cluster # 13408

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Oryza sativa
cluster # 13408 cluster # 13408 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13408#0 length = 1888 sequences # 11

consensus_13408#1 length = 519 sequences # 1
consensus_13408#2 length = 441 sequences # 1

consensusID : consensus_13408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1888
fasta sequence

                              [CAGCCATTGCCGTCGTCTACCTCTCCCTACTGCTGCTGCTGCTGCATGGCGCGGCGCCGGCAGTTCTTGGCTACACGCG-AGGGGATTTCCCGGAGGATTTCGTCTTCGGATCCGCCACCTCGTCGTACCAGTATGAGGGTGGTTTTGATGAGGATGGTAGGAGCCCAAGCAACTGGGACATCTTCACTCATCAAGGGAAAATGCCGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAGATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCCATCTCCTGGTCGAGGATTATTCCAAATGGGAGGGGTGATGTCAATCCAAAAGGGCTACAATACTACAATGACATCATAGATGGGCTAGTGAAAAATGGGATTCAAGTCCATATCATGCTTTATCAGTTGGACCTACCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAGGGTTGCACACTGGATTACAATTGATGAACCTAATGTTGCTTCAATTGGGTCTTATGATTCCGGACAATTGGCCCCTGGGCGTTGCTCTGATCCTTTTGGAATAAGAAAATGTACAGTAGGGAACTCATCTGTGGAGCCATATATAGCAGTTCATAACATGTTACTGGCACATGCATCAGTCACAAAACTGTACAGAGAAAAATACCAAGTCG-CAGGAAAAGGAATTATCGGCATAAGTGTTTACACATTTT-GGGCTTATCCATTAACAAATTCTACTGTCGATTTAGAAGCAACAAAAAGATGTCAGGACTTTATTGTCCACTGGGTACTAAGACCCTTGGTATTCGGTGATTACCCACAAGTAATGAAGAACATTGTC-GGTTCTCGCCTTCCATCCTTCACAAAAGCCCAATCTGAAGATGTCAAGGGTTCTCTAGATTTCATTGGAATGAATCACTACTACTCTCTCTATGTGAATGATCGTCCTTTGGGTAAGGGCACACGCGACTTTGTAGCGGATATGTCAATTTACTACAGAGGTTCCAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACCGCGTCGACTTCGCCGACGAGTCGCGGCCGCGGCAGGCGAGGCTCTCCGCTCGCTGGTACTCCGGCTTCCTCAAGAACAGGGAGCTGGATGTTGATCAGAGTGAACTCGCCATGGCAGCAGCAGAGTCACGAGCTCAGCAATGAGTTGCATACACCTGATTTGGCAGTAACATTATAGCAAGAGTTAAAATTCTTGAAAGACATTGTAGCAAGAGTTAAGCAGAGAGGAAGTCACCTGGTCTGGCTCTCTGTCACACATATATTTACTCAGGACTTGCTCCTGCACACGAAATACAGATTATGTGGTATAAAA-CAATGTCATCAAATATTATGAGATTTTTTTCGTAACCATCGTTTGGTATCTATACTCTATAGTACAATTTTAATAGATTCCAATGGTGGTGGTGAGTGATGAATTAGCCACCCACAACCACCAACTCCCTGATAAGTGGGGTCCTTGTTGTCAGGGTGTATGTGACTTCCAAATTAACATATGA]

[+] EMBL AK119221             [CAGCCATTGCCGTCGTCTACCTCTCCCTACTGCTGCTGCTGCTGCATTGCGCGGCGCCGGCAGTTCTTGGCTACACGCG AGGGGATTTCCCGGAGGATTTCGTCTTCGGATCCGCCACCTCGTCGTACCAGTATGAGGGTGGTTTTGATGAGGATGGTAGGAGCCCAAGCAACTGGGACATCTTCACTCATCAAGGGAAAATGCCGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCCATCTCCTGGTCGAGGATTATTCCAAATGGGAGGGGTGATGTCAATCCAAAAGGGCTACAATACTACAATGACATCATAGATGGGCTAGTGAAAAATGGGATTCAGGTCCATATCATGCTTTATCAGTTGGACCTACCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTGGAGGATCTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAGGGTTGCACACTGGATTACAATTGATGAACCTAATGTTGCTTCAATTGGGTCTTATGATTCCGGACAATTGGCCCCTGGGCGTTGCTCTGATCCTTTTGGAATAAGAAAATGTACAGTAGGGAACTCATCTGTGGAGCCATATATAGCAGTTCATAACATGTTACTGGCACATGCATCAGTCACAAAACTGTACAGAGAAAAATACCAAGTCG CAGGAAAAGGAATTATCGGCATAAGTGTTTACACATTTT GGGCTTATCCATTAACAAATTCTACTGTCGATTTAGAAGCAACAAAAAGATGTCAGGACTTTATTGTCCACTGGGTACTAAGACCCTTGGTATTCGGTGATTACCCACAAGTAATGAAGAACATTGTC GGTTCTCGCCTTCCATCCTTCACAAAAGCCCAATCTGAAGATGTCAAGGGTTCTCTAGATTTCATTGGAATGAATCACTACTACTCTCTCTATGTGAATGATCGTCCTTTGGGTAAGGGCACACGCGACTTTGTAGCGGATATATCAATTTACTACAGAGGTTCCAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACCGCGTCGACTTCGCCGACGAGTCGCGGCCGCGGCAGGCGAGGCTCTCCGCTCGCTGGTACTCCGGCTTCCTCAAGAACAGGGAGATGGATGTTGATCAGAGTGAGCTCGCCATGGCAGCAGCAGAGTCACGAGCTCAGCAATGAGTTGCATACACCTGATTTGGCAGTAACATTATAGCAAGAGTTAAAATTCTTGAAAGACATTGTAGCAAGAGTTAAGCAGAGAGGAAGTCACCTGGTCTGGCTCTCTGTCACACATATATTTACTCAGGACTTGCTCCTGCACACGAAATACAGATTATGTGGTATAAAA CAATGTCATCAAATATTATGAGATTTT                                                                                                                                                             ]
[+] EMBL AK070499             [ AGCCATTGCCGTCGTCTACCTCTCCCTACTGCTGCTGCTGCTGCATGGCGCGGCGCCGGCAGTTCTTGGCTACACGCG AGGGGATTTCCCGGAGGATTTCGTCTTCGGATCCGCCACCTCGTCGTACCAGTATGAGGGTGGTTTTGATGAGGATGGTAGGAGCCCAAGCAACTGGGACATCTTCACTCATCAAGGGAAAATGCCGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAGATGATTTGAAGCTGATGGTTGACACCAACCTAGAGGCTTATAGATTATCCATCTCCTGGTCGAGGATTATTCCAAATGGGAGGGGTGATGTCAATCCAAAAGGGCTACAATACTACAATGACATCATAGATGGGCTAGTGAAAAATGGGATTCAAGTCCATATCATGCTTTATCAGTTGGACCTACCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAGGGTTGCACACTGGATTACAATTGATGAACCTAATGTTGCTTCAATTGGGTCTTATGATTCCGGACAATTGGCCCCTGGGCGTTGCTCTGATCCTTTTGGAATAAGAAAATGTACAGTAGGGAACTCATCTGTGGAGCCATATATAGCAGTTCATAACATGTTACTGGCACATGCATCAGTCACAAAACTGTACAGAGAAAAATACCAAGTCG CAGGAAAAGGAATTATCGGCATAAGTGTTTACACATTTT GGGCTTATCCATTAACAAATTCTACTGTCGATTTAGAAGCAACAAAAAGATGTCAGGACTTTATTGTCCACTGGGTACTAAGACCCTTGGTATTCGGTGATTACCCACAAGTAATGAAGAACATTGTC GGTTCTCGCCTTCCATCCTTCACAAAAGCCCAATCTGAAGATGTCAAGGGTTCTCTAGATTTCATTGGAATGAATCACTACTACTCTCTCTATGTGAATGATCGTCCTTTGGGTAAGGGCACACGCGACTTTGTAGCGGATATATCAATTTACTACAGAGGTTCCAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGGTTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACCGCGTCGACTTCGCCGACGAGTCGCGGCCGCGGCAGGCGAGGCTCTCCGCTCGCTGGTACTCCGGCTTCCTCAAGAACAGGGAGATGGATGTTGATCAGAGTGAGCTCGCCATGGCAGCAGCAGAGTCACGAGCTCAGCAATGAGTTGCATACACCTGATTTGGCAGTAACATTATAGCAAGAGTTAAAATTCTTGAAAGACATTGTAGCAAGAGTTAAGCAGAGAGGAAGTCACCTGGTCTGGCTCTCTGTCACACATATATTTACTCAGGACTTGCTCCTGCACACGAAATACAGATTATGTGGTATAAAA CAATGTCATCAAATATTATGAGATTTTTTTCGTAACCATCGTTTGGTATCTATACTCTATAGTACAATTTTAATAGATTCCAATGGTGGTGGTGAGTGATGAATTAGCCACCCACAACCACCAACTCCCTGATAAGTGGGGTCCTTGTTGTCAGGGTGTATGTGACTTCCAAATTAACATATGA]
[+] EMBL CB624021             [           GTCGTCCTCCTCTCCCTACTGCTGCTGCTGCTGCATGGCGCGGCGCCTGCAGTTCTTGGCTACACGCG AGGGGATTTCCCGGAGGATTTCGTCTTCGGATCCGCCACCTCGTCGTACCAGTATGAGGGTGGTTTTGATGAGGATGGTAGGAGCCCAAGCAACTGGGACATCTTCACTCATCAAGGGAAAATGCCGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAGATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCCATCTCCTGGTCGAGGATTATTCCAAATGGGAGGGGTGATGTCAATCCAAAAGGGCTACAATACTACAATGACATCATAGATGGGCTAGTGAAAAATGGGATTCAAGTCCATATCATGCTTTATCAGTTGGACCTACCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAGGGTTGCACACTGGATTACAATTGATGAACCTAATGTTGCTTCAATTGGGTCTTATGATTCCGGACAATTGGCCCCTGGGCGTTGCTCTGATCCTTTTGGAATAAGAAAATGTACAGTAGGGAACTCATCTGTGGAGCCATATATAGCAGTTCATAACATGTTACTGGCACATGCATCAGTCACAAAACTGTACAGAGAAAAATACCAAGTCG CAGGAAAAGGAATTATCGGCATAAGTGTTTACACATTTTGGGGCTTATCCATTAACAAATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB617801             [           GTCGTCTACCTCTCCCTACTGCTGCTGCTGCTGCATGGCGCGGCGCCTGCAGTTCTTGGCTACACGCG AGGGGATTTCCCGGAGGATTTCGTCTTCGGATCCGCCACCTCGTCGTACCAGTATGAGGGTGGTTTTGATGAGGATGGTAGGAGCCCAAGCAACTGGGACATCTTCACTCATCAAGGGAAAATGCCGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAGATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCCATCTCCTGGTCGAGGATTATTCCAAATGGGAGGGGTGATGTCAATCCAAAAGGGCTACAATACTACAATGACATCATAGATGGGCTAGTGAAAAATGGGATTCAAGTCCATATCATGCTTTATCAGTTGGACCTACCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAGGGTTGCACACTGGATTACAATTGATGAACCTAATGTTGCTTCAATTGGGTCTTATGATTCCGGACAATTGGCCCCTGGGCGTTGCTCTGATCCTTTTGGAATAAGAAAATGTACAGTAGGGAACTCATCTGTGGAGCCATATATAGCAGTTCATAACATGTTACTGGCACATGCATCAGTCACAAAACTGTACAGAGAAAAATACCAAGTCG CAGGAAAAGGAATTATCGGCATAAGTGTTTACACATTTT GGGGCTATCCATTAACAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB619541             [                                                            CAGNTCTTGGCTACACGCG AGGGGATTTCCCGGAGGATTTCGTCTTCGGATCCGCCACCTCGTCGTACCAGTATGAGGGTGGTTTTGATGAGGATGGTAGGAGCCCAAGCAACTGGGACATCTTCACTCATCAAGGGAAAATGCCGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAGATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGATTATCCATCTCCTGGTCGAGGATTATTCCAAATGGGAGGGGTGATGTCAATCCAAAAGGGCTACAATACTACAATGACATCATAGATGGGCTAGTGAAAAATGGGATTCAAGTCCATATCATGCTTTATCAGTTGGACCTACCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAGGGTTGCACACTGGATTACAATTGATGAACCTAATGTTGCTTCAATTGGGTCTTATGATTCCGGACAATTGGCCCCTGGGCGTTGCTCTGATCCTTTTGGAATAAGAAAATGTACAGTAGGGAACTCATCTGTGGAGCCATATATAGCAGTTCATAACATGTTACTGGCACATGCATCAGTCACAAAACTGTACAGAGAAAAATACCAAGTCGCCAGGAAAAGGAATTATCGGCATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB625634             [                                                                  taGGCTACACGCGCACGGGATTTCCCGGAGGATTTCGTCTTCGGATCCGCCACCTCGTCGTACCAGTATGAGGGTGGTTTTGATGAGGATGGTAGGAGCCCAAGCAACTGGGACATCTTCACTCATCAAGGGAAAATGCCGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGTACCACAAGTACAAAGATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATACATTATCCATCTCCTGGTCGAGGATTATTCCAAATGGGAGGGGTGATGTCAATCCAAAAGGGCTACTATACTACAATGACATCATAGATGGGCTAGTGAAAAATGGGATTCAAGTCCATATCATGCTTTATCAGTTGGACCTACCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTCCGAGAATTTTGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACAGGGTTGCACACTGGATTACAATTGATGAACCTAATGTTGCTTCAATTGGGTCTTATGATTCCGGACAATTGGCCCCTGGGCGTTGCTCTGATCCTTTTGGAATAAGAAAATGTACAGTAGGGAACTCATCTGTGGAGCCATATATAGCAGTTCATAACATGTTACTGGCACATGCATCACTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB619542             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AACA TGTCGGGTTCTCGCCTTCCATCCTTCACAAAAGCCCAATCTGAAGATGTCAAGGGTTCTCTAGATTTCATTGGAATGAATCACTACTACTCTCTCTATGTGAATGATCGTCCTTTGGGTAAGGGCACACGCGACTTTGTAGCGGATATGTCAATTTACTACAGAGGTTCCAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACCGCGTCGACTTCGCCGACGAGTCGCGGCCGCGGCAGGCGAGGCTCTCCGCTCGCTGGTACTCCGGCTTCCTCAAGAACAGGGAGCTGGATGTTGATCAGAGTGAACTCGCCATGGCAGCAGCAGAGTCACGAGCTCAGCAATGAGTTGCATACACCTGATTTGGCAGTAACATTATAGCAAGAGTTAAAATTCTTGAAAGACATTGTAGCAAGAGTTAAGCAGAGAGGAAGTCACCTGGTCTGGCTCTCTGTCACACATATATTTACTCAGGACTTGCTCCTGTACACGAAATACAGATTATGTGGTATAAAA CAATGTCATCAAATATTATGAGATTTTTATC                                                                                                                                                         ]
[-] EMBL CB617802             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCAATCTGAAGATGTCAAGGGTTCTCTAGATTTCATTGGAATGAATCACTACTACTCTCTCTATGTGAATGATCGTCCTTTGGGTAAGGGCACACGCGACTTTGTAGCGGATATGTCAATTTACTACAGAGGTTCCAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACCGCGTCGACTTCGCCGACGAGTCGCGGCCGCGGCAGGCGAGGCTCTCCGCTCGCTGGTACTCCGGCTTCCTCAAGAACAGGGAGCTGGATGTTGATCAGAGTGAACTCGCCATGGCAGCAGCAGAGTCACGAGCTCAGCAATGAGTTGCATACACCTGATTTGGCAGTAACATTATAGCAAGAGTTAAAATTCTTGAAAGACATTGTAGCAAGAGTTAAGCAGAGAGGAAGTCACCTGGTCTGGCTCTCTGTCACACATATATTTACTCAGGACTTGCTCCTGTACACGAAATACAGATTATGTGGTATAAAAGCAATGTCATCAAATATTATGAGAT                                                                                                                                                                ]
[-] EMBL CB624022             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGTTCTCTAGATTTCATTGGAATGAATCACTACTACTCTCTCTATGTGAATGATCGTCCTTTGGGTAAGGGCACACGCGACTTTGTAGCGGATATGTCAATTTACTACAGAGGTTCCAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACCGCGTCGACTTCGCCGACGAGTCGCGGCCGCGGCAGGCGAGGCTCTCCGCTCGCTGGTACTCCGGCTTCCTCAAGAACAGGGAGCTGGATGTTGATCAGAGTGAACTCGCCATGGCAGCAGCAGAGTCACGAGCTCAGCAATGAGTTGCATACACCTGATTTGGCAGTACCATTATAGCAAGAGTTAAAATTCTTGAAAGACATTGTAGCAAGAGTTAAGCAGAGAGGAAGTCACCTGGTCTGGCTCTCTGTCACACATATATTTACTCAGGACTTGCTCCTGTACACGAAATACAGATTATGTGGTATAAAAGCAATGTCATCAAATATTATGAGATTTTTATCG                                                                                                                                                        ]
[-] EMBL CB625635             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGGGCACACGCGACTTTGTAGCGGATATGTCAATTTACTACAGAGGTTCCAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTCCCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGCGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACCGCGTCGACTTCGCCGACGAGTCGCGGCCGCGGCAGGCGAGGCTCTCCGCTCGCTGGTACTCCGGCTTCCTCAAGAACAGGGAGCTGGATGTTGATCAGAGTGAACTCGCCATGGCAGCAGCAGAGTCACGAGCTCAGCAATGAGTTGCATACACCTGATTTGGCAGTAACATTATAGCAAGAGTTAAAATTCTTGAAAGACATTGT                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB685815             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AAATTCTTGAAAGACATTGTAGCAAGAGTTAAGCAGAGAGGAAGTCACCTGGTCTGGCTCTCTGTCACACATATATTTACTCAGGACTTGCTCCTGCACACGAAATACAGATTATGTGGTATAAAA CAATGTCATCAAATATTATGAGATTTTTTTCGTAACCATCG                                                                                                                                               ]




>consensus_13408#0
CAGCCATTGCCGTCGTCTACCTCTCCCTACTGCTGCTGCTGCTGCATGGCGCGGCGCCGG
CAGTTCTTGGCTACACGCGAGGGGATTTCCCGGAGGATTTCGTCTTCGGATCCGCCACCT
CGTCGTACCAGTATGAGGGTGGTTTTGATGAGGATGGTAGGAGCCCAAGCAACTGGGACA
TCTTCACTCATCAAGGGAAAATGCCGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGT
ACCACAAGTACAAAGATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGAT
TATCCATCTCCTGGTCGAGGATTATTCCAAATGGGAGGGGTGATGTCAATCCAAAAGGGC
TACAATACTACAATGACATCATAGATGGGCTAGTGAAAAATGGGATTCAAGTCCATATCA
TGCTTTATCAGTTGGACCTACCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTC
CGAGAATTTTGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACA
GGGTTGCACACTGGATTACAATTGATGAACCTAATGTTGCTTCAATTGGGTCTTATGATT
CCGGACAATTGGCCCCTGGGCGTTGCTCTGATCCTTTTGGAATAAGAAAATGTACAGTAG
GGAACTCATCTGTGGAGCCATATATAGCAGTTCATAACATGTTACTGGCACATGCATCAG
TCACAAAACTGTACAGAGAAAAATACCAAGTCGCAGGAAAAGGAATTATCGGCATAAGTG
TTTACACATTTTGGGCTTATCCATTAACAAATTCTACTGTCGATTTAGAAGCAACAAAAA
GATGTCAGGACTTTATTGTCCACTGGGTACTAAGACCCTTGGTATTCGGTGATTACCCAC
AAGTAATGAAGAACATTGTCGGTTCTCGCCTTCCATCCTTCACAAAAGCCCAATCTGAAG
ATGTCAAGGGTTCTCTAGATTTCATTGGAATGAATCACTACTACTCTCTCTATGTGAATG
ATCGTCCTTTGGGTAAGGGCACACGCGACTTTGTAGCGGATATGTCAATTTACTACAGAG
GTTCCAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCAC
AAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATA
TCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATT
ACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGAATGGCGCCAACGTGAAAG
GCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGT
ACGGCCTCTACCGCGTCGACTTCGCCGACGAGTCGCGGCCGCGGCAGGCGAGGCTCTCCG
CTCGCTGGTACTCCGGCTTCCTCAAGAACAGGGAGCTGGATGTTGATCAGAGTGAACTCG
CCATGGCAGCAGCAGAGTCACGAGCTCAGCAATGAGTTGCATACACCTGATTTGGCAGTA
ACATTATAGCAAGAGTTAAAATTCTTGAAAGACATTGTAGCAAGAGTTAAGCAGAGAGGA
AGTCACCTGGTCTGGCTCTCTGTCACACATATATTTACTCAGGACTTGCTCCTGCACACG
AAATACAGATTATGTGGTATAAAACAATGTCATCAAATATTATGAGATTTTTTTCGTAAC
CATCGTTTGGTATCTATACTCTATAGTACAATTTTAATAGATTCCAATGGTGGTGGTGAG
TGATGAATTAGCCACCCACAACCACCAACTCCCTGATAAGTGGGGTCCTTGTTGTCAGGG
TGTATGTGACTTCCAAATTAACATATGA

consensusID : consensus_13408#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [GTTCACTTGGAATGAATCACTACTACTCTCTCTATGTGAATGATCGTCCTTTGGGTAAGGGCACACGCGACTTTGTAGCGGATATATCATTTACTACAGAGGTAAGAACTTTTCTGTCGATGAAGGCATTATTGGCTTATTGCTGCACTGCACTTCCCCAGTCATAGGAGCAGGAATTTTTGGTACATTTGTCTAGCGGTTCCAAGACAGATCCACCACCTGGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCATCGTACGGCCTCTACCGCGTCGACTTCGCCG]

[+] EMBL BI805927             [GTTCACTTGGAATGAATCACTACTACTCTCTCTATGTGAATGATCGTCCTTTGGGTAAGGGCACACGCGACTTTGTAGCGGATATATCATTTACTACAGAGGTAAGAACTTTTCTGTCGATGAAGGCATTATTGGCTTATTGCTGCACTGCACTTCCCCAGTCATAGGAGCAGGAATTTTTGGTACATTTGTCTAGCGGTTCCAAGACAGATCCACCACCTGGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCATCGTACGGCCTCTACCGCGTCGACTTCGCCG]




>consensus_13408#1
GTTCACTTGGAATGAATCACTACTACTCTCTCTATGTGAATGATCGTCCTTTGGGTAAGG
GCACACGCGACTTTGTAGCGGATATATCATTTACTACAGAGGTAAGAACTTTTCTGTCGA
TGAAGGCATTATTGGCTTATTGCTGCACTGCACTTCCCCAGTCATAGGAGCAGGAATTTT
TGGTACATTTGTCTAGCGGTTCCAAGACAGATCCACCACCTGGCCGCTCCAACATCTATT
GGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAAC
CTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAAT
GACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGAATGGC
GCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGG
TACGGCCATCGTACGGCCTCTACCGCGTCGACTTCGCCG

consensusID : consensus_13408#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [CAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGTGAAAACATCGCCAAAAAGAGGAAACAGATCGGATAATTTTCAGGCAAATGCTTTGCAGTTTGCTCTGAAATTCTTCAGACATTTTGATCAGGAAGAACTCCTCTCTGCAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACCGCGTCGACTTCGCCGACGAGT]

[-] EMBL CF326355             [CAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGTGAAAACATCGCCAAAAAGAGGAAACAGATCGGATAATTTTCAGGCAAATGCTTTGCAGTTTGCTCTGAAATTCTTCAGACATTTTGATCAGGAAGAACTCCTCTCTGCAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACCGCGTCGACTTCGCCGACGAGT]




>consensus_13408#2
CAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCACAAGG
ATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTATATCCT
CGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGATTACCT
GAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGTGAAAACATCGCCAAAAAGAGGA
AACAGATCGGATAATTTTCAGGCAAATGCTTTGCAGTTTGCTCTGAAATTCTTCAGACAT
TTTGATCAGGAAGAACTCCTCTCTGCAGGAATGGCGCCAACGTGAAAGGCTACTTCGTGT
GGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCTCTACC
GCGTCGACTTCGCCGACGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13408#0      CAGCCATTGCCGTCGTCTACCTCTCCCTACTGCTGCTGCTGCTGCATGGCGCGGCGCCGG 60
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      CAGTTCTTGGCTACACGCGAGGGGATTTCCCGGAGGATTTCGTCTTCGGATCCGCCACCT 120
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      CGTCGTACCAGTATGAGGGTGGTTTTGATGAGGATGGTAGGAGCCCAAGCAACTGGGACA 180
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      TCTTCACTCATCAAGGGAAAATGCCGGGCAGAAGCACAGCTGATGTCGCCGCCGACGGGT 240
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      ACCACAAGTACAAAGATGATTTGAAGCTGATGGTTGACACTAACCTAGAGGCTTATAGAT 300
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      TATCCATCTCCTGGTCGAGGATTATTCCAAATGGGAGGGGTGATGTCAATCCAAAAGGGC 360
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      TACAATACTACAATGACATCATAGATGGGCTAGTGAAAAATGGGATTCAAGTCCATATCA 420
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      TGCTTTATCAGTTGGACCTACCTCAGGTTCTGGAAGACGAGTACGATGGATGGTTGAGTC 480
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      CGAGAATTTTGGAGGATTTCAAAGCATATGCAGATGTGTGCTTCAAGGAGTTTGGAGACA 540
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      GGGTTGCACACTGGATTACAATTGATGAACCTAATGTTGCTTCAATTGGGTCTTATGATT 600
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      CCGGACAATTGGCCCCTGGGCGTTGCTCTGATCCTTTTGGAATAAGAAAATGTACAGTAG 660
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      GGAACTCATCTGTGGAGCCATATATAGCAGTTCATAACATGTTACTGGCACATGCATCAG 720
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      TCACAAAACTGTACAGAGAAAAATACCAAGTCGCAGGAAAAGGAATTATCGGCATAAGTG 780
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      TTTACACATTTTGGGCTTATCCATTAACAAATTCTACTGTCGATTTAGAAGCAACAAAAA 840
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      GATGTCAGGACTTTATTGTCCACTGGGTACTAAGACCCTTGGTATTCGG-TGATTACCCA 899
consensus_13408#1      ----------GTTCACTTGGAATGAATCACTACTACTCTCTCTATGTGAATGATCGTCCT 50
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      CAAGTAATGAAGAACATTGTCGGTTCTCGCCTTCCATCCTTCACAAAAGCCCAATCTGAA 959
consensus_13408#1      T---TGGGTAAGGGCACACGCGACT-TTGTAGCGGATATATCATTTA--------CTACA 98
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      GATGTCAAGGGTTCTCTAGATTTCATTGGAATGAATCACTACTACTCTCTCTATGTGAAT 1019
consensus_13408#1      GAGGTAAGAACTTTTCTG--------TCGATGAAGGCATTATTGGCTTATTGCTGCACTG 150
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      GATCGTCCTTTGGGTAAGGGCACACGCGACTTTGTAGCGGATATGTCAATTTACTACAGA 1079
consensus_13408#1      CACTTCCCCAGTCATAGGAGCAG----GAATTTTTGGTACATTTGTC---------TAGC 197
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      GGTTCCAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCA 1139
consensus_13408#1      GGTTCCAAGACAGATCCACCACCTGG-----CCGCTCCAACATCTATTGGACCTGACCCA 252
consensus_13408#2      -----CAAGACAGATCCACCACCTGGTAAGGCCGCTCCAACATCTATTGGACCTGACCCA 55
                            *********************     *****************************

consensus_13408#0      CAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTAT 1199
consensus_13408#1      CAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTAT 312
consensus_13408#2      CAAGGATTGAGATTGATGGTGCAGTACCTACAAGAAACCTATGGGAACCTTCCCATTTAT 115
                       ************************************************************

consensus_13408#0      ATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGAT 1259
consensus_13408#1      ATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGAT 372
consensus_13408#2      ATCCTCGAGAATGGTTATGGATCAAGCAATGACACTGTCCATGACAATGACAGGGTTGAT 175
                       ************************************************************

consensus_13408#0      TACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGG----AATGGCGCCAACGT 1315
consensus_13408#1      TACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGG----AATGGCGCCAACGT 428
consensus_13408#2      TACCTGAAGAGCTATATAGGGAGTATCCTGACTGCACTAAGGTGAAAACATCGCCAAAAA 235
                       ******************************************    **   ******   

consensus_13408#0      GAAAGGCTACTTCGTGTGGTCATTCG-TGGACGTGTTCGAGTACCTGACGGGGTACGGCC 1374
consensus_13408#1      GAAAGGCTACTTCGTGTGGTCATTCG-TGGACGTGTTCGAGTACCTGACGGGGTACGGCC 487
consensus_13408#2      GAGGAAACAGATCGGATAATTTTCAGGCAAATGCTTTGCAGTTTGCTCTGAAATTCTTCA 295
                       **      *  ***  *  *  *  *    * *  **  ***       *   * *  * 

consensus_13408#0      AATCGTACGGCCTCTACCGCGTCGACTTCGCCGACGAGTCGCGGCCGCGGCAGGCGAGGC 1434
consensus_13408#1      A-TCGTACGGCCTCTACCGCGTCGACTTCGCCG--------------------------- 519
consensus_13408#2      GACATTTTGATCAGGAAGAACTCCTCTCTGCAGGAATGGCGCCAACGTGAAAGGCTACTT 355
                            *  *  *   *     **  **  ** *                           

consensus_13408#0      TCTCCGCTCGCTGGTACTCCGGCTTCCTCAAGAACAGGGAGCTGGATGTTGATCAGAGTG 1494
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      CGTGTGGTCATTCGTGGACGTGTTCGAGTACCTGACGGGGTACGGCCAATCGTACGGCCT 415
                                                                                   

consensus_13408#0      AACTCGCCATGGCAGCAGCAGAGTCACGAGCTCAGCAATGAGTTGCATACACCTGATTTG 1554
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      CTACCGCGTCGACTTCGCCGACGAGT---------------------------------- 441
                                                                                   

consensus_13408#0      GCAGTAACATTATAGCAAGAGTTAAAATTCTTGAAAGACATTGTAGCAAGAGTTAAGCAG 1614
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      AGAGGAAGTCACCTGGTCTGGCTCTCTGTCACACATATATTTACTCAGGACTTGCTCCTG 1674
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      CACACGAAATACAGATTATGTGGTATAAAACAATGTCATCAAATATTATGAGATTTTTTT 1734
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      CGTAACCATCGTTTGGTATCTATACTCTATAGTACAATTTTAATAGATTCCAATGGTGGT 1794
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      GGTGAGTGATGAATTAGCCACCCACAACCACCAACTCCCTGATAAGTGGGGTCCTTGTTG 1854
consensus_13408#1      ------------------------------------------------------------
consensus_13408#2      ------------------------------------------------------------
                                                                                   

consensus_13408#0      TCAGGGTGTATGTGACTTCCAAATTAACATATGA 1888
consensus_13408#1      ----------------------------------
consensus_13408#2      ----------------------------------