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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1073 fasta sequence
[AGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCGACATCTCCGACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTGACGAGTCGTTCGCGGCGGCCAAGGCGCCGGCGCCGG-GGAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGCCCGCGTCTGGCTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACGACGTCGCGGCGCGCGACATCCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCCGCCGCGCCACCGCCGCCCAAGAAGCGACGCAAAGCCGCCGCCGCGGCGAACCACCACCACCACCACCACCAGCAGGAGAGCTCAGGCTCCTCGTCGGCGTCGTCGCTGCCTCCCACCCCGCCGCCGGCCGCCGAGCACCAGCTCCGCGAGTGCATGTCCGGGCTGGAGGCGTTCTTGGGCCTC---GAGGAGGAGGAGGACGACGGCGGCGCCGGTGAGCCATGGGACGCCGTCGACATGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATAAAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGACTTCTTGGGCAACATGAGCAATGCATTTCGACTTCCACTTTAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK100184 [AGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCGACATCTCCGACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTGACGAGTCGTTCGCGGCGGCCAAGGCGCCGGCGCCGG GGAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGCCCGCGTCTGGCTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACGACGTCGCGGCGCGCGACATCCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCCGCCGCGCCACCGCCGCCCAAGAAGCGACGCAAAGCCGCCGCCGCGGCGAACCACCACCACCACCACCACCAGCAGGAGAGCTCAGGCTCCTCGTCGGCGTCGTCGCTGCCTCCCACCCCGCCGCCGGCCGCCGAGCACCAGCTCCGCGAGTGCATGTCCGGGCTGGAGGCGTTCTTGGGCCTC GAGGAGGAGGAGGACGACGGCGGCGCCGGTGAGCCATGGGACGCCGTCGACATGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATAAAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGACTTCTTGGGCAACATGAGCAATGCATTTCGACTTCCA ]
[+] EMBL C28151 [ TAGTAGCAAGACAATGTNTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCGACATCTCCGACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTGACGAGTCGTTCGCGGCGGCCAAGGNGNCGGCGCCGG GGAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGC ]
[+] EMBL C26997 [ TAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCNACATCTCCGACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTNACGAGTCGTTCGCGGCGGCCAAGGCGCCGGCGCCGGTGNAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGNCGGAGATCCGCGACCCGAGGAAGGGCGCCCGTTTTTGGTTCGG AACTACGNCACCGCCG ]
[+] EMBL AU091802 [ AGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCNACATCTCCNACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTNACGAGTCGTTCGCGGCGGCCAAGGNGCCGGCGCCGG GAAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGGNGGAGATCCGCNACCCGAGGAAGGNCGCCCGCTTTTGGTTCGGNACCT ]
[+] EMBL OS0429A [ AGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTCCGACATCTCCGACAACGCCGTCCTCTCCGCTGCCGGTGCCGGTGACGAGTCGTTCGCGGCGGCCAAGGCGCCGGCGCCGG GGAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGC ]
[+] EMBL AK111676 [ gtcttctttGTGCAGGTGACGAGTCGTTCGCGGCGGCCAAGGCGCCGGCGCCGG GGAGGAAGACGGCGTACCGCGGCATCCGGCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGCCCGCGTCTGGCTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACGACGTCGCGGCGCGCGACATCCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCCGCCGCGCCACCGCCGCCCAAGAAGCGACGCAAAGCCGCCGCCGCGGCGAACCACCACCACCACCACCACCAGCAGGAGAGCTCAGGCTCCTCGTCGGCGTCGTCGCTGCCTCCCACCCCGCCGCCGGCCGCCGAGCACCAGCTCCGCGAGTGCATGTCCGGGCT AGGCGTTCTTGGGCCTC GAGGAGGAGGAGGACGACGGCGGCGCCGGTGAGCCATGGGACGCCGTCGACATGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATAAAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGACTTCTTGGGCAACATGAGCAATGCAT ]
[+] EMBL CA997980 [ ACTTCCCCCCGACCATCGGCGCCGCCGCCGCGCCACCGCCGCCCAAGAAGCGACGCAAAGCCGCCGCCGCGGCGAACCACCACCACCACCACCACCAGCAGGAGAGCTCAGGCTCCTCGTCGGCGTCGTCGCTGCCTCCCACCCCGCCGCCGGCCGCCGAGCACCAGCTCCGCGAGTGCATGTCCGGGCTGGAGGCGTTCTTGGGCCTCGAGGAGGAGGAGGAGGACGACGGCGGCGCCGGTGAGCCATGGGACGCCGTCGACATGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGT ]
[+] EMBL C97584 [ GGACGCCGTCGACATGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGNTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATAAAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGACTTCTTGGGCAACATGAGCAATGCATTTCGACTTCAA AAAAAAAAAN ]
[+] EMBL CA999389 [ TGATGCTCGAGTAGGCTCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAGCAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATAAAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGACTTCTTGGGCAACATGAGCAATGCATTTCGACTTCCACTTTAAAAAAA ]
[+] EMBL AU181839 [ TGTTAATTACTACTTNCTGNGTAGGTAAATGAAATAAAATGGGGTTGGTTAATTAGGGTGTTTTTTTGGGAATCCTTGGCTTTGCTAATTGCTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTAATCGTGGTAATTATATGGCCGTCCTCCTANAGCTAGCTAGCAGATTAGATTTNCTATATAAAGTGGTAGTANAAANATATGTCCTCCTANAGCTAACTAGTGTCTTGTAATGATTTCAGACTTNTTGGGCAACATGAGCAATGCATTTCGACTTCCCCTTTCCTTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 290 fasta sequence
[AAGTNTGTTGCTAGAAGAAAAGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCNACCCGAGGAAGGGCGCCCGCTTNTGGNTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACNACGTCGCGGCGCGCNA-AATCCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCGCCGCGCCACCGNCGNCCAAGAAG]
[+] EMBL AU062922 [AAGTNTGTTGCTAGAAGAAAAGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCNACCCGAGGAAGGGCGCCCGCTTNTGGNTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACNACGTCGCGGCGCGCNA AATCCGCGGCGCCAAGG ]
[+] EMBL C97083 [ AGTNTGTTGCTAGAAGAAAAGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTGTGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGCCCGCNTCTGGCTCGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACNACGTCGCGGCGCGCGACATTCCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCGCCGCGCCACCGNCGNCCAAGAAG]
consensusID : consensus_13413#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 106 fasta sequence
[GATAGTAGCAAGACAATGTGTGGGGTAGCGATCATCCCGACTTCGTCCCACCCACCGCCCCGCGCGCACGTACCTCCGACATCTCCGACAACACCATCCTCTCCAC]
[+] EMBL D42618 [GATAGTAGCAAGACAATGTGTGGGGTAGCGATCATCCCGACTTCGTCCCACCCACCGCCCCGCGCGCACGTACCTCCGACATCTCCGACAACACCATCCTCTCCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13413#0 --------------------AGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTG 40
consensus_13413#2 ----------------------------------------GATAGTAGCAAGACAATGTG 20
consensus_13413#1 AAGTNTGTTGCTAGAAGAAAAGCCTTGTGAGTTGGTAATTGATAGTAGCAAGACAATGTG 60
********************
consensus_13413#0 TGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCGCCCGCCGCGCCGCTGCCTC 100
consensus_13413#2 TGGGGTAGCGATCATC-CCGACTTCGTCCCACCCAC---CGCCCCGCGCGCACGTACCTC 76
consensus_13413#1 TGGGGGAGCGATCATCGCCGACTTCGTCCCGCCCGCCGGCCGTGGGGACGCTGG-GCGGC 119
***** ********** ************* *** * * *** * *
consensus_13413#0 CGACATCTCCGAC------AACGCCGTCCTCTCCGCTGCCGGTGCCGGTGACGAGTCGTT 154
consensus_13413#2 CGACATCTCCGAC------AACACCATCCTCTCCAC------------------------ 106
consensus_13413#1 GGAGATCCGCNACCCGAGGAAGGGCGCCCGCTTNTGGNTCGGCACCTACGCCACCGCCGA 179
** *** * ** ** * ** **
consensus_13413#0 CGCGGCGGCCAAGGCGCCGGCGCCGGGGAGGAAGACGGCGTACCGCGGCATCCGGCGCCG 214
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 GGAGGCCGCCC--GCGCCTACNACGTCGCGGCGCGCNAAATCCGCGGCGCCAAGGCCAAG 237
consensus_13413#0 GCCGTGGGGACGCTGGGCGGCGGAGATCCGCGACCCGAGGAAGGGCGCCCGCGTCTGGCT 274
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 CTCAACTTCCCCCCGACCATCGGCGCCGCGCCGCGCCACCGNCGNCCAAGAAG------- 290
consensus_13413#0 CGGCACCTACGCCACCGCCGAGGAGGCCGCCCGCGCCTACGACGTCGCGGCGCGCGACAT 334
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 CCGCGGCGCCAAGGCCAAGCTCAACTTCCCCCCGACCATCGGCGCCGCCGCCGCGCCACC 394
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 GCCGCCCAAGAAGCGACGCAAAGCCGCCGCCGCGGCGAACCACCACCACCACCACCACCA 454
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 GCAGGAGAGCTCAGGCTCCTCGTCGGCGTCGTCGCTGCCTCCCACCCCGCCGCCGGCCGC 514
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 CGAGCACCAGCTCCGCGAGTGCATGTCCGGGCTGGAGGCGTTCTTGGGCCTCGAGGAGGA 574
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 GGAGGACGACGGCGGCGCCGGTGAGCCATGGGACGCCGTCGACATGATGCTCGAGTAGGC 634
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 TCGCCGGGAATGGCAGCGTTGCCATGCTCATGCATCCAAGCTTATTCATGCATGCAGCAG 694
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 CAAGATATACAACTTTAGTACTACTACTATGTTAATTACTACTTACTGCGTAGGTAAATG 754
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 AAATAAAATGGGGTTGGTTAATTAGGGTGTTCTTCTGGGAATCCTTGGCTTTGCTAATTG 814
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 CTAGTACTACTATGTACTTTGGCGTTAAGCATTGCATTGCCAGGTGATGCATGTCATGTA 874
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 ATCGTGGTAATTATATGGCCGTCCTCCTAGAGCTAGCTAGCAGATTAGATTTACTATATA 934
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 AAGTGGTAGTAGAAATATATGTCCTCCTAGAGCTAACTAGTGTCTTGTAATGATTTCAGA 994
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 CTTCTTGGGCAACATGAGCAATGCATTTCGACTTCCACTTTAAAAAAAAANAAAAAAAAA 1054
consensus_13413#2 ------------------------------------------------------------
consensus_13413#1 ------------------------------------------------------------
consensus_13413#0 AAAAAAAAAAAAAAAAAAA 1073
consensus_13413#2 -------------------
consensus_13413#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||