These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1944 fasta sequence [CAGCCTCCAAACCGCGCCCCCAAATTCCCCCTCTTCCGCCTCTCCGGCCGCCGCGTCGTACACAACCTCGCGCCGGTGAGCGGCGGCGCCGACGAAGCAGGACTCCCTCCGCCCAGCCCCATTCTCCCGCGTGGGGGGATCCATGGAGGGCGGCGGCGAGGTGGGCTGGTACGTGCTCGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAGAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGGGAGGAGTGAATGGATGCCATTGTCGTCGATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGGAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGGCAGAGGTGGAAGCCTCGACAGACAAGGCTGCAGATAACGACATAAACCAAGAACATGGGGCCGATGATCCTGATGACCGGCCAGCAACCCCACCAGATGGCGAGGACGAATTTACTGATGATGATGGTACTGTTTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAAGATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTTGCACATGAGGAAGAAGTTTTCCAAGCACCAGATATTGCTGGTTCAACCACATTAGAAGAAAACAATGTTTCTGCCGAAATTGAAATCAAAGAACCAACAAAGGTAGAAAAGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAGGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACATGTCTACGTTACTGGTTTGCCTGATGATGTCACAGCTGAGGAGATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGGACCCAGAGACAAGAAAACCCCGAGTAAAAATCTATACTGACAGAGAAACAGGCAGAAAGAAAGGTGATGCGCTAGTGACCTACCTCAAGGAGCCTTCTGTAGCACTAGCAATTCAACTGTTGGATGGGACATCATTTCGCCCTGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAGGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTCAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAGGTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGAAGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGTTTAATATTGCTCTGTAGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGTACGTGTACATTATATAGATT-AAACTTTTTTTTTCCTGATTAACATGTTCGTTTTGACATATTAACTTCTACTTCTAGGCTTGTAGCAACTTGCTATCCT-CCTTGGTATGCATAAATCCACACTGATGATATCAAAAAAAAAAAA] [+] EMBL AK111787 [CAGCCTCCAAACCGCGCCCCCAAATTCCCCCTCTTCCGCCTCTCCGGCCGCCGCGTCGTACACAACCTCGCGCCGGTGAGCGGCGGCGCCGACGAAGCAGGACTCCCTCCGCCCAGCCCCATTCTCCCGCGTGGGGGGATCCATGGAGGGCGGCGGCGAGGTGGGCTGGTACGTGCTCGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAGAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGGGAGGAGTGAATGGATGCCATTGTCGTCGATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGGAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGGCAGAGGTGGAAGCCTCGACAGACAAGGCTGCAGATAACGACATAAACCAAGAACATGGGGCCGATGATCCTGATGACCGGCCAGCAACCCCACCAGATGGCGAGGACGAATTTACTGATGGTGATGGTACTGTTTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAAGATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTTGCACATGAGGAAGAAGTTTTCCAAGCACCAGATATTGCTGGTTCAACCACATTAGAAGAAAACAATGTTTCTGCCGAAATTGAAATCAAAGAACCAACAAAGGTAGAAAAGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAGGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACATGTCTACGTTACTGGTTTGCCTGATGATGTCACAGCTGAGGAGATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGGACCCAGAGACAAGAAAACCCCGAGTAAAAATCTATACTGACAGAGAAACAGGCAGAAAGAAAGGTGATGCGCTAGTGACCTACCTCAAGGAGCCTTCTGTAGCACTAGCAATTCAACTGTTGGATGGGACATCATTTCGCCCTGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAGGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAGGTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGAAGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGTTTAATATTGCTCTGTAGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGTACGTGTACATTATATAGATT AAACTTTTTTTTTCCTGATTAACATGTTCGTTTTGACATATTAACTTCTACTTCTAGGCTTGTAGCAACTTGCTATCCT CCTTGGTATGCATAAATCCACAC ] [+] EMBL CB672535 [ AAACCGCGTCCCCAAATTCCCCCTCTTCCGCCTCTCCGGCCGCCGCGTCGTACACAACCTCGCGCCGGTGAGCGGCGGCGCCGACGAAGCAGGACTCCCTCCGCCCAGCCCCATTCTCCCGCGTGGGGGGATCCATGGAGGGCGGCGGCGAGGTGGGCTGGTACGTGCTCGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAGAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGGGAGGAGTGAATGGATGCCATTGTCGTCGATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGGAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGGCAGAGGTGGAAGCCTCGACAGACAAGGCTGCAGATAACGACATAAACCAAGAACATGGGGCCGATGATCCTGATGACCGGCCAGCAACCCCACCAGATGGCGAGGACGAATTTACTGATGATGATGGTACTGTTTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAAGATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTTGCACATGAGGAAGAAGTTTTCCAAGCACCAGATATTGCTGGTTCAACCACATTAGAAGAAAACAATGTCTCTGCCGAAATTGAAATCAAAGAACCCACAAAGGTAGAAAAGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAga ] [+] EMBL OSC104441 [ CTTCCGCCTCTCCGGCCGCCGCGTCGTACACAACCTCGCGCCGGTGAGCGGCGGCGCCGACGAAGCAGGACTCCCTCCGCCCAGCCCCATTCTCCCGCGTGGGGGGATCCATGGAGGGCGGCGGCGAGGTGGGCTGGTACGTNCTCGGACCGAACCAGGAGCACGTCGGCCCCTACGCGNTCTCCGAGCTGCGAGAACATTTTGATAATGGGTACATCAGTGAGAGCTCAATGCTCTNGGCAGAAGGGAGGAGTNAATGGATGCCATTGTCGTCGATTNCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGA ] [+] EMBL CB641742 [ GTCGTACACAACCTCGCGCCGGTGAGCGGCGGCGCCGACGAAGCAGGACTCCCTCCGCCCAGCCCCATTCTCCCGCGTGGGGGGATCCATGGAGGGCGGCGGCGAGGTGGGCTGGTACGTGCTCGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAGAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGGGAGGAGTGAATGGATGCCATTGTCGTCGATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGGAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGGCAGAGGTGGAAGCCTCGACAGACAAGGCTGCAGATAACGACATAAACCAAGAACATGGGGCCGATGATCCTGATGACCGGCCAGCAACCCCACCAGATGGCGAGGACGAATTTACTGATGATGATGGTACTGTTTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAAGATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTTGCACATGAGGAAGAAGTTTTCCAAGCACCAGATATTGCTGGTTCAACCACATTAGAAGAAAACAATGTTTCTGCCGAAATTGAAATCAAAGAACCAACAAAGGTAGAAAAGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAGGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACATGTCTACGTTACTGGTTTGC ] [+] EMBL AY224465 [ GGCGGCGAGGTGGGCTGGTACGTGCTCGGCCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAGAACATTTTGCTAATGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGGGAGGAGTGAATGGATGCCATTGTCGTCGATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGGAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGGCAGAGGTGGAAGCCTCGACAGACAAGGCTGCAGATAACGACATAAACCAAGAACATGGGGCCGATGATCCTGATGACCGGCCAGCAACCCCACCAGATGGCGAGGACGAATTTACTGATGATGATGGTACTGTTTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAAGATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTTGCACATGAGGAAGAAGTTTTCCAAGCACCAGATATTGCTGGTTCAACCACATTAGAAGAAAACAATGTTTCTGCGGAAATTGAAATCAAAGAACCACCAAAGGTAGAAAAGAGAGCACATAAGAAGCGGAAGTCTTCTGAAAAGCCAGCCGATAAAAAGGAAGCTTACAAACCTCCAGATAGTTGGGTTGATCTCAAAGTTAACACACATGTCTACGTTACTGGTTTGCCTGATGATGTCACAGCTGAGGAGATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGGACCCAGAGACAAGAAAACCCCGAGTAAAAATCTATACTGACAGAGAAACAGGCAGAAAGAAAGGTGA ] [+] EMBL BP185007 [ acgaggCTTTTGCACATGAGGAAGAAGTTTTCCAAGCACCAGATATTGCTGGTTCAACCACATTAGAAGAAAACAATGTTTCTGCCGAAATTGAAATCAAAGAACCAACAAAGGTAGAAAAGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGCCGATAAAAAGGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACATGTCTACGTTACTGGTTTGCCTGATGATGTCACAGCTGAGGAGATTGTGGAGGTATTTTCCAAATGTGGAATTATAAAGGAGGACCCAGAGACAAGAAAACCCCGAGTAAAAATCTATACTGACAGAGAAACAGGCAGAAAGAAAGGTGATGCGCTAGTGACCTACCTCAAGGAGCCTTCTGTAGCACTAGCAATTCAACTGTTGGATGGGACATCATTTCGCCCTGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAGGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCCT ] [-] EMBL CB672536 [ CTGTTGGATGGGACATCATTTCGCCCTGGTGGTAAGACTCTAATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAGGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAGGTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGAAGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGTTTAATATTGCTCTGTAGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGTACGTGTACATTATATAGATTAAAAATGTTTTTTTCCTGATTAACATGTTCG TTTGACAAAATAAaaga ] [-] EMBL CB621221 [ AAATTTGAGCAGAAAGGGGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTCAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAGGTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGAAGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGTTTAATATTGCTCTGTAGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTCCAGTTAGCTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGTACGTGTACATTATATAGATT AAAC TTTTTTTTCCTGATTAACATGTT ] [+] EMBL CA766863 [ TACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTCAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAGGTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGAAGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGTTTAATATTGCTCTGTAGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGTACGTGTACACTATATAGATT AAACTTTTTTTTcc ] [-] EMBL CA762752 [ CGAGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTCAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAGGTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACTGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGTTGGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGAAGAGTCCACATAGCACGTCGAT ACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGTTTAATATTGCTCTGTGGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGTACGTGTACATTATATAGATT AAAC TTTTTTTTCCTGATTAACATGTTCGTTTTGACATATTAACTTCTACTTCTAGGCTTGTAGCAACTTGCTATCCTCCCTGGGTATGCATAAATCCACACTGATGATATCAAAAAAAAAAAA] consensusID : consensus_13385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence [GGCCAAATTTGAGCAGAAAGGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAGGTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGAAGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGTTTAATATTGCTCTGTAGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGTACGTGTACATTATATAGATTAAACTTTTTTTTTCCTGATTACAAAAAAAAAG] [-] EMBL CB641743 [GGCCAAATTTGAGCAGAAAGGTGATGTTTTCATTTCTAAGAAGACAGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGGTGGACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCCTGCTGAATTGCGAGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGAATGCATGAAGCTTGGTCCAGTTGATAATGTCAAGGTCTGTGAAAATCATCCAGAGGGTGTTATTTTGGTGAAATTCAAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGGAAGATGGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGAAGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGTTTAATATTGCTCTGTAGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGTACGTGTACATTATATAGATTAAACTTTTTTTTTCCTGATTACAAAAAAAAAG] consensusID : consensus_13385#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 348 fasta sequence [GAGTAGAAACGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCGGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGAAGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGTACGTGTACATTATATAGATTAAACTTTTTTTTTCCTGATTAAAAAAA] [+] EMBL CF327331 [GAGTAGAAACGAGTGAAGATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCGGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGAAGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGTACGTGTACATTATATAGATTAAACTTTTTTTTTCCTGATTAAAAAA ] [-] EMBL CF327330 [ ATGACGGTTCTATCAACCATGCTCTGATCCGTGATTATGATGCGGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGAAGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGATCAACTGGCGATCATTAATGCTAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTCCATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGTACGTGTACATTATATAGATTAAACTTTTTTTTTCCTGATTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13385#0 CAGCCTCCAAACCGCGCCCCCAAATTCCCCCTCTTCCGCCTCTCCGGCCGCCGCGTCGTA 60 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 CACAACCTCGCGCCGGTGAGCGGCGGCGCCGACGAAGCAGGACTCCCTCCGCCCAGCCCC 120 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 ATTCTCCCGCGTGGGGGGATCCATGGAGGGCGGCGGCGAGGTGGGCTGGTACGTGCTCGG 180 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 CCCGAACCAGGAGCACGTCGGCCCCTACGCGCTCTCCGAGCTGCGAGAACATTTTGCTAA 240 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 TGGGTACATCAGTGAGAGCTCAATGCTCTGGGCAGAAGGGAGGAGTGAATGGATGCCATT 300 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 GTCGTCGATTCCTGACCTACTTGCGGTGGTCACAAAAAAGGATCAACCTGATGAAGGAAT 360 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 TGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGGCAGAGGTGGAAGC 420 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 CTCGACAGACAAGGCTGCAGATAACGACATAAACCAAGAACATGGGGCCGATGATCCTGA 480 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 TGACCGGCCAGCAACCCCACCAGATGGCGAGGACGAATTTACTGATGATGATGGTACTGT 540 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 TTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAAGATGACCTAGAAGGCAAAAA 600 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 TGACAACTATGAAGTTGAAGACATGACTTTTGCACATGAGGAAGAAGTTTTCCAAGCACC 660 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 AGATATTGCTGGTTCAACCACATTAGAAGAAAACAATGTTTCTGCCGAAATTGAAATCAA 720 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 AGAACCAACAAAGGTAGAAAAGAGAGCAGATAAGAAGCGGAAGTCTTCTGAGAAGCCAGC 780 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 CGATAAAAAGGAAGCTAACAAACCTCCAGATAGTTGGTTTGATCTCAAAGTTAACACACA 840 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 TGTCTACGTTACTGGTTTGCCTGATGATGTCACAGCTGAGGAGATTGTGGAGGTATTTTC 900 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 CAAATGTGGAATTATAAAGGAGGACCCAGAGACAAGAAAACCCCGAGTAAAAATCTATAC 960 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 TGACAGAGAAACAGGCAGAAAGAAAGGTGATGCGCTAGTGACCTACCTCAAGGAGCCTTC 1020 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 TGTAGCACTAGCAATTCAACTGTTGGATGGGACATCATTTCGCCCTGGTGGTAAGACTCT 1080 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 AATGTCTGTTAGCCCGGCCAAATTTGAGCAGAAAGGTGATGTTTTCATTTCTAAGAAGAC 1140 consensus_13385#1 ---------------GGCCAAATTTGAGCAGAAAGGTGATGTTTTCATTTCTAAGAAGAC 45 consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 AGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGGTGG 1200 consensus_13385#1 AGATAAGCAAAAGAAAAGGAAAACCAAGAAAGTTGAGGATAAAATTCTAGGATGGGGTGG 105 consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 ACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCC 1260 consensus_13385#1 ACATGATGACAAGAAGGTGACGATTACAACTACAGTTATTTTGAGGCATATGTTCACTCC 165 consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 TGCTGAATTGCGAGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTCAGAGAAGA 1320 consensus_13385#1 TGCTGAATTGCGAGCCGATGAAACTCTTCTTCCCGAGCTTGAGGCAGATGTTAGAGAAGA 225 consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 ATGCATGAAGCTTGGTCCAGTTGATAATGTCAAGGTCTGTGAAAATCATCCAGAGGGTGT 1380 consensus_13385#1 ATGCATGAAGCTTGGTCCAGTTGATAATGTCAAGGTCTGTGAAAATCATCCAGAGGGTGT 285 consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 TATTTTGGTGAAATTCAAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGG 1440 consensus_13385#1 TATTTTGGTGAAATTCAAAGACCGGAAAGATGGTATCAAATGCATAGAGAAGATGAATGG 345 consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 AAGATGGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGC 1500 consensus_13385#1 AAGATGGTTTGGTGGGAATCAAATCCAGGCGAGTGAAGATGACGGTTCTATCAACCATGC 405 consensus_13385#2 --------------------GAGTAGAAACGAGTGAAGATGACGGTTCTATCAACCATGC 40 * * * ******************************* consensus_13385#0 TCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGA 1560 consensus_13385#1 TCTGATCCGTGATTATGATGCAGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGA 465 consensus_13385#2 TCTGATCCGTGATTATGATGCGGAGGTGTCAAGGCTTGATCGATTTGGAGAAGAGTTAGA 100 ********************* ************************************** consensus_13385#0 AGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGA 1620 consensus_13385#1 AGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGA 525 consensus_13385#2 AGAGTCCACATAGCACGTCGATAAACTGGCGATTAATATTACTCTGCAGCTGATGGTCGA 160 ************************************************************ consensus_13385#0 TCAACTGGCGTTTAATATTGCTCTGTAGCTGATGGTCGATCAACTGGCGATCATTAATGC 1680 consensus_13385#1 TCAACTGGCGTTTAATATTGCTCTGTAGCTGATGGTCGATCAACTGGCGATCATTAATGC 585 consensus_13385#2 TCAACTGGCG---------------------------------------ATCATTAATGC 181 ********** *********** consensus_13385#0 TAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTC 1740 consensus_13385#1 TAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTC 645 consensus_13385#2 TAGCTGATAGCATGAGAGTACAAAGTTTTACAGTTAGCTCTTTGCGTAGGTTGGATCTTC 241 ************************************************************ consensus_13385#0 CATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGT 1800 consensus_13385#1 CATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGT 705 consensus_13385#2 CATTTGCCATGTTAATCTTATCAAAACTGCTTCTGGGTTTTACCTTCTATCACCACCAGT 301 ************************************************************ consensus_13385#0 ACGTGTACATTATATAGATTAAACTTTTTTTTTCCTGATTAACATGTTCGTTTTGACATA 1860 consensus_13385#1 ACGTGTACATTATATAGATTAAACTTTTTTTTTCCTGATTACAAAAAAAAAG-------- 757 consensus_13385#2 ACGTGTACATTATATAGATTAAACTTTTTTTTTCCTGATTAAAAAAA------------- 348 ***************************************** * consensus_13385#0 TTAACTTCTACTTCTAGGCTTGTAGCAACTTGCTATCCTCCTTGGTATGCATAAATCCAC 1920 consensus_13385#1 ------------------------------------------------------------ consensus_13385#2 ------------------------------------------------------------ consensus_13385#0 ACTGATGATATCAAAAAAAAAAAA 1944 consensus_13385#1 ------------------------ consensus_13385#2 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||