCCTAGTAAATTTTTTGTTTTTTTTCAAGCTATTGGCCTTTTAGCGGAGAAATCTTCCCTAAAAAGCGATAACCGTGTATGTGCTAAGATTCACTCAAGGGAAATTGGTAAGGAAATGGAGTTTCAGAAGGCAATCTCAACAGCCTTATCTCAACCATGTAAGGGTCCACTCACGGGGGTAGTATCGGGGAGTTGCTCCACACAACTTGACACATAGNANTGGACTCTGGGGGTGCTGCTGGTCTTCGCCTGTTCNTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGANAAGGAAGCAGTCTAATCGGGAATCAGCACGAGATTCCGGGTTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAACTCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAGGAAGTACGAGGCACTTCTNTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATTCTGATGCTCAGCNTAATGATGCGCCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCAAATTGATCAGAATCTGACATGGCAAATTGTCGAGACCAAACTGTCTC]
[-] EMBL AW155056 [CGCGTAGGCGCGGTTTTACAACCAAGCGGGGCNCTAAATATGCCCCTTCCCACAGGGATAACGCGGAGAGGCAACCCCCCAAGTATTGGCCGCCCCCTAGTAAATTTTTTGTTTTTTTTCAAGCTATTGGCCTTTTAGCGGAGAAATCTTCCCTAAAAAGCGATAACCGTGTATGTGCTAAGATTCACTCAAGGGAAATTGGTAAGGAAATGGAGTTTCAGAAGGCAATCTCAACAGCCTTATCTCAACCATGTAAGGGTCCACTCACGGGGGTAGTATCGGGGAGTTGCTCCACACAACTTGACACATAGNANTGGACTCTGGGGGTGCTGCTGGTCTTCGCCTGTTCNTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGGGATGAAAGAGAGCTCAAGAAGCAGANAAGGAAGCAGTCTAATCGGGAATCAGCACGAGATTCCGGGTTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGGGCAGAAAACTCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAGGAAGTACGAGGCACTTCTNTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTATATGAATGAACAGAACGACACCAATGGCACCCACCAGAAGCAACAGGATTCTGATGCTCAGCNTAATGATGCGCCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCATGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCAAATTGATCAGAATCTGACATGGCAAATTGTCGAGACCAAACTGTCTC]
consensusID : consensus_13355#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 772 fasta sequence
[CGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTTGGTGAATGGTGAGGGGTTGAATTGTGTGGCCTCGTCGTGCTCGATTGCTTTTGCATTGTGCTTTGCGTGGATTCTGATTTCTCCTCCAATTTAAGCTAGTTTGACATGTATCCGATATTGACGAGGGGTAGATAGAATTCGGTGAATTGTAGATTTGGTTTGGTGCATCATAATGCATTTGGTGTTTTTTCAAATTTAGTGGGAATTTAGATTAGTGTCCAGCTGAGGAAATACGGGATCGAGACAGTGAGATTTGTCATTGCAAAATCTATCATGTTTTTCCCCTTCTTTGCTGTTCATACCAGGATTGTTTATTTCACCCAGCAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCCCTCCTGTTGCTGCAAGTCCCCAGGCTCATCC]
[+] EMBL CB661317 [CGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGAGCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCTAGATTAAGGTTGGTGAATGGTGAGGGGTTGAATTGTGTGGCCTCGTCGTGCTCGATTGCTTTTGCATTGTGCTTTGCGTGGATTCTGATTTCTCCTCCAATTTAAGCTAGTTTGACATGTATCCGATATTGACGAGGGGTAGATAGAATTCGGTGAATTGTAGATTTGGTTTGGTGCATCATAATGCATTTGGTGTTTTTTCAAATTTAGTGGGAATTTAGATTAGTGTCCAGCTGAGGAAATACGGGATCGAGACAGTGAGATTTGTCATTGCAAAATCTATCATGTTTTTCCCCTTCTTTGCTGTTCATACCAGGATTGTTTATTTCACCCAGCAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTACAATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTACTAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGCCACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCCCTCCTGTTGCTGCAAGTCCCCAGGCTCATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13355#0 GAACCCGACCTCCCATCTCTTCCTCCTCCTCTCCTCGATTCCTCTCCCTCCCAATCCACC 60
consensus_13355#1 ------------------------------------------------------------
consensus_13355#2 ------------------------------------------------------------
consensus_13355#0 TCCTCCTCCTCGCCGCCGCTCGCCGCCGCAATCCGCTCGCCGGAGGCGGACTCGCCGGCG 120
consensus_13355#1 ------------------------------------------------------------
consensus_13355#2 ------------------------------------------------------------
consensus_13355#0 TCGGACGCTGCCTGCGCCGAGGGCGCTGCTGCATTTGTTTGCCTGTGGCTCGGGGGAAGA 180
consensus_13355#1 ------------------------------------------------------------
consensus_13355#2 ------------------------------------------------------------
consensus_13355#0 GCGAGCGGCCGTGTGGGCTTGCTCTGCTCGAGGGCCGCGTTCGCGTGGTTTCTCTCCTCG 240
consensus_13355#1 ------------------------------------------------------------
consensus_13355#2 ------------------------------------------------------------
consensus_13355#0 TGTGGGTTGCTAGATTAAGGTGGCCTTTTTGCTATCACAATTTATCAATATCCGGGTTAC 300
consensus_13355#1 ------------------------------------------------------------
consensus_13355#2 ------------------------------------------------------------
consensus_13355#0 AATGGAATGAGTGTGCGAGTTTGGTTGCCGGGAAGCATTGTTGACGAATCAGATGGGTAC 360
consensus_13355#1 ------------------------------------------------------------
consensus_13355#2 ------------------------------------------------------------
consensus_13355#0 TAATGATCCTGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCGGAGCAGTCTCCAGC 420
consensus_13355#1 ------------------------------------------------------------
consensus_13355#2 ------------------------------------------------------------
consensus_13355#0 CACTACATCTGGCACTACAGCTCCAGTTTACCCTGAATGGCCTGGTTTTCAGGCCTACTC 480
consensus_13355#1 ------------------------------------------------------------
consensus_13355#2 ------------------------------------------------------------
consensus_13355#0 GGCAATTCCACCGCATGGGTTCTTTCCACCTCCTGTTGCTGCAAGTCCCCAGGCTCATCC 540
consensus_13355#1 ------------------------------------------------------------
consensus_13355#2 ------------------------------------------------------------
consensus_13355#0 CTACATGTGGGGAGCTCAGCCCATGGTGCCACCTTACGGGACACCACCACCTTATATGAT 600
consensus_13355#1 ------------------------------------------------------------
consensus_13355#2 ------------------------------------------------------------
consensus_13355#0 GTATCCTCCAGGAACTGTATATGCACATCCCTCTACTCCTGGTGTGCATCCATTTAATCA 660
consensus_13355#1 --------------------------------------------------CGCGTAGGCG 10
consensus_13355#2 ------------------------------------------------------------
consensus_13355#0 CTACCCTATGCTGGCAAATGGAAATGTTGAAACTGCTGGAACTGCACCAGGTGCTTCAGA 720
consensus_13355#1 CGGTTTTA--CAACCAAGCGGGGCNCTAAATATGCCCCTTCCCACAGGGATAACGCGGAG 68
consensus_13355#2 ----------------CGCCGGAGGCGGACTCGCCGGCGTCGGACGCTGCCTGCGCCGAG 44
* * *
consensus_13355#0 AATTAACGGGAAAAATGAGCTTGGCAGAACATCTGGTCCATCTGCCAACGGGATTACCTC 780
consensus_13355#1 AGGCAACCCCCCAAGTA---TTGGCCGCCC-CCTAGTAAATTTTTTGTT----TTTTTTC 120
consensus_13355#2 -GGCGCTGCTGCATTTG--TTTGCCTGTGGCTCGGGGGAAGAGCGAGCG----GCCGTGT 97
* * *** * * * * *
consensus_13355#0 CCACAGTGAGAGTGGAAGTG-AGAGTGAAAGTGAAGGAAGTGATGCCAACTCTCAAAATG 839
consensus_13355#1 AAGCTATTGGCCTTTTAGCGGAGAAATCTTCCCTAAAAAGCGATAACCGTGTATGTGCTA 180
consensus_13355#2 GGGC--TTGCTCTGCTCGAG-GGCCGCGTTCGCGTGGTTTCTCTCCTCGTGTGGGTTGCT 154
* * * * * * *
consensus_13355#0 ATTCACATTCAAAGGAAAATGATGTAAAGGAAGATGGTAGTTCTCAGAATGGCATATCAC 899
consensus_13355#1 AGATTCACTCAAGGGAAATTGGT----AAGGAAATGG-AGTT-TCAGAAGGCAATCTCA- 233
consensus_13355#2 AGATTAAGGTTGGTGAA--TGGT----GAGGGGTTG--AATTGTGTGGCCTCGTCGTGCT 206
* * *** ** * * ** * ** * * *
consensus_13355#0 ATACAGCATT-AAATCAGAACATGTCGATGGCTCCAACTCAAACGGGTGTAGTAATCGGG 958
consensus_13355#1 --ACAGCCTT-ATCTCA-ACCATGT--AAGGGTCCA-CTCA--CGGGGGTAGTATC--GG 282
consensus_13355#2 CGATTGCTTTTGCATTGTGCTTTGC--GTGGATTCTGATTT--CTCCTCCAATTT----- 257
* ** ** * ** ** * * * * * *
consensus_13355#0 GGAGTTGCTCCCACAACAAACTTGAACATAGGAATGGACTACTGGGGTGCTGCTGGTTCT 1018
consensus_13355#1 GGAGTTGCTCC-ACA-CAACTTGACACATAGNANTGGACTCTGGGGGTGCTGCTGGT-CT 339
consensus_13355#2 -AAGCTAGTTTGACATGTATCCGATAT-TGACGAGGGGTAGATAGAATTCGGTGAATTGT 315
** * * *** * * * ** * * * * * *
consensus_13355#0 TCGCCTGTTCCTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGG 1078
consensus_13355#1 TCGCCTGTTCNTGCAATGCATGGCAAAGCATCGTCTGGTTCAGTTCGAGGAGAGCAATGG 399
consensus_13355#2 AGATTTGGTTT---GGTGCATCATAATGCATTTGGTGTTTT--TTCAA-------ATTTA 363
** * ***** ** **** ** ** *** * * *
consensus_13355#0 GATGAAAGAGAGCTCAAGAAGCAGAAAAGGAAGCAGTCTAATCGGGAATCAGCACGTAGA 1138
consensus_13355#1 GATGAAAGAGAGCTCAAGAAGCAGANAAGGAAGCAGTCTAATCGGGAATCAGCACGAGAT 459
consensus_13355#2 GTGGGAATTTAGATTAGTGTCCAGCTGAGGAAATA-CGGGATCGAGA--CAGT--GAGAT 418
* * ** ** * * *** ***** * **** ** *** *
consensus_13355#0 TCCCGGCTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGG 1198
consensus_13355#1 TCCGGGTTGCGCAAGCAGGCTGAGTGTGAAGAGCTTTCTGTACGCGCTGACAATTTAAGG 519
consensus_13355#2 TTGTCATTGCAAAATCTATC---ATGTTTTTCCCCTTCTTT----GCTGTTCATACCAGG 471
* *** ** * * *** * **** * **** ** ***
consensus_13355#0 GCAGAAAACTCCTCTCTTAGGGCTGAGCTTGAACGGATCAAAAAGGAGTACGAGGCACTT 1258
consensus_13355#1 GCAGAAAACTC-TCTCTTAGGGCTGAGCTTGAACGGATCAAAAGGAAGTACGAGGCACTT 578
consensus_13355#2 ATTGTTTATTTCACCCAGCAGG-TGGCCTTTTTGCTATCACAATTTATCAATATCCGGGT 530
* * * * * ** ** *** **** ** * * * * *
consensus_13355#0 CTTTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTAT 1318
consensus_13355#1 CTNTCACACAATGCTTCACTCAAGGAAAAACTAGAGGGGAACAGTGATTCAATACCTTAT 638
consensus_13355#2 -TACAATGGAATGAGTG--TGCGAGTTTGGTTGCCGGGAAGCATTG--TTGACGAATCAG 585
* * **** * * * * *** * ** ** * * * *
consensus_13355#0 ATGAATGAACAGAACGACACCAATGGCAC-CCACCAGAAGCAACAGGATTCTGATGCTCA 1377
consensus_13355#1 ATGAATGAACAGAACGACACCAATGGCAC-CCACCAGAAGCAACAGGATTCTGATGCTCA 697
consensus_13355#2 ATGGGTACT---AATGATCC---TGGCACGCCGTCCAAGGCAACAAAGGCATCAGAACCG 639
*** * ** ** * ****** ** * * ****** * * *
consensus_13355#0 GCCTAATGATGCGCCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCA 1437
consensus_13355#1 GCNTAATGATGCGCCTTGAGAGTTATCATCACGTGTAGTAGCATCTAATTGTTTAGCTCA 757
consensus_13355#2 GAGCAGTCTCCAGCCACTACATCTGGCACTAC----AGCTCCAGTTTACCCTGAATGGCC 695
* * * *** * * * ** ** ** ** * * * * *
consensus_13355#0 TGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCC 1497
consensus_13355#1 TGATTCTAGTAGGACATCACCATTTGTGTTAGATGAATTTACTAAGCATCTTTCTGTGCA 817
consensus_13355#2 TGGTTTTCAGGCCTACTCGGCAATTCCACCGCATGGGTTCTTTCCCCTCCTGTTGCTGCA 755
** ** * ** ** ** *** ** * * ** * ***
consensus_13355#0 AATTCGATCAGAATCTGACATGGCAAATTGTCGAGACCAAACTGTCTCTTACCTCTATTC 1557
consensus_13355#1 AATT-GATCAGAATCTGACATGGCAAATTGTCGAGACCAAACTGTCTC------------ 864
consensus_13355#2 AGTC--CCCAGGCTCATCC----------------------------------------- 772
* * *** ** *
consensus_13355#0 CAGTTGCTTGCAGCTCCATTGATAAAAAAAAAAAAAAAAAAGGGAA 1603
consensus_13355#1 ----------------------------------------------
consensus_13355#2 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||