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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1695 fasta sequence
[ACCATCGCCATTGCCACCACCTCTCCTATATCTCNCCCNCCCCCTCCTCCCTCCCACGCCATTCGCCTCCTTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAAAATTTGGCACCACACATTCTACAATGAGCTTCGTGTAGCACCAGAAGAGCATCCAATTCTTCTTACGGAGGCTCCACTTAACCCTAAGGCCAACAGGGAGAAGATGACACAAATTATGTTTGAGACATTCAGCGTTCCAGCCATGTATGTCGCTATTCAAGCCGTGCTTTCCCTCTATGCTAGTGGACGTACTACTGGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCCATTCTCCGTCTTGATCTTGCTGGTAGGGGTCTGACTGATTCCCTCATGAAGATCCTGACTGAGAGGGGTTACTCATTCACCACCTCTGCCGAGCGGGAAATTGTCCGTGACATCAAGGAAAAGCTTGCATACGTCGCTCTTGACTACGAGCAGGAGCTTGAGACTGCAAAGAGCAGCTCATCAGTTGAGAAGAGCTATGAGCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGCGCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTCATCGGCATGGAAGCTCCAGGCATCCACGAGACGACATACAACTCCATCATGAA-G-TG-CGATG-TTGATATCAGAAA--GGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCGCGGACCGCATGAGCAAGGAGATCACCGCGCTCGC-GCCAAGCAGCA-TGAAGA-TCAAGGTT-GTCGCT-CCGCCAGAG-AGGAAGTA-CAGTGTCTGGATTGGAGGATC-AATCCTTGCATC-TCTGA-GCACCTT-CCAG-CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAG-TTTGATTTCAT-AAATTGATTTGAGATTCTTGAACTTTTCTAGTAAAAAAAAAGCTAGTCTGCAACCTTGCAATGTTCATCCTCTTTGTCATGAGCTTGTACTACTTGAAGATACTATGCCCCTGTTTGGGGAGGTCGAGATTTTAAGAAGTAGCTAGCTAGTGAAAATATGAAAATGCTAGGATTCCCAAATTGTAGCTTTTTGTTCATTTTCAGGGTTATATAATTACATATTCTCA]
[+] EMBL OS0982A [ACCATCGCCATTGCCACCACCTCTCCTATATCTCNCCCNCCCCCTCCTCCCTCCCACGCCATTCGCCTCCTTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACC ]
[+] EMBL OSS14331A [ TTGCCACCACCTCTCCTATATCTCGCCCTCCCCCTCCTCCCTCCCACGCCATTCGCCTCCTTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATA CCCATTGAGCATGGAATTGTAAGCAACTng ]
[+] EMBL AK070531 [ CCTTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAAAATTTGGCACCACACATTCTACAATGAGCTTCGTGTAGCACCAGAAGAGCATCCAATTCTTCTTACGGAGGCTCCACTTAACCCTAAGGCCAACAGGGAGAAGATGACACAAATTATGTTTGAGACATTCAGCGTTCCAGCCATGTATGTCGCTATTCAAGCCGTGCTTTCCCTCTATGCTAGTGGACGTACTACTGGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCCATTCTCCGTCTTGATCTTGCTGGTAGGGGTCTGACTGATTCCCTCATGAAGATCCTGACTGAGAGGGGTTACTCATTCACCACCTCTGCCGAGCGGGAAATTGTCCGTGACATCAAGGAAAAGCTTGCATACGTCGCTCTTGACTACGAGCAGGAGCTTGAGACTGCAAAGAGCAGCTCATCAGTTGAGAAGAGCTATGAGCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGCGCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTCATCGGCATGGAAGCTCCAGGCATCCACGAGACGACATACAACTCCATCATGAA G TG CGATG TTGATATCAGAAA GGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCGCGGACCGCATGAGCAAGGAGATCACCGCGCTCGC GCCAAGCAGCA TGAAGA TCAAGGTT GTCGCT CCGCCAGAG AGGAAGTA CAGTGTCTGGATTGGAGGATC AATCCTTGCATC TCTGA GCACCTT CCAG CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAG TTTGATTTCAT AAATTGATTT ]
[+] EMBL AK101613 [ TTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAA CGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAAAATTTGGCACCACACATTCTACAATGAGCTTCGTGTAGCACCAGAAGAGCATCCAATTCTTCTTACGGAGGCTCCACTTAACCCTAAGGCCAACAGGGAGAAGATGACACAAATTATGTTTGAGACATTCAGCGTTCCAGCCATGTATGTCGCTATTCAAGCCGTGCTTTCCCTCTATGCTAGTGGACGTACTACTGGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCCATTCTCCGTCTTGATCTTGCTGGTAGGGATCTGACTGATTCCCTCATGAAGATCCTGACTGAGAGGGGTTACTCATTCACCACCTCTGCCGAGCGGGAAATTGTCCGTGACATCAAGGAAAAGCTTGCATACGTCGCTCTTGACTACGAGCAGGAGCTTGAGACTGCAAAGAGCAGCTCATCAGTTGAGAAGAGCTATGAGCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGCGCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTCATCGGCATGGAAGCTCCAGGCATCCACGAGACGACATACAACTCCATCATGAA G TG CGATG TTGATATCAGAAA GGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCGCGGACCGCATGAGCAAGGAGATCACCGCGCTCGC GCCAAGCAGCA TGAAGA TCAAGGTT GTCGCT CCGCCAGAG AGGAAGTA CAGTGTCTGGATTGGAGGATC AATCCTTGCATC TCTGA GCACCTT CCAG CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAG TTTGATTTCAT AAATTGATTTGAGATTCTTGAACTTTTCTAGTACCGCAACTGCTAGTCTGCAACCTTGCAATGTTCATCCTCTTTGTCATGAGCTTGTACTACTTGAAGATACTATGCCCCTGTTTGGGGAGGTCGAGATTTTAAGAAGTAGCTAGCTAGTGAAAATATGAAAATGCTAGGATTCCCAAATTGTAGCTTTTTGTTCATTTTCAGGGTTATATAATTACATATTCTCA]
[+] EMBL CF303253 [ CCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAAAATTTGGCACCACACATTCTACAATGAGCTTCGTGTAGCACCAGAAGAGCATCCAATTCTTCTTACGGAGGCTCCACTTAACCCTAAGGCCAACAGGGAGAAGATGACACAAATTATGTTTGAGACATTCAGCGTTCCAGCCATGTATGTCGCTATTCAAGCCGTGCTTTCCCTCTATGCTAGTGGACGTACTACTGGTATTGTCTTGGATTCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCCATTCTCCGTCTTGA ]
[+] EMBL BI805870 [ ACTCCATCATGAAGG TGCCGATG TTGATATCAG AA GGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCGCGGACCGCATGAGCAAGGAGATCACCGCGCTCGC GCCAAGCAGCA TGAAGA TCAAGGTT GTCGCT CCGCCAGAG AGGAAGTA CAGTGTCTGGATTGGAGGATC AATCCTTGCATC TCTGA GCACCTT CCAG CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAATNNTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGCTTTGATTTCATCAANCTGATTTGAGATTCTTGAACTTTTCTAGTAAAAAAAAAa ]
[+] EMBL BI807188 [ ATGAA GTTG CGATGTTTGATATCAGAAAAGGGACCTGTATGGTAACATTGTTCTCA TGGTGGATCCACCATGTT CCTGGCATC C GACCGCATGAGCAAGGAGATCACCGCGCTCGCAGCCAAGCAGCA TGAAGA TCAAGGTT GTCGCT CCGCCAGAG AGGAAGTA CAGTGTCTGGATTGGAGGATCNAATCCTTGCATC TCTGA GCACCTT CCAG CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACCAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCC ATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAG TTTGATTTCAT AAATTGATTTGAGATTCTTGAACTTTTCTA AAAAAA ]
[+] EMBL AU032810 [ gcC GCCAAGCAGCATTGAAGATTCAAGGTTCGTCGCTCCCGCCAGNGAAGGAAGTANCAGTGTCTGGATTGGAGGATC AATCCTTGCATCTTCTGAGGCACCTTCCCAGNCAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAG TTTGATTTCAT AAATTGATTTGAGATTCTTGAACTTTTCTAAAAAAAAAAAA ]
consensusID : consensus_13379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 846 fasta sequence
[TCTCGCCCTCCCCCTCCTCCCTCCCACGCCATTCGCCTCCTTCTTGCTGCAGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTCGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAAACCTGGCAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAACATACGGCACCACACCTACTACAATGATCTTCGTGTAGCACCATAGGAGCCTCCCATTCTCCTTACGGAGGCTCCACTTAACCCTAATGCCACCAGGGAGATGATCACCCATATCATGTCTGAAACATCCACCGTACCACCCATGTATGTTCGCTATTCCCACGCCCTTGCTGTCCCCCCTCTATTGCCTAGCTGGAACCGTCCCTACNTGGGGTAATTAGGTCCCTTGGGCAATCCCTCGGGACCAATGGGTTGGTCCACGTCCACAACATACTCCCCCAGATCCTAACCCAATATGGTTTCACTTGCCCCCTTTTACCCGTGCATGGCCCACATTTCCCTCACCGGTTCNATTGGAATTCCTTGGCGCCTGGGGCTACCGGGGAATTTCCTCGAACCNTTGAGATTCCCCCCCTNTCATTTTGAAAANCAAATCCCCCTGGACACCTTGACACACACCGTGGGGCTTATACTCTNCACTTTCT]
[+] EMBL CA753466 [TCTCGCCCTCCCCCTCCTCCCTCCCACGCCATTCGCCTCCTTCTTGCTGCAGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATTGTCGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAAACCTGGCAAATACCCCATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAACATACGGCACCACACCTACTACAATGATCTTCGTGTAGCACCATAGGAGCCTCCCATTCTCCTTACGGAGGCTCCACTTAACCCTAATGCCACCAGGGAGATGATCACCCATATCATGTCTGAAACATCCACCGTACCACCCATGTATGTTCGCTATTCCCACGCCCTTGCTGTCCCCCCTCTATTGCCTAGCTGGAACCGTCCCTACNTGGGGTAATTAGGTCCCTTGGGCAATCCCTCGGGACCAATGGGTTGGTCCACGTCCACAACATACTCCCCCAGATCCTAACCCAATATGGTTTCACTTGCCCCCTTTTACCCGTGCATGGCCCACATTTCCCTCACCGGTTCNATTGGAATTCCTTGGCGCCTGGGGCTACCGGGGAATTTCCTCGAACCNTTGAGATTCCCCCCCTNTCATTTTGAAAANCAAATCCCCCTGGACACCTTGACACACACCGTGGGGCTTATACTCTNCACTTTCT]
consensusID : consensus_13379#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 763 fasta sequence
[CAGGAGCTTGAGACTGCAAAGAGCAGCTCATCAGTTGAGAAGAGCTATGAGCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGCGCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTTATTGGCATGGAAGCTCCAGGCATCCATGAGACGACATACAACTCCATCATGAAGTGCGATGTTGATATCAGAAAGGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCACGGACCGCATGAGCAAGGAGATCACCGCGCTCGCGCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCGCCAGAGAGGAAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCATCTTTGAGCACCTTCCAGCAGATGTGGATTTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATTGTCCACCGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACGAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759209 [CAGGAGCTTGAGACTGCAAAGAGCAGCTCATCAGTTGAGAAGAGCTATGAGCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGCGCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTTATTGGCATGGAAGCTCCAGGCATCCATGAGACGACATACAACTCCATCATGAAGTGCGATGTTGATATCAGAAAGGACCTGTATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCACGGACCGCATGAGCAAGGAGATCACCGCGCTCGCGCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCGCCAGAGAGGAAGTACAGTGTCTGGATTGGAGGATCAATCCTTGCATCTTTGAGCACCTTCCAGCAGATGTGGATTTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATTGTCCACCGGAAGTGGTTCTAGATGTGGCCTAGCTGTGTCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGAC AAAAAAATTGTTGGGTTTGATGGCTTGTCTATGGGTGTATCTACTTTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACCTTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTCTTGAAAAAAAAAAAA ]
[+] EMBL AU173561 [ gnagnTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAAGTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACNCCTTGTCTATTAGCATTAGCTGGCTNTTTCGNGG NGANAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTCTTGAAAAAAAAAAAAAAAAA ]
[+] EMBL CF330446 [ GTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAGCTGGCTGTTTCATGGACAAAAAAAATTGTTGGGTCTGATGGCTTGTCTATGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGGTTTCATAAATTGATTTGAGATTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13379#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence
[AGGGACGAGACAAGGGGGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTCTTGAACTTTTCTAGTACCGCAAAAAAAAAAA]
[-] EMBL CA760928 [AGGGACGAGACAAGGGGGGGTGTATCTACTCTGATTAGCTCCGGTTTTTGTGTATGCCAATATAATTATTCCGTAAGTACGTGGGGAGTCAAGAACATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGATTCTTGAACTTTTCTAGTACCGCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 ACCATCGCCATTGCCACCACCTCTCCTATATCTCNCCCNCCCCCTCCTCCCTCCCACGCC 60
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 ATTCGCCTCCTTCTTGCTGCCGCCGCCATCCCCGGTTCGGTTCTCTCCTCTTCTTTAGAT 120
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 CAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTGACAATGGAACC 180
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 GGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTTTCCCGAGTATT 240
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 GTTGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAGATGCTTATGTC 300
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 GGTGATGAGGCCCAATCCAAGAGGGGTATCCTAACCTTGAAATACCCCATTGAGCATGGA 360
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 ATTGTAAGCAACTGGGATGACATGGAGAAAATTTGGCACCACACATTCTACAATGAGCTT 420
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 CGTGTAGCACCAGAAGAGCATCCAATTCTTCTTACGGAGGCTCCACTTAACCCTAAGGCC 480
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 AACAGGGAGAAGATGACACAAATTATGTTTGAGACATTCAGCGTTCCAGCCATGTATGTC 540
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 GCTATTCAAGCCGTGCTTTCCCTCTATGCTAGTGGACGTACTACTGGTATTGTCTTGGAT 600
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 TCTGGAGATGGTGTCAGTCACACAGTCCCAATCTACGAAGGTTATGCCCTTCCGCATGCC 660
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 ATTCTCCGTCTTGATCTTGCTGGTAGGGGTCTGACTGATTCCCTCATGAAGATCCTGACT 720
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 GAGAGGGGTTACTCATTCACCACCTCTGCCGAGCGGGAAATTGTCCGTGACATCAAGGAA 780
consensus_13379#1 -----------------------------------------TCTCGCCCTCCCCCTCCTC 19
consensus_13379#2 ------------------------------CAGGAGCTTGAGACTGCAAAGAGCAGCTCA 30
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 AAGCTTGCATACGTCGCTCTTGACTACGAGCAGGAGCTTGAGACTGCAAAGAGCAGCTCA 840
consensus_13379#1 CCTCCCACGCCATTCGCCTCCTTCTTGCTGCAGCCGCCATCCCCGGTTCGGTTCTCTCCT 79
consensus_13379#2 TCAGTTGAGAAGAGCTATGA--GCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGC 88
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 TCAGTTGAGAAGAGCTATGA--GCTGCCCGATGGACAGGTGATCACCATTGGCGCGGAGC 898
consensus_13379#1 CTTCTTTAGATCAGTTAAAATAAATGGCTGACGCAGAGGACATTCAGCCCCTTGTCTGTG 139
consensus_13379#2 GCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTTATTGGCATGGAAGCTCCAGGCA 148
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 GCTTCAGATGCCCAGAGGTCATGTTCCAGCCTTCTCTCATCGGCATGGAAGCTCCAGGCA 958
consensus_13379#1 ACAATGGAACCGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCTCCCCGTGCTGTTT 199
consensus_13379#2 TCCATGAGACGACATACAACTCCATCATGAAGTGCGATGTTGATATCAGAAAGGACCTGT 208
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 TCCACGAGACGACATACAACTCCATCATGAAGTGCGATGTTGATATCAGAAAGGACCTGT 1018
consensus_13379#1 TCCCGAGTATTGTCGGCCGTCCGCGACATACAGGCGTTATGGTTGGGATGGGACAAAAAG 259
consensus_13379#2 ATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCACGGACCGCATGA 268
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 ATGGTAACATTGTTCTCAGTGGTGGATCCACCATGTTCCCTGGCATCGCGGACCGCATGA 1078
consensus_13379#1 ATGCTTATGTCGGTGATGAGGCCCAATCCAAGAGGGGTATCCTAAACCTGGCAAATACCC 319
consensus_13379#2 GCAAGGAGATCACCGCGCTCGCGCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCGCCAG 328
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 GCAAGGAGATCACCGCGCTCGCGCCAAGCAGCATGAAGATCAAGGTTGTCGCTCCGCCAG 1138
consensus_13379#1 CATTGAGCATGGAATTGTAAGCAACTGGGATGACATGGAGAACATACGGCACCACACCTA 379
consensus_13379#2 AGAGGAAGTACAGTGTCTGG-ATTGGAGGATCAATCCTTGCATCTTTGAGCACCTTCCAG 387
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 AGAGGAAGTACAGTGTCTGG-ATTGGAGGATCAATCCTTGCATCTCTGAGCACCTTCCAG 1197
consensus_13379#1 CTACAATGATCTTCGTGTAGCACCATAGGAGCCTCCCATTCTCCTTACGGAGGCTCCACT 439
consensus_13379#2 CAGATGTGGATTTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATTGTCCACCGGAA- 446
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 CAGATGTGGATCTCAAGGGCTGAGTATGAAGAATCTGGCCCAGCTATCGTCCACAGGAA- 1256
consensus_13379#1 TAACCCTAATGCCACCAGGGAGATGATCACCCATATCATGTCTGAAACATCCACCGTACC 499
consensus_13379#2 GTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAG 506
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 GTGCTTCTAGATGTGGCCTAGCTGTATCTTTCATGAGAACCCCTTGTCTATTAGCATTAG 1316
consensus_13379#1 ACCCATGTATGTTCGCTATTCCCACGCCCTTGCTGTCCCCCCTCTATTGCCTAGCTGGAA 559
consensus_13379#2 CTGGCTGTTTCATGGACGAAAAAAATTGTTGGG-TCTGATGGCTTGTCTATGGGTGTATC 565
consensus_13379#3 ----------------------------------AGGGACGAGACAAGGGGGGGTGTATC 26
consensus_13379#0 CTGGCTGTTTCATGGAC-AAAAAAATTGTTGGG-TCTGATGGCTTGTCTATGGGTGTATC 1374
consensus_13379#1 CCGTCCCTACNTGGGGTAATTAGGTCCCTTGGGCAATCCCTCGGGACCAATGGGTTGGTC 619
**** **
consensus_13379#2 TACTCTGATTAGCTCCGGTTTTTG--TGTATGCCAATATAATTAT-------TCCGTAAG 616
consensus_13379#3 TACTCTGATTAGCTCCGGTTTTTG--TGTATGCCAATATAATTAT-------TCCGTAAG 77
consensus_13379#0 TACTCTGATTAGCTCCGGTTTTTG--TGTATGCCAATATAATTAT-------TCCGTAAG 1425
consensus_13379#1 CACGTCCACAACATACTCCCCCAGATCCTAACCCAATATGGTTTCACTTGCCCCCTTTTA 679
** * * * * * ** ******* ** ** *
consensus_13379#2 TACGTGGGGAGTCAAGAA---CATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGA 673
consensus_13379#3 TACGTGGGGAGTCAAGAA---CATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGA 134
consensus_13379#0 TACGTGGGGAGTCAAGAA---CATTATGTGTGTAGTTTGATTTCATAAATTGATTTGAGA 1482
consensus_13379#1 CCCGTGCATGGCCCACATTTCCCTCACCGGTTCNATTGGAATTCCTTGGCGCCTGGGGCT 739
**** * * * * * * * ** ** ** *** * * *
consensus_13379#2 TTCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 733
consensus_13379#3 TTCTTGAACTTTTCTAGTACCGCAAAAAAAAAAA-------------------------- 168
consensus_13379#0 TTCTTGAACTTTTCTAGTAAAAAAAAAGCTAGTCTGCAACCTTGCAATGTTCATCCTCTT 1542
consensus_13379#1 ACCGGGGAATTTCCTCGAACCNTTGAGATTCCCCCCCTNTCATTTTGAAAANCAAATCCC 799
* * * * *
consensus_13379#2 AAAAAAAAACAAAAAAAAAAAAAAAAAAAA------------------------------ 763
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 TGTCATGAGCTTGTACTACTTGAAGATACTATGCCCCTGTTTGGGGAGGTCGAGATTTTA 1602
consensus_13379#1 CCTGGACACCTTGACACACACCGTGGGGCTTATACTCTNCACTTTCT------------- 846
consensus_13379#2 ------------------------------------------------------------
consensus_13379#3 ------------------------------------------------------------
consensus_13379#0 AGAAGTAGCTAGCTAGTGAAAATATGAAAATGCTAGGATTCCCAAATTGTAGCTTTTTGT 1662
consensus_13379#1 ------------------------------------------------------------
consensus_13379#2 ---------------------------------
consensus_13379#3 ---------------------------------
consensus_13379#0 TCATTTTCAGGGTTATATAATTACATATTCTCA 1695
consensus_13379#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||