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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 548 fasta sequence
[TGGACTGAAGGAGTAGAAAATGCTCTCCAGTTTCCACCGGCCTACCTAGATCGGGAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC-GTTAGGCTAGTTAC-TGCTAGGGATA-ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF276691 [TGGACTGAAGGAGTAGAAAATGCTCTCCAGTTTCCACCGGCCTACCTAGATCGGGAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTG GATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCA CCAGTTGGTGCCAAAAAAAAAAAA ]
[+] EMBL AK119252 [ AGTTTCCACCGGCCTACCTAGATCGGGAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAgt ]
[+] EMBL AK063903 [ AGTTTCCACCGGCCTACCTAGATCGGGAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAgt ]
[+] EMBL CF326498 [ CTAGATCGGGAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAAAA ]
[+] EMBL CA998144 [ GAGAATGGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTCTGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTTAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTAC ]
[-] EMBL CF337579 [ GGTGCCCGTTCCAGGCAGTGATTTTCCAGTTGCTCCGGCCGCCAAGTCTCAAGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTTTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAACCCGTTTTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCCCCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCGGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAA ]
[-] EMBL CF276692 [ AAGTTTCAAAAAGCCTTTCCAGTTGTTCCGGTGATCGATCCTAGCAAAAAGGAGGGTATGGGTTTTGGGCATCCCCTTCCCGGGGGTAAAAATTAAATACCCTGGGCACAGGGACGTGTTAAAACCGTTTTCCTACATCGAATGTCCGGAACTCCCTTACGTGTACTGTGCCCCGTGAAATTGAAATGTTGTTTCAGATAATTTCAGACCCTATGATCAGGGAATAAATCCCCCCTGGG GTTAGGCTAGTTAC TGTTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTTTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA]
[+] EMBL BE230446 [ CTTCCCGGGGGTAAAGATTAAAGGCACTGGGCACAGGGACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGCACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCACACACTATGATCAGGGAATAAATCCCCACTGCCTGTTAAGCTATTTACGCGCTAtg ]
[+] EMBL CF308000 [ GACGTGTTAAAACCGTTCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTATTTATATATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU071059 [ TACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AT003552 [ AATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTNANATTGTNATGTTGTTTCAGATAATTTCAGNCACTATGATCAGGGAATAAATCCCCACTGGC GTTAGGCTAGTTAC TGCTAGGGATA ATGCAGATCAGGCTGTGCAATTGTANCCNATTGTCTTGTATCAATAAAGTGCAGCCAGTTGGTGCCAAAAAAA ]
consensusID : consensus_13406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence
[CGAGTTCTACATTTTCYTGCAAATATATGGAGTACATGTGTATTGCTGCTCTTGGTCTATTTTTGTTATTGATTTCTGCTAGTCAGTAGTTCACCACTACATGCTTATGTGATGCAGTTCCGGTGMTCGMTCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGSACGTGTTAAAACCGTTCTCCTACATCGWATSTCCGGMACTSCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGMTCAGGGAATAAATCCCCACTGGCGTTAGGCTAGTTACTGCTAGGGATAATGCAGMTCAGGCTGTGCAATTRKAGACAATTGTCTTGTATCAATAGAGYGCAGCCAGTTGGYGCCAAAAAAAAAAA]
[+] EMBL BE229582 [CGAGTTCTACATTTTCYTGCAAATATATGGAGTACATGTGTATTGCTGCTCTTGGTCTATTTTTGTTATTGATTTCTGCTAGTCAGTAGTTCACCACTACATGCTTATGTGATGCAGTTCCGGTGMTCGMTCCTAGCAAAGAGGAGCGTATGGGTTCTGGGCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGSACGTGTTAAAACCGTTCTCCTACATCGWATSTCCGGMACTSCCTTACGTGTACTGTGCACCGTGAGATTGTGATGTTGTTTCAGATAATTTCAGACACTATGMTCAGGGAATAAATCCCCACTGGCGTTAGGCTAGTTACTGCTAGGGATAATGCAGMTCAGGCTGTGCAATTRKAGACAATTGTCTTGTATCAATAGAGYGCAGCCAGTTGGYGCCAAAAAAAAAAA]
consensusID : consensus_13406#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence
[GAGTAAAAATTGGGCACAGGGAGGTGTTAAACCCGTTTTCTTACATGAAATGTCGGGAACTCCCTTAGGTGTATTGTGCCCCGTAAAATTGTAATGTTGTTTCAAATAATTTCAGCCCTTATGATCAGGGAATAAATCCCCACGGGCGTTAGGTTAGTTACTGTTAGGAATAATGCAGATCAGGTTGTGCAATTGTAGACAATTGTTTTGTATCAATAAAGTGCACCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF307999 [GAGTAAAAATTGGGCACAGGGAGGTGTTAAACCCGTTTTCTTACATGAAATGTCGGGAACTCCCTTAGGTGTATTGTGCCCCGTAAAATTGTAATGTTGTTTCAAATAATTTCAGCCCTTATGATCAGGGAATAAATCCCCACGGGCGTTAGGTTAGTTACTGTTAGGAATAATGCAGATCAGGTTGTGCAATTGTAGACAATTGTTTTGTATCAATAAAGTGCACCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13406#0 TGGACTGAAGGAGTAGAAAATGCTCTCCAGTTTCCACCGGCCTACCTAGATCGGGAGAAT 60
consensus_13406#2 ------------------------------------------------------------
consensus_13406#1 ------------------------------------------------------------
consensus_13406#0 GGCTGACAGCTCCGCCGCCTCCCCCATTCCGGTGGCCTATTCATCCGGTGATCCTCCGTC 120
consensus_13406#2 ------------------------------------------------------------
consensus_13406#1 ---------------CGAGTTCTACATTTTCYTG---CAAATATATGGAGTACATGTGTA 42
consensus_13406#0 TGCGACGCCGGTGCCCGTTCCAGGCAGTGATCTTCCAGCTGCTCCGGCCGCCAAGTCTCA 180
consensus_13406#2 ------------------------------------------------------------
consensus_13406#1 TTGCTGCTCTTGGTCTATTTTTGTTATTGAT--TTCTGCTAGTCAGTAGTTCACCACTAC 100
consensus_13406#0 AGAAGCCTCTCCAGCTGTTCCGGTGATCGATCCTAGCAAAGAGGAGCGTATGGGTTCTGG 240
consensus_13406#2 ------------------------------------------------------------
consensus_13406#1 ATGCTTATGTGATGCAGTTCCGGTGMTCGMTCCTAGCAAAGAGGAGCGTATGGGTTCTGG 160
consensus_13406#0 GCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGGACGTGTTAAAACCGT 300
consensus_13406#2 ----------------------GAGTAAAAAT--TGGGCACAGGGAGGTGTTAAACCCGT 36
consensus_13406#1 GCATCCACTTCCCGGGGGTAAAGATTAAATACACTGGGCACAGGSACGTGTTAAAACCGT 220
** **** * ********** * ******** ****
consensus_13406#0 TCTCCTACATCGAATGTCCGGAACTGCCTTACGTGTACTGTGCACCGTGAGATTGTGATG 360
consensus_13406#2 TTTCTTACATGAAATGTCGGGAACTCCCTTAGGTGTATTGTGCCCCGTAAAATTGTAATG 96
consensus_13406#1 TCTCCTACATCGWATSTCCGGMACTSCCTTACGTGTACTGTGCACCGTGAGATTGTGATG 280
* ** ***** ** ** ** *** ***** ***** ***** **** * ***** ***
consensus_13406#0 TTGTTTCAGATAATTTCAGACACTATGATCAGGGAATAAATCCCCACTGGCGTTAGGCTA 420
consensus_13406#2 TTGTTTCAAATAATTTCAGCCCTTATGATCAGGGAATAAATCCCCACGGGCGTTAGGTTA 156
consensus_13406#1 TTGTTTCAGATAATTTCAGACACTATGMTCAGGGAATAAATCCCCACTGGCGTTAGGCTA 340
******** ********** * **** ******************* ********* **
consensus_13406#0 GTTACTGCTAGGGATAATGCAGATCAGGCTGTGCAATTGTAGACAATTGTCTTGTATCAA 480
consensus_13406#2 GTTACTGTTAGGAATAATGCAGATCAGGTTGTGCAATTGTAGACAATTGTTTTGTATCAA 216
consensus_13406#1 GTTACTGCTAGGGATAATGCAGMTCAGGCTGTGCAATTRKAGACAATTGTCTTGTATCAA 400
******* **** ********* ***** ********* ********** *********
consensus_13406#0 TAAAGTGCAGCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 540
consensus_13406#2 TAAAGTGCACCCAGTTGGTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 276
consensus_13406#1 TAGAGYGCAGCCAGTTGGYGCCAAAAAAAAAAA--------------------------- 433
** ** *** ******** **************
consensus_13406#0 AAAAAAAA 548
consensus_13406#2 AAAAAA-- 282
consensus_13406#1 --------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||