cluster # 13389

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Oryza sativa
cluster # 13389 cluster # 13389 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13389#0 length = 1699 sequences # 8
consensus_13389#1 length = 797 sequences # 1

consensus_13389#2 length = 631 sequences # 1
consensus_13389#3 length = 425 sequences # 3

consensusID : consensus_13389#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1699
fasta sequence

                              [CGCACCCGCACTCCAACCAGCGCGA-CGGCGTCCTCCTCCTCCGTCGGCGTCGGCGGCGGCGGCGACGGCCATGGACTTCGGGTACGTCGGCGTGGGGCAGGGGAGCTCGTCGTCGTCGTCGTCGGCGTCGTGCCGAGCGGCGGACGTGGCGGCGTGGGGATCCTCCACCCAGCAGCAGCAGAAGCGGCAGCGGTGCCAGGGTTCTTCTGATGACCAAGTTGGATTGAGCACAAGTAATTCTTTGCAAATGTCAGAACCAGAGCCTCGAGATTTTGATAATGGAGAAAATGAGGAAGAAGATTAC-TATCTGGACGAGGACGATTGC-ATTTATGATGATGGCGATGGATATGATTATGAA-TTTGATGGCGGTGACTAC-TTCAACCAACGTC-TTGCTGATAAA-TTTGATGATTTGGATTTGCCTCCAGGCGTGGAGGCTACTGTACCTTGGCTTCAGAAAATTATAACTAACGAAGAGCAAAGCAGTTCCAAATTGACAGTTGAAGATGAAAGCGCAAATAAAAGTGCAAATAAATCTCAGTTGTTCAAACAGTTTGACACTGTTAAAAATTTCTCTGATCATCATTATGCAGCAACATCAGGGGATGTGACAAAGAGAGACTGGGTGAAGAGGATTCAGCATGACTGGAAACTTTTGGAGAAAGATCTACCAGCATCTATTTATGTCCGTGTTGCTGAAGATAGAATGGACCTTCTTAGGGCTGCTATTATCGGACCTAAGGGAACACCGTACCACGATGGGCTCTTCTTCTTTGATATTCAATTTAGTAACTCTTACCCTGCTAATCCTCCATCAGTATACTACCACTCTGGCGGACTACGGATTAACCCAAACTTATACAATAATGGAAAAGTATGCCTTAGTCTTCTTGGTACCTGGGCAGGTAGTGGTTGTGAGACGTGGAATCCATCTCAGTCGACCATGCTACAAGTGCTCGTCT-CCATTCAAGCTCTCATTTTGAATGAGAAGCCCTACTTCAATGAGCCAGGATATGCATCCTACGCCAATAGTGTATCTGGAGAGCGGATTGCTATGGAGTATAACGACAACACATTTCTGCACTCATGCAGGACGATGCTCTACTCACTTCGGCGGCCTCCAGAGCACTTCGCAGACCTTGTTACCAGCCACTTCAGGGAGCGCGGGCACACCATCCTGGCAGCATGCAGGTACTACATGGAAGGCCACAAGGTCGGATCG-GTGGTCCCCGAAGA-GAAGGAGCCGGAGTACGGC-GACGCGGGAGCATCCACCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGCGCTGAAGCCGCGGCCGGACAAGGTGGATTCCG-TC-AGTAGACGCCCCACGTTCAACGACAACCTCAAGACGCTGTTCGAGGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGACA-CGGCCAAGTTCCTCG-CCGAGAAGGTGAAGAAGAGCTCTGGTGCAAC-AACTACTGCGCCTGTAGGAGGCGCCCGTTATGCA-GCAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGTTAATATCTT--TCTCTCTCTTTTTTATTTCGTAGTACATAATTAGCTTATGGTTGCTAGGACTGGACTGGGCTGAACCTGTTGACCAAGATGATG-AATTAAATAGATATATGCCTATCCATCTCAAGGCTCTTAAGACATCAAAAAA]

[+] EMBL AK067926             [CGCACCCGCACTCCAACCAGCGCGAGCGGCGTCCTCCTCCTCCGTCGGCGTCGGCGGCGGCGGCGACGGCCATGGACTTCGGGTACGTCGGCGTGGGGCAGGGGAGCTCGTCGTCGTCGTCGTCGGCGTCGTGCCGAGCGGCGGACGTGGCGGCGTGGGGATCCTCCACCCAGCAGCAGCAGAAGCGGCAGCGGTGCCAGGGTTCTTCTGATGACCAAGTTGGATTGAGCACAAGTAATTCTTTGCAAATGTCAGAACCAGAGCCTCGAGATTTTGATAATGGAGAAAATGAGGAAGAAGATTAC TATCTGGACGAGGACGATTGC ATTTATGATGATGGCGATGGATATGATTATGAA TTTGATGGCGGTGACTAC TTCAACCAACGTC TTGCTGATAAA TTTGATGATTTGGATTTGCCTCCAGGCGTGGAGGCTACTGTACCTTGGCTTCAGAAAATTATAACTAACGAAGAGCAAAGCAGTTCCAAATTGACAGTTGAAGATGAAAGCGCAAATAAAAGTGCAAATAAATCTCAGTTGTTCAAACAGTTTGACACTGTTAAAAATTTCTCTGATCATCATTATGCAGCAACATCAGGGGATGTGACAAAGAGAGACTGGGTGAAGAGGATTCAGCATGACTGGAAACTTTTGGAGAAAGATCTACCAGCATCTATTTATGTCCGTGTTGCTGAAGATAGAATGGACCTTCTTAGGGCTGCTATTATCGGACCTAAGGGAACACCGTACCACGATGGGCTCTTCTTCTTTGATATTCAATTTAGTAACTCTTACCCTGCTAATCCTCCATCAGTATACTACCACTCTGGCGGACTACGGATTAACCCAAACTTATACAATAATGGAAAAGTATGCCTTAGTCTTCTTGGTACCTGGGCAGGTAGTGGTTGTGAGACGTGGAATCCATCTCAGTCGACCATGCTACAAGTGCTCGTCT CCATTCAAGCTCTCATTTTGAATGAGAAGCCCTACTTCAATGAGCCAGGATATGCATCCTACGCCAATAGTGTATCTGGAGAGCGGATTGCTATGGAGTATAACGACAACACATTTCTGCACTCATGCAGGACGATGCTCTACTCACTTCGGCGGCCTCCAGAGCACTTCGCAGACCTTGTTACCAGCCACTTCAGGGAGCGCGGGCACACCATCCTGGCAGCATGCAGGTACTACATGGAAGGCCACAAGGTCGGATCG GTGGTCCCCGAAGA GAAGGAGCCGGAGTACGGC GACGCGGGAGCATCCACCAGCAGCGCCAGCGCCCGCGCCGCCGCCGCCGCTCTGAAGCCGCGGCCGGACAAGGTGGATTCCG TC AGTAGACGCCCCACGTTCAACGACAACCTCAAGACGCTGTTCGAGGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGACA CGGCCAAGTTCCTCG CCGAGAAGGTGAAGAAGAGCTCTGGTGCAAC AACTACTGCGCCTGTAGGAGGCGCCCGTTATGCA GCAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGTTAATATCTT  TCTCTCTCTTTTTTATTTCGTAGTACATAATTAGCTTATGGTTGCTAGGACTGGACTGGGCTGAACCTGTTGACCAAGATGATG AATTAAATAGATATATGCCTATCCATCTCAAGGCTC                ]
[+] EMBL AU070209             [              AACCAGCGCGA CGNCGTCCTCCTCCTCCGTCGGCGTCGGCGGCGGCGGCGACGGCCATGGACTTCGGGTACGTCGGCGTGGGGCAGGGGAGCTCGTCGTCGTCGTCGTCGGCGTCGTGCCGAGCGGCGGACGTGGCGGCGTGGGGATCCTCCACCCAGCAGCAGCAGAAGCGGCAG GNTGCCAGGGTTCTTCTGATGACCAAGTTGGATTGAGCACAAGTAATTCTTTGCAAATGTCAGAACCAGAGCCTCGAGATTTTGATAATGGAGAAAATGAGGAAGAAGATTAC TATCTGGACGAGGACGATTGC ATTTATGATGATGGCGATGGATATGATTATGAATTTTGATGGCGGTGACTACTTTCAACCAACGTCTTTGCTGATAAANTTTGATGNTTTttgat                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU070210             [              AACCAGCGCGA CGGCGTCCTCCTCCTCCGTCGGCGTCGGCGGCGGCGGCGACGGCCATGGACTTCGGGTACGTCGGCGTGGGGCAGGGGAGCTCGTCGTCGTCGTCGTCGGCGTCGTGCCGAGCGGCGGACGTGGCGGCGTGGGGATCCTCCACCCAGCAGCAGCAGAAGCGGCAGCGGTGCCAGGGTTCTTCTGATGACCAAGTTGGATTGAGCACAAGTAATTCTTTGCAAATGTCAGAACCAGAGCCTCGAGATTTTGATAATNGAGAAAATGAGGAAGAAGATTACTTATCTNGACGAGGACGATTNCAATTTATGATGATGGCGATGGATATGATTATGAT TTTGATGGCGGTtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB658559             [                                                                                                                                                                                                              TCTGATGACCAAGTTGGATTGAGCACAAGTAATTCTTTGCAAATGTCAGAACCAGAGCCTCGAGATTTTGATAATGGAGAAAATGAGGAAGAAGATTAC TATCTGGACGAGGACGATTGC ATTTATGATGATGGCTATGGATATGATTATGAA TTTGATGGCGGTGACTAC TTCAACCAACGTC TTGCTGATAAA TTTGATGATTTGGATTTGCCTCCAGGCGTGGAGGCTACTGTACCTTGGCTTCAGAAAATTATAACTAACGAAGAGCAAAGCAGTTCCAAATTGACAGTTGAAGATGAAAGCGCAAATAAAAGTGCAAATAAATCTCAGTTGTTCAAACAGTTTGACACTGTTAAAAATTTCTCTGATCATCATTATGCAGCAACATCAGGGGATGTGACAAAGAGAGACTGGGTGAAGAGGATTCAGCATGACTGGAAACTTTTGGAGAAAGATCTACCAGCATCTATTTATGTCCGTGTTGCTGAAGATAGAATGGACCTTCTTAGGGCTGCTATTATCGGACCTAAGGGAACACCGTACCACGATGGGCTCTTCTTCTTTGATATTCAATTTAGTAACTCTTACCCTGCTAATCCTCCATCAGTATACTACCACTCTGGCGGACTACGGATTAACCCAAACTTATACAATAATGGAAAAGTATGCCTTAGTCTTCTTGGTACCTGNGCAGGTAGTGGTTGTGAGACGTGGAATCCATCTCAGTCGACCATGCTACAAGTGCTCGTCTCCCATTC AGCTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK119659             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AACTCTTACCCTGCTAATCCTCCATCAGTATACTACCACTCTGGCGGACTACGGATTAACCCAAACTTATACAATAATGGAAAAGTATGCCTTAGTCTTCTTGGTACCTGGGCAGGTAGTGGTTGTGAGACGTGGAATCCATCTCAGTCGACCATGCTACAAGTGCTCGTCT CCATTCAAGCTCTCATTTTGAATGAGAAGCCCTACTTCAATGAGCCAGGATATGCATCCTACGCCAATAGTGTATCTGGAGAGCGGATTGCTATGGAGTATAACGACAACACATTTCTGCACTCATGCAGGACGATGCTCTACTCACTTCGGCGGCCTCCAGAGCACTTCGCAGACCTTGTTACCAGCCACTTCAGGGAGCGCGGGCACACCATCCTGGCAGCATGCAGGTACTACATGGAAGGCCACAAGGTCGGATCG GTGGTCCCCGAAGA GAAGGAGCCGGAGTACGGC GACGCGGGAGCATCCACCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGCTCTGAAGCCGCGGCCGGACAAGGTGGATTCCG TC AGTAGACGCCCCACGTTCAACGACAACCTCAAGACGCTGTTCGAGGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGACA CGGCCAAGTTCCTCG CCGAGAAGGTGAAGAAGAGCTCTGGTGCAAC AACTACTGCGCCTGTAGGAGGCGCCCGTTATGCA GCAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGTTAATATCTT  TCTCTCTCTTTTTTATTTCGTAGTACATAATTAGCTTATGGTTGCTAGGACTGGACTGGGCTGAACCTGTTGACCAAGATGATG AATTAAATAGATATATGCCTATCCATCTCAAGG                   ]
[+] EMBL BI808627             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGCGGGCACACCATCCTGGCAGCATGCAGGTACTACATGGAAGGCCACAAGGTCGGATCG GTGGTCCCCGAAGA GAAGGAGCCGGAGTACGGC GACGCGGGAGCATCCACCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGCGCTGAAGCCGCGGCCGGACAAGGTGGATTCCG TC AGTAGACGCCCCACGTTCAACGACAACCTCAAGACGCTGTTCGAGGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGACA CGGCCAAGTTCCTCG CCGAGAAGGTGAAGAAGAGCTCTGGTGCAAC AACTACTGCGCCTGTAGGAGGCGCCCGTTATGCA GCAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGTTAATATCTTTCTCTCTCTCTTTTTTATTTCGTAGTACATAATTAGCTTATGGTTGCTAGGACTGGACTGGGCTGAACCTGTTGACCAAGATGATG AATTAAATAGATATATGCCTATCCATCTCAAGGCTCTTAAGACATCAAAAAA]
[+] EMBL BM038984             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TACATGGAA GCCACAAGTTCGGATCGTGTGTTCCCCGAAGA GAAGGA CCGGAGTACGGCAGACGCGGGAGCATCCACCAGCAGCCCCAGCGCCAGC CC CC CC CCGCGCTGAA CCGC GCCCGACAAGGTGGATTCCGCTCAAGTAGACGCCCCACGTTCAACGACAACCTCAAGACGCTGTTCGAGGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGACACCGGCCAAGTTCCTCGCCCGAGAAGGTGAAGAAGAGCTCTGGTGCAACAAACTACTGCGCCTGTAGGAGGCGCCCGTTATCCACCCAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGTTAATATCTTTCTCTCTCTCTTTTTTATTTCGTAGTACATAATTAGCTTATGGTTGCTAGGACTGGACTGGGCTGAACCTGTTGACCAAGATGATGCAATTAAATAGATATATGCCTATCCAaaa                        ]
[+] EMBL BM421157             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            tgttTCCCCGAAGAGGAAGGACCCGGAGTACGGC GACGCGGGAGCATCCACCAGCAGCGCCAGCGCCAGC CC CCGCCGCCGCGCTGAAGCCGCGGCCGGACAAGGTGGATTCCG TC AGTAGACGCCCCACGTTCAACGACAACCTCAAGACGCTGTTCGAGGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGACA CGGCCAAGTTCCTCG CCGAGAAGGTGAAGAAGAGCTCTGGTGCAAC AACTACTGCGCCTGTAGGAGGCGCCCGTTATGCA GCAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGTTAATATCTTTCTCTCTCTCTTTTTTATTTCGTAGTACATAATTAGCTTATGGTTGCTAGGACTGGACTGGGCTGAACCTGTTGACCAAGATGATG AATTNAATAGATATATGCCTATCCATCTCAAaaa                  ]




>consensus_13389#0
CGCACCCGCACTCCAACCAGCGCGACGGCGTCCTCCTCCTCCGTCGGCGTCGGCGGCGGC
GGCGACGGCCATGGACTTCGGGTACGTCGGCGTGGGGCAGGGGAGCTCGTCGTCGTCGTC
GTCGGCGTCGTGCCGAGCGGCGGACGTGGCGGCGTGGGGATCCTCCACCCAGCAGCAGCA
GAAGCGGCAGCGGTGCCAGGGTTCTTCTGATGACCAAGTTGGATTGAGCACAAGTAATTC
TTTGCAAATGTCAGAACCAGAGCCTCGAGATTTTGATAATGGAGAAAATGAGGAAGAAGA
TTACTATCTGGACGAGGACGATTGCATTTATGATGATGGCGATGGATATGATTATGAATT
TGATGGCGGTGACTACTTCAACCAACGTCTTGCTGATAAATTTGATGATTTGGATTTGCC
TCCAGGCGTGGAGGCTACTGTACCTTGGCTTCAGAAAATTATAACTAACGAAGAGCAAAG
CAGTTCCAAATTGACAGTTGAAGATGAAAGCGCAAATAAAAGTGCAAATAAATCTCAGTT
GTTCAAACAGTTTGACACTGTTAAAAATTTCTCTGATCATCATTATGCAGCAACATCAGG
GGATGTGACAAAGAGAGACTGGGTGAAGAGGATTCAGCATGACTGGAAACTTTTGGAGAA
AGATCTACCAGCATCTATTTATGTCCGTGTTGCTGAAGATAGAATGGACCTTCTTAGGGC
TGCTATTATCGGACCTAAGGGAACACCGTACCACGATGGGCTCTTCTTCTTTGATATTCA
ATTTAGTAACTCTTACCCTGCTAATCCTCCATCAGTATACTACCACTCTGGCGGACTACG
GATTAACCCAAACTTATACAATAATGGAAAAGTATGCCTTAGTCTTCTTGGTACCTGGGC
AGGTAGTGGTTGTGAGACGTGGAATCCATCTCAGTCGACCATGCTACAAGTGCTCGTCTC
CATTCAAGCTCTCATTTTGAATGAGAAGCCCTACTTCAATGAGCCAGGATATGCATCCTA
CGCCAATAGTGTATCTGGAGAGCGGATTGCTATGGAGTATAACGACAACACATTTCTGCA
CTCATGCAGGACGATGCTCTACTCACTTCGGCGGCCTCCAGAGCACTTCGCAGACCTTGT
TACCAGCCACTTCAGGGAGCGCGGGCACACCATCCTGGCAGCATGCAGGTACTACATGGA
AGGCCACAAGGTCGGATCGGTGGTCCCCGAAGAGAAGGAGCCGGAGTACGGCGACGCGGG
AGCATCCACCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGCGCTGAAGCCGCGGCCGGA
CAAGGTGGATTCCGTCAGTAGACGCCCCACGTTCAACGACAACCTCAAGACGCTGTTCGA
GGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGACACGGCCAAGTTCCTCGCCGAGAA
GGTGAAGAAGAGCTCTGGTGCAACAACTACTGCGCCTGTAGGAGGCGCCCGTTATGCAGC
AGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGTTAATAT
CTTTCTCTCTCTTTTTTATTTCGTAGTACATAATTAGCTTATGGTTGCTAGGACTGGACT
GGGCTGAACCTGTTGACCAAGATGATGAATTAAATAGATATATGCCTATCCATCTCAAGG
CTCTTAAGACATCAAAAAA

consensusID : consensus_13389#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 797
fasta sequence

                              [GAATCCTGCTTATTTTTGTTTTATGTAGCATCTATTTATGTCCGTGTTGCTGAAGATAGAATGGACCTTCTTAGGGCTGCTATTATCGGACCTAAGGGAACACCGTACCACGATGGGCTCTTCTTCTTTGATATTCAATTTAGTAACTCTTACCCTGCTAATCCTCCAGTATGTGCCTAAGTCTCAGCACTGCTTTTATGACATTTTCACCTTTTTATTTTGTTGAAATATTTGTTGTTGATGATGTTGCAGTCAGTATACTACCACTCTGGCGGACTACGGATTAACCCAAACTTATACAATAATGGAAAAGTATGCCTTAGTCTTCTTGGTACCTGGGCAGGTAGTGGTTGTGAGACGTGGAATCCATCTCAGTCGACCATGCTACAAGTGCTCGTCTCCATTCAAGCTCTCATTTTGAATGAGAAGCCCTACTTCAATGAGCCAGGATATGCATCCTACGCCAATAGTGTATCTGGAGAGCGGATTGCTATGGAGTATAACGACAACACATTTCTGCACTCATGCAGGACGATGCTCTACTCACTTCGGCGGCCTCCAGAGGTAATATTTTTGTTAATTTTTGCATTTTTTTTAGACGGAGGGAGTACTGATTATGGTTAGCACGCAGAACATAGAGATTGATGGAGGGTTAAAGGTTATTTTTTCTTGAAAATAATGATTATAGGTGGAGGATGAAACGGAGAAGTTTGCTGAATAAACACACATGATTTGATTTGACTATAGCTTGGTGCTGGATTATGTTACCAACCCTACTTCCAATTNTTTACATCTCA]

[+] EMBL CB682167             [GAATCCTGCTTATTTTTGTTTTATGTAGCATCTATTTATGTCCGTGTTGCTGAAGATAGAATGGACCTTCTTAGGGCTGCTATTATCGGACCTAAGGGAACACCGTACCACGATGGGCTCTTCTTCTTTGATATTCAATTTAGTAACTCTTACCCTGCTAATCCTCCAGTATGTGCCTAAGTCTCAGCACTGCTTTTATGACATTTTCACCTTTTTATTTTGTTGAAATATTTGTTGTTGATGATGTTGCAGTCAGTATACTACCACTCTGGCGGACTACGGATTAACCCAAACTTATACAATAATGGAAAAGTATGCCTTAGTCTTCTTGGTACCTGGGCAGGTAGTGGTTGTGAGACGTGGAATCCATCTCAGTCGACCATGCTACAAGTGCTCGTCTCCATTCAAGCTCTCATTTTGAATGAGAAGCCCTACTTCAATGAGCCAGGATATGCATCCTACGCCAATAGTGTATCTGGAGAGCGGATTGCTATGGAGTATAACGACAACACATTTCTGCACTCATGCAGGACGATGCTCTACTCACTTCGGCGGCCTCCAGAGGTAATATTTTTGTTAATTTTTGCATTTTTTTTAGACGGAGGGAGTACTGATTATGGTTAGCACGCAGAACATAGAGATTGATGGAGGGTTAAAGGTTATTTTTTCTTGAAAATAATGATTATAGGTGGAGGATGAAACGGAGAAGTTTGCTGAATAAACACACATGATTTGATTTGACTATAGCTTGGTGCTGGATTATGTTACCAACCCTACTTCCAATTNTTTACATCTCA]




>consensus_13389#1
GAATCCTGCTTATTTTTGTTTTATGTAGCATCTATTTATGTCCGTGTTGCTGAAGATAGA
ATGGACCTTCTTAGGGCTGCTATTATCGGACCTAAGGGAACACCGTACCACGATGGGCTC
TTCTTCTTTGATATTCAATTTAGTAACTCTTACCCTGCTAATCCTCCAGTATGTGCCTAA
GTCTCAGCACTGCTTTTATGACATTTTCACCTTTTTATTTTGTTGAAATATTTGTTGTTG
ATGATGTTGCAGTCAGTATACTACCACTCTGGCGGACTACGGATTAACCCAAACTTATAC
AATAATGGAAAAGTATGCCTTAGTCTTCTTGGTACCTGGGCAGGTAGTGGTTGTGAGACG
TGGAATCCATCTCAGTCGACCATGCTACAAGTGCTCGTCTCCATTCAAGCTCTCATTTTG
AATGAGAAGCCCTACTTCAATGAGCCAGGATATGCATCCTACGCCAATAGTGTATCTGGA
GAGCGGATTGCTATGGAGTATAACGACAACACATTTCTGCACTCATGCAGGACGATGCTC
TACTCACTTCGGCGGCCTCCAGAGGTAATATTTTTGTTAATTTTTGCATTTTTTTTAGAC
GGAGGGAGTACTGATTATGGTTAGCACGCAGAACATAGAGATTGATGGAGGGTTAAAGGT
TATTTTTTCTTGAAAATAATGATTATAGGTGGAGGATGAAACGGAGAAGTTTGCTGAATA
AACACACATGATTTGATTTGACTATAGCTTGGTGCTGGATTATGTTACCAACCCTACTTC
CAATTNTTTACATCTCA

consensusID : consensus_13389#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence

                              [CACTCATGCAGGAGGATGTTTTATTCATTTGGGGGGCCTCCAGAGCATTTGGCAGCCCTTGTTACCAGCCACTTCAGGGAGGGGGGGCACCCCTTCTTGGCAGCATGCAGGTATTCCATGGAAGGCCCCAAGGTCGGATCGGTGTTCCCCGAAGAGAAGGAGCCGGAGTACGGCGACGCGGGAGCATCCCCCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGTTTTGAAGCCGCGGCCGGACAAGGTGGATTCCGTCAGTAGACCCCCCCCGTTCAACGACACCCTCAAGACGCTGTTCGAGGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGCCCCGGCCAAGTTCCTCCCCGAGAAGGTGAAGAAGAGTTTTGGTGCAACAACTACTGCCCCTGTAGGAGGCCCCCGTTATGCACCAAAAGTGGTGGATGAGTGGATGGATTATTTTGCTTTCCCTAACTGCAGAGAAGTTAATATCTTTTTCTTTCTTTTTTATTTCGTAGTCCATAATTAGCTTATGGTTGTTAGGACTGGACTGGGCTGACCCTGTTGCCCAAAATGATGAATTAAATAGATATATCCCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA]

[-] EMBL CB658560             [CACTCATGCAGGAGGATGTTTTATTCATTTGGGGGGCCTCCAGAGCATTTGGCAGCCCTTGTTACCAGCCACTTCAGGGAGGGGGGGCACCCCTTCTTGGCAGCATGCAGGTATTCCATGGAAGGCCCCAAGGTCGGATCGGTGTTCCCCGAAGAGAAGGAGCCGGAGTACGGCGACGCGGGAGCATCCCCCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGTTTTGAAGCCGCGGCCGGACAAGGTGGATTCCGTCAGTAGACCCCCCCCGTTCAACGACACCCTCAAGACGCTGTTCGAGGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGCCCCGGCCAAGTTCCTCCCCGAGAAGGTGAAGAAGAGTTTTGGTGCAACAACTACTGCCCCTGTAGGAGGCCCCCGTTATGCACCAAAAGTGGTGGATGAGTGGATGGATTATTTTGCTTTCCCTAACTGCAGAGAAGTTAATATCTTTTTCTTTCTTTTTTATTTCGTAGTCCATAATTAGCTTATGGTTGTTAGGACTGGACTGGGCTGACCCTGTTGCCCAAAATGATGAATTAAATAGATATATCCCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA]




>consensus_13389#2
CACTCATGCAGGAGGATGTTTTATTCATTTGGGGGGCCTCCAGAGCATTTGGCAGCCCTT
GTTACCAGCCACTTCAGGGAGGGGGGGCACCCCTTCTTGGCAGCATGCAGGTATTCCATG
GAAGGCCCCAAGGTCGGATCGGTGTTCCCCGAAGAGAAGGAGCCGGAGTACGGCGACGCG
GGAGCATCCCCCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGTTTTGAAGCCGCGGCCG
GACAAGGTGGATTCCGTCAGTAGACCCCCCCCGTTCAACGACACCCTCAAGACGCTGTTC
GAGGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGCCCCGGCCAAGTTCCTCCCCGAG
AAGGTGAAGAAGAGTTTTGGTGCAACAACTACTGCCCCTGTAGGAGGCCCCCGTTATGCA
CCAAAAGTGGTGGATGAGTGGATGGATTATTTTGCTTTCCCTAACTGCAGAGAAGTTAAT
ATCTTTTTCTTTCTTTTTTATTTCGTAGTCCATAATTAGCTTATGGTTGTTAGGACTGGA
CTGGGCTGACCCTGTTGCCCAAAATGATGAATTAAATAGATATATCCCTTTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA

consensusID : consensus_13389#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 425
fasta sequence

                              [GTACGGCGACGCGGGAGCATCCACCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGCTCTGAAGCCGCGGCCGGAC-AAGGTGGATTCC-GTC--AGTAGAC-GCCCCAC-GTTCAACGAC-AACCTCAAGACGCTGTTCGAGGAGCTCCT-GATGGAGTTC-AACGTGAAGGGCGCC-GACACGGC-C-AAGTTCCTC-GCCGAGAAGGTGAAGAAGAG-CTCTGGTGC-AAC-AACTACTGCGCCTGTAGGAGGCGCCCGTTATGCAGCAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGTTAATATCTTTCTCTCTCTTTTTTATTTCGTAGTACATAATTAGCTTATGGTTGCTAGGACTGGACTGGGCTGAACCTGTTGACCAAGATGATGAATTAAATAGATAAAAAAAAAAA]

[+] EMBL AU184733             [GTACGGCGACGCGGGAGCATCCACCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGCTCTGAAGCCGCGGCCGGAC AAGGTGGATTCC GTC  AGTAGAC GCCCCAC GTTCAACGAC AACCTCAAGACGCTGTTCGAGGAGCTCCT GATGGAGTTC AACGTGAAGGGCGCC GACACGGC C AAGTTCCTC GCCGAGAAGGTGAAGAAGAG CTCTGGTGC AAC AACTACTGCGCCTGTAGGAGGCGCCCGTTATGCAGCAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGTTAATATCTTTCTCTCTCTTTTTTATTTCGTAGTACATAATTAGCTTATGGTTGCTAGGACTGGACTGGGCTGAACCTGTTGACCAAGATGATGAATTAAATAGATAAAAAAAAAAA]
[+] EMBL BI800104             [                                                                    cccgGGACAAAGGTGGATTCCGGTCAAAGTAGACGGCCCCACGGTTCAACGACAAACCTCAAGACGCTGTTCGAGGAGCTCCTGGATGGAGTTCAAACGTGAAGGGCGCCGGACACGGCACAAAGTTCCTCAGCCGAGAAGGTGAAGAAGAGTCTCTGGTGCAAACAAACTACTGCGCCTGTAGGAGGCGCCCGTTATGCACCAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAG                                                                                                                          ]
[+] EMBL AU184732             [                                                                                                                                               GAGCTCCT GATGGAGTTC AACGTGAAGGGCGCC GNCACGGC C AAGTTCCTC TCCGAGAAGGTGAAGAAGAG CTNTGGTGC AAC AACTACTGCGCCTGTAGGAGGCGCCCGTTATGCAGCAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGTTAATATCTTTCTCTCTCTTTTTTATTTCGTAGTACATAATTAGCTTATGGTTGCTAGGACTGGACTGGGCTGAACCTGTTGACCAAGATGATGAATTAAATAGATAAAAAAAAAAA]




>consensus_13389#3
GTACGGCGACGCGGGAGCATCCACCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGCTCT
GAAGCCGCGGCCGGACAAGGTGGATTCCGTCAGTAGACGCCCCACGTTCAACGACAACCT
CAAGACGCTGTTCGAGGAGCTCCTGATGGAGTTCAACGTGAAGGGCGCCGACACGGCCAA
GTTCCTCGCCGAGAAGGTGAAGAAGAGCTCTGGTGCAACAACTACTGCGCCTGTAGGAGG
CGCCCGTTATGCAGCAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTG
CAGAGAAGTTAATATCTTTCTCTCTCTTTTTTATTTCGTAGTACATAATTAGCTTATGGT
TGCTAGGACTGGACTGGGCTGAACCTGTTGACCAAGATGATGAATTAAATAGATAAAAAA
AAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      CGCACCCGCACTCCAACCAGCGCGACGGCGTCCTCCTCCTCCGTCGGCGTCGGCGGCGGC 60
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      GGCGACGGCCATGGACTTCGGGTACGTCGGCGTGGGGCAGGGGAGCTCGTCGTCGTCGTC 120
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      GTCGGCGTCGTGCCGAGCGGCGGACGTGGCGGCGTGGGGATCCTCCACCCAGCAGCAGCA 180
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      GAAGCGGCAGCGGTGCCAGGGTTCTTCTGATGACCAAGTTGGATTGAGCACAAGTAATTC 240
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      TTTGCAAATGTCAGAACCAGAGCCTCGAGATTTTGATAATGGAGAAAATGAGGAAGAAGA 300
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      TTACTATCTGGACGAGGACGATTGCATTTATGATGATGGCGATGGATATGATTATGAATT 360
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      TGATGGCGGTGACTACTTCAACCAACGTCTTGCTGATAAATTTGATGATTTGGATTTGCC 420
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      TCCAGGCGTGGAGGCTACTGTACCTTGGCTTCAGAAAATTATAACTAACGAAGAGCAAAG 480
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      CAGTTCCAAATTGACAGTTGAAGATGAAAGCGCAAATAAAAGTGCAAATAAATCTCAGTT 540
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      GTTCAAACAGTTTGACACTGTTAAAAATTTCTCTGATCATCATTATGCAGCAACATCAGG 600
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      GGATGTGACAAAGAGAGACTGGGTGAAGAGGATTCAGCATGACTGGAAACTTTTGGAGAA 660
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      AGATCTACCAGCATCTATTTATGTCCGTGTTGCTGAAGATAGAATGGACCTTCTTAGGGC 720
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      TGCTATTATCGGACCTAAGGGAACACCGTACCACGATGGGCTCTTCTTCTTTGATATTCA 780
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      ATTTAGTAACTCTTACCCTGCTAATCCTCCATCAGTATACTACCACTCTGGCGGACTACG 840
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      GATTAACCCAAACTTATACAATAATGGAAAAGTATGCCTTAGTCTTCTTGGTACCTGGGC 900
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      AGGTAGTGGTTGTGAGACGTGGAATCCATCTCAGTCGACCATGCTACAAGTGCTCGTCTC 960
consensus_13389#1      ------------------------------------------------------------
                                                                                   

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      CATTCAAGCTCTCATTTTGAATGAGAAGCCCTACTTCAATGAGCCAGGATATGCATCCTA 1020
consensus_13389#1      -------------------------------------------------------GAATC 5
                                                                                   

consensus_13389#2      ----------------------------------------------------------CA 2
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      CGCCAATAGTGTATCTGGAGAGCGGATTGCTATGGAGTATAACGACAACACATTTCTGCA 1080
consensus_13389#1      CTGCTTATTTTTGTTTTATGTAGCATCTATTTATGTCCGTGTTGCTGAAGATAGAATGGA 65
                                                                                   

consensus_13389#2      CTCATGCAGGAGGATGTTTTATTCATTTGGGGGGCCTCCAGAGCATTTGGCAGCCCTTGT 62
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      CTCATGCAGGACGATGCTCTACTCACTTCGGCGGCCTCCAGAGCACTTCGCAGACCTTGT 1140
consensus_13389#1      CCTTCTTAGGGCTGCTATTATCGGACCTAAGGGAACACCGTACCACGATG-GGCTCTTCT 124
                                                                                   

consensus_13389#2      TACCAGCCACTTCAGGGAGGGGGGGCACCCCTTCTTGGCAGCATGCAGGTATTCCATGGA 122
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      TACCAGCCACTTCAGGGAGCGCGGGCACACCATCCTGGCAGCATGCAGGTACTACATGGA 1200
consensus_13389#1      TCTTTGATATTCAATTTAGTAACTCTTACCCTGCTAATCCTCCAGTATGTGCCTAAGTCT 184
                                                                                   

consensus_13389#2      AGGCCCCAAGGTCGGATCGGTGTTCCCCGAAGAGAAGGAGCCGGAGTACGGCGACGCGGG 182
consensus_13389#3      ---------------------------------------------GTACGGCGACGCGGG 15
consensus_13389#0      AGGCCACAAGGTCGGATCGGTGGTCCCCGAAGAGAAGGAGCCGGAGTACGGCGACGCGGG 1260
consensus_13389#1      CAGCACTGCTTTTATGACATTTTCACCTTTTTATTTTGTTGAAATATTTGTTGTTGATGA 244
                                                                     *  *  *  *  * 

consensus_13389#2      AGCATCCCCCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGTTTTGAAGCCGCGGCCGGA 242
consensus_13389#3      AGCATCCACCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGCTCTGAAGCCGCGGCCGGA 75
consensus_13389#0      AGCATCCACCAGCAGCGCCAGCGCCAGCGCCGCCGCCGCCGCGCTGAAGCCGCGGCCGGA 1320
consensus_13389#1      TGTTGCAGTCAGTA-TACTACCACTCTGGCGGACTACGGATTAACCCAAACTTATACAAT 303
                        *   *   *** *   * * * *    ** * *  **         *  *     *   

consensus_13389#2      CAAGGTGGATTCCGTCAGTAGACCCCCCCCGTTCAACGACACCCTCAAGACGCTGTTCGA 302
consensus_13389#3      CAAGGTGGATTCCGTCAGTAGACGCCCCACGTTCAACGACAACCTCAAGACGCTGTTCGA 135
consensus_13389#0      CAAGGTGGATTCCGTCAGTAGACGCCCCACGTTCAACGACAACCTCAAGACGCTGTTCGA 1380
consensus_13389#1      AATGGAAAAGTATGCC--TTAGTCTTCTTGGTACCTGGGCAGGTAGTGGTTGTGAGACGT 361
                        * **   * *  * *  *       *   ** *   * **       *  *     ** 

consensus_13389#2      GGAGCTCCTGATGGAGTTCAACGTGAAGGGCGC-CGCCCCGGCCAAGTTCCTCCCCGAGA 361
consensus_13389#3      GGAGCTCCTGATGGAGTTCAACGTGAAGGGCGC-CGACACGGCCAAGTTCCTCGCCGAGA 194
consensus_13389#0      GGAGCTCCTGATGGAGTTCAACGTGAAGGGCGC-CGACACGGCCAAGTTCCTCGCCGAGA 1439
consensus_13389#1      GGAATCCATCTCAGTCGACCATGCTACAAGTGCTCGTCTCCATTCAAGCTCTCATTTTGA 421
                       ***   * *    *    * * *  *   * ** ** * *     *    ***     **

consensus_13389#2      AGGTGAAGAAGAGTTTTGGTGCAACAACTACTGCCCCTGTAGGAGGCCCCCGTTATGCAC 421
consensus_13389#3      AGGTGAAGAAGAGCTCTGGTGCAACAACTACTGCGCCTGTAGGAGGCGCCCGTTATGCAG 254
consensus_13389#0      AGGTGAAGAAGAGCTCTGGTGCAACAACTACTGCGCCTGTAGGAGGCGCCCGTTATGCAG 1499
consensus_13389#1      ATGAGAAGCCCTACTTCAATGAGCCAGGATATGCATCCTACGCCAATAGTGTATCTGGAG 481
                       * * ****      *    **   **     ***  *    *           * ** * 

consensus_13389#2      CAAAAGTGGTGGATGAGTGGATGGATTATTTTGCTTTCCCTAACTGCAGAGAAGT----T 477
consensus_13389#3      CAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGT----T 310
consensus_13389#0      CAGAAGTGGTGGATGAGTGGATGGATTAGTCTGCTTTGCCTAACTGCAGAGAAGT----T 1555
consensus_13389#1      AGCGGATTGCTATGGAGTATAACGACAACACATTTCTGCACTCATGCAGGACGATGCTCT 541
                             * *     ****  *  **  *      * * *     *****     *    *

consensus_13389#2      AATATCTTTTTCTTTCTTT--------TTTATTTCGTAGTCCATAATTAGCTTATGGTTG 529
consensus_13389#3      AATATCTTTCTCTCTCTTT--------TTTATTTCGTAGTACATAATTAGCTTATGGTTG 362
consensus_13389#0      AATATCTTTCTCTCTCTTT--------TTTATTTCGTAGTACATAATTAGCTTATGGTTG 1607
consensus_13389#1      ACTCACTTCGGCGGCCTCCAGAGGTAATATTTTTGTTAATTTTTGCATTTTTTTTAGACG 601
                       * *  ***   *   **          * * ***  ** *   *   *   ** * *  *

consensus_13389#2      TTAGGACTG--GACTGGGCTGACCCTGTTGCCCAAAATGATGAATTAAA---TAGATATA 584
consensus_13389#3      CTAGGACTG--GACTGGGCTGAACCTGTTGACCAAGATGATGAATTAAA---TAGATA-- 415
consensus_13389#0      CTAGGACTG--GACTGGGCTGAACCTGTTGACCAAGATGATGAATTAAA---TAGATATA 1662
consensus_13389#1      GAGGGAGTACTGATTATGGTTAGCACGCAGAACATAGAGATTGATGGAGGGTTAAAGGTT 661
                          *** *   ** *  * * * *  *  *  **    ***  **  *    ** *    

consensus_13389#2      TCCCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGA------------- 631
consensus_13389#3      --------AAAAAAAAAA------------------------------------------ 425
consensus_13389#0      TGCCTATCCATCTCAAGGCTCTTAAGACATCAAAAAA----------------------- 1699
consensus_13389#1      ATTTTTTCTTGAAAATAATGATTATAGGTGGAGGATGAAACGGAGAAGTTTGCTGAATAA 721
                                     *                                             

consensus_13389#2      ------------------------------------------------------------
consensus_13389#3      ------------------------------------------------------------
consensus_13389#0      ------------------------------------------------------------
consensus_13389#1      ACACACATGATTTGATTTGACTATAGCTTGGTGCTGGATTATGTTACCAACCCTACTTCC 781
                                                                                   

consensus_13389#2      ----------------
consensus_13389#3      ----------------
consensus_13389#0      ----------------
consensus_13389#1      AATTNTTTACATCTCA 797