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Oryza sativa
cluster # 13418 cluster # 13418       Sequences # 13       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13418#0 length = 1692 sequences # 3  
consensus_13418#1 length = 896 sequences # 10  

consensusID : consensus_13418#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1692
fasta sequence
                              [CGGAAGGCTTGGAAGCCCGCGTTGACTAGTGGCGGTTGGATTGGCGGCGGCGGCGGCGACTCGACGATGGGCGGCGGCATGAGGGTGGTGGTGACGGGCGCGACGGGGTACCTCGGCGGCCGCCTGTGCGCGGCGCTGGCGGCCGCCGGCCACGCCGTGCGCGCGTTCGCCCGCCGCTCCAGCGACGCCTCCGGGCTCCCGGCATCCGTCGAGCTGGCCTACGGGGACGTCACCGACGAGGGGTCCCTCGCCACCGCCTTCGACGGGTGCGACGCGGTCTTCCACGTCGCCGCCGCCGTCGAGCCGTGGCTCCCCGACCCCTCGGTTTTCACCACCGTACGCGTGCTGATTCATTTCTGATGTTTTCCTGTGGCAAGTAGAGGGTAACTATATTCATTCAAATCAAAGTGGGGAGTACTATAGAACGCTAGATGAACCTAGACATTCTGCCTATTGTGCGATGCTGTTTAGGGTCTTTGAAAATTATGGCTCCAAGTCCAACAATAATTGATTTTCCGTTTGCTGTTCTGTTCATGAAACTAAAATGCATGCAAATTCGGTTTGGCTTGGTGTAAGAAATGGCACTTGAGCATGCGCGTTCTGTGCTATGATTACAGGTCAATGTGAGAGGACTCGAGAATGTGTTGAAGGCTGCTAAGAGAACACCGACCGTAAAGAAGATAATTTACACATCTTCATTCTTTGCAATTGGCCCAACTGATGGTTATGTTGCAGATGAGACACAGAGACATCAAGAGAAAACATTTTGCTCAGAGTACGAGAAATCCAAGGTTCTTGCAGACCGAATTGCATTGCAGGCAGCAGCAGAAGGGGTGCCAATCACCATTCTCTACCCTGGAGTTATCTACGGGCCTGGAAAACTAACTACTGGAAATATTGTTTCCCGTATTGTGAGAGAATTTCTTACTCATGGCTATGTCAAATATGTAGTTATTTATTATCGTATATTTGTTTCAATTTTAAAATATAACATTTCCTGAAAGATAGCCATGACCAGAAGAAATTAAACTGTTGTGATTCTTGCAGTTAATTGAACGGTTTAATTGGCGCCTACCTGGTTACATAGGAGATGGGTATGATAGGGAATCGTTTTGCCATGTTGACGACGTTGTTAATGGGCACATAGCAGCAATGGAGAAGGGCAGACCGGGGGAAAGATATCTCCTTACTGGAGAAAACTTATCATTCAAACAGATTTTCGATATGGCTGCTAACATTACAAATACGAAGGCACCCCTATTCCATGTACCTCTCTGGTTGATTGAAATATGGGTGGATTTCAGTTTTTATTTCTCACATCACTGGAAATCTCACACTTATCAGTTACCCTACAGTACGTGTTCTTAGACATCAATGGGCATATTCATGTGATAAAGCCAAGAGGGAGCTGGGCTACAGTCCAAGAAACTTAACTGAAGGTCTATCAGAGATGCTCTTATGGCTCAAGGATGAAAAATTGATCAAGTTTTAGCACTCACCCCTTGTGCTAACTTGTGCTGCATTCCACACCATGTAAACTGAGATCTGATTTAAACCTATTAACTGTAAGATGTACATGTTTGGTGTGGTGTTAATGTTGTATCATATCAGTAATAACTTGAGATGTAACATGGTAGTACTGGTTCCATGGAAGAAAGGAAAAACATGTTCTTCGATTGAAAAAANAAANAN]

[+] EMBL AK065264             [CGGAAGGCTTGGAAGCCCGCGTTGACTAGTGGCGGTTGGATTGGCGGCGGCGGCGGCGACTCGACGATGGGCGGCGGCATGAGGGTGGTGGTGACGGGCGCGACGGGGTACCTCGGCGGCCGCCTGTGCGCGGCGCTGGCGGCCGCCGGCCACGCCGTGCGCGCGTTCGCCCGCCGCTCCAGCGACGCCTCCGGGCTCCCGGCATCCGTCGAGCTGGCCTACGGGGACGTCACCGACGAGGGGTCCCTCGCCACCGCCTTCGACGGGTGCGACGCGGTCTTCCACGTCGCCGCCGCCGTCGAGCCGTGGCTCCCCGACCCCTCGGTTTTCACCACCGTACGCGTGCTGATTCATTTCTGATGTTTTCCTGTGGCAAGTAGAGGGTAACTATATTCATTCAAATCAAAGTGGGGAGTACTATAGAACGCTAGATGAACCTAGACATTCTGCCTATTGTGCGATGCTGTTTAGGGTCTTTGAAAATTATGGCTCCAAGTCCAACAATAATTGATTTTCCGTTTGCTGTTCTGTTCATGAAACTAAAATGCATGCAAATTCGGTTTGGCTTGGTGTAAGAAATGGCACTTGAGCATGCGCGTTCTGTGCTATGATTACAGGTCAATGTGAGAGGACTCGAGAATGTGTTGAAGGCTGCTAAGAGAACACCGACCGTAAAGAAGATAATTTACACATCTTCATTCTTTGCAATTGGCCCAACTGATGGTTATGTTGCAGATGAGACACAGAGACATCAAGAGAAAACATTTTGCTCAGAGTACGAGAAATCCAAGGTTCTTGCAGACCGAATTGCATTGCAGGCAGCAGCAGAAGGGGTGCCAATCACCATTCTCTACCCTGGAGTTATCTACGGGCCTGGAAAACTAACTACTGGAAATATTGTTTCCCGTATTGTGAGAGAATTTCTTACTCATGGCTATGTCAAATATGTAGTTATTTATTATCGTATATTTGTTTCAATTTTAAAATATAACATTTCCTGAAAGATAGCCATGACCAGAAGAAATTAAACTGTTGTGATTCTTGCAGTTAATTGAACGGTTTAATTGGCGCCTACCTGGTTACATAGGAGATGGGTATGATAGGGAATCGTTTTGCCATGTTGACGACGTTGTTAATGGGCACATAGCAGCAATGGAGAAGGGCAGACCGGGGGAAAGATATCTCCTTACTGGAGAAAACTTATCATTCAAACAGATTTTCGATATGGCTGCTAACATTACAAATACGAAGGCACCCCTATTCCATGTACCTCTCTGGTTGATTGAAATATGGGTGGATTTCAGTTTTTATTTCTCACATCACTGGAAATCTCACACTTATCAGTTACCCTACAGTACGTGTTCTTAGACATCAATGGGCATATTCATGTGATAAAGCCAAGAGGGAGCTGGGCTACAGTCCAAGAAACTTAACTGAAGGTCTATCAGAGATGCTCTTATGGCTCAAGGATGAAAAATTGATCAAGTTTTAGCACTCACCCCTTGTGCTAACTTGTGCTGCATTCCACACCATGTAAACTGAGATCTGATTTAAACCTATTAACTGTAAGATGTACATGTTTGGTGTGGTGTTAATGTTGTATCATATCAGTAATAACTTGAGATGTAACATGGTAGTACTGGTTCCATGGAAGAAAGGAAAAACATGT                       ]
[+] EMBL CB665605             [                             TGGCGCCTTTATTGGCGGCGGCGGCGGCGACTCGACGATGGGCGGCGGCATGAGGGTGGTGGTGACGGGCGCGACGGGGTACCTCGGCGGCCGCCTGTGCGCGGCGCTGGCGGCCGCCGGCCACGCCGTGCGCGCGTTCGCCCGCCGCTCCAGCGACGCCTCCGGGCTCCCGGCATCCGTCGAGCTGGCCTACGGGGACGTCACCGACGAGGGGTCTCTCCCTAGCGACTTCGGGGGGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSR02541A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTTATNGCTCANGGANGAAAAATTNATCACGTTTTAGCACTCACCCCTTGTGCTAACTNNTGCTGCATTCCACACCATGTAAACTGAGATCTGATTTAAACCTATTAACTGTAAGATGTACATGTTTGGTGTGGTGTTAATGTTGTATCATATCAGTAATAACTTGAGATGTAACATGGTAGTACTGGTTCCATGGAAGAAAGGAAAAACATGTTCTTCGATTGAAAAAANAAANAN]


>consensus_13418#0 CGGAAGGCTTGGAAGCCCGCGTTGACTAGTGGCGGTTGGATTGGCGGCGGCGGCGGCGAC TCGACGATGGGCGGCGGCATGAGGGTGGTGGTGACGGGCGCGACGGGGTACCTCGGCGGC CGCCTGTGCGCGGCGCTGGCGGCCGCCGGCCACGCCGTGCGCGCGTTCGCCCGCCGCTCC AGCGACGCCTCCGGGCTCCCGGCATCCGTCGAGCTGGCCTACGGGGACGTCACCGACGAG GGGTCCCTCGCCACCGCCTTCGACGGGTGCGACGCGGTCTTCCACGTCGCCGCCGCCGTC GAGCCGTGGCTCCCCGACCCCTCGGTTTTCACCACCGTACGCGTGCTGATTCATTTCTGA TGTTTTCCTGTGGCAAGTAGAGGGTAACTATATTCATTCAAATCAAAGTGGGGAGTACTA TAGAACGCTAGATGAACCTAGACATTCTGCCTATTGTGCGATGCTGTTTAGGGTCTTTGA AAATTATGGCTCCAAGTCCAACAATAATTGATTTTCCGTTTGCTGTTCTGTTCATGAAAC TAAAATGCATGCAAATTCGGTTTGGCTTGGTGTAAGAAATGGCACTTGAGCATGCGCGTT CTGTGCTATGATTACAGGTCAATGTGAGAGGACTCGAGAATGTGTTGAAGGCTGCTAAGA GAACACCGACCGTAAAGAAGATAATTTACACATCTTCATTCTTTGCAATTGGCCCAACTG ATGGTTATGTTGCAGATGAGACACAGAGACATCAAGAGAAAACATTTTGCTCAGAGTACG AGAAATCCAAGGTTCTTGCAGACCGAATTGCATTGCAGGCAGCAGCAGAAGGGGTGCCAA TCACCATTCTCTACCCTGGAGTTATCTACGGGCCTGGAAAACTAACTACTGGAAATATTG TTTCCCGTATTGTGAGAGAATTTCTTACTCATGGCTATGTCAAATATGTAGTTATTTATT ATCGTATATTTGTTTCAATTTTAAAATATAACATTTCCTGAAAGATAGCCATGACCAGAA GAAATTAAACTGTTGTGATTCTTGCAGTTAATTGAACGGTTTAATTGGCGCCTACCTGGT TACATAGGAGATGGGTATGATAGGGAATCGTTTTGCCATGTTGACGACGTTGTTAATGGG CACATAGCAGCAATGGAGAAGGGCAGACCGGGGGAAAGATATCTCCTTACTGGAGAAAAC TTATCATTCAAACAGATTTTCGATATGGCTGCTAACATTACAAATACGAAGGCACCCCTA TTCCATGTACCTCTCTGGTTGATTGAAATATGGGTGGATTTCAGTTTTTATTTCTCACAT CACTGGAAATCTCACACTTATCAGTTACCCTACAGTACGTGTTCTTAGACATCAATGGGC ATATTCATGTGATAAAGCCAAGAGGGAGCTGGGCTACAGTCCAAGAAACTTAACTGAAGG TCTATCAGAGATGCTCTTATGGCTCAAGGATGAAAAATTGATCAAGTTTTAGCACTCACC CCTTGTGCTAACTTGTGCTGCATTCCACACCATGTAAACTGAGATCTGATTTAAACCTAT TAACTGTAAGATGTACATGTTTGGTGTGGTGTTAATGTTGTATCATATCAGTAATAACTT GAGATGTAACATGGTAGTACTGGTTCCATGGAAGAAAGGAAAAACATGTTCTTCGATTGA AAAAANAAANAN



consensusID : consensus_13418#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 896
fasta sequence
                              [CATCTTCATCACGGTCAATGTGGGAGGGCTCGAGAATGTTTTGAAAGCTGCCAGGAGGACACCAACAGTAAAGAAAATAGTTTATACGTCATCATTCTTTGCCATTGGCCCAACTGATGGATATGTTGCAGATGAGACACAGATGCATCAAGGAAAAACATTTTGCACGGAGTATGAGAAATCAAAGGTTCTTGCAGACCAGATCGCATTGCAGGCAGCAGCAGAGGGGATGCCAATCACCATCGTCTATCCAGGATTCATGTATGGTCCTGGAAAACTTACAGCAGGAAATCTTGTTTCTCGCATCTTGATCGAGAGGTTCAATGGGCGTTTACCTGGTTACGTCGGGCATGGCCATGATCGAGAATCATTCTGCCATGTCGACGATGTTGTTGCTGGACATGTAGCAGCAATGGAGAAAGGCAGAGAAGGTGAAAGATACCTCCTCACCGGAGAGAACACGTCGCTGGTTCAGATCTTCGACATGGCCTCCAGGATCACGAACACA-AAGGCGCCC-AGATTCCACGTACCCCTCTGG-TTGCTTGAAATTTACGGGTGGA-TTTCAGTTCTTGTTTCAAGAATCACCGGGAAGCTCCCGTTCATCAGCTACCCTGCAGTGCGTGTTCTTAGGCATCAATGGGCATACTCATGTGAGAAGGCCAAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAAGGTCTATCAGAGACGCTCTTATGGCTCAAGGACAGCGAAATGATCAGATTTTAGTGTTCTACATTTCACTCATGTAAACATATCAGCATTGCTGTAACTGCATAAATAGTTAAATCAAAGAA-AACATGTGGTTTGAAATTTGAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CB678453             [CATCTTCATCACGGTCAATGTGGGAGGGCTCGAGAATGTTTTGAAAGCTGCCAGGAGGACACCAACAGTAAAGAAAATAGTTTATACGTCATCATTCTTTGCCATTGGCCCAACTGATGGATATGTTGCAGATGAGACACAGATGCATCAAGGAAAAACATTTTGCACGGAGTATGAGAAATCAAAGGTTCTTGCAGACCAGATCGCATTGCAGGCAGCAGCAGAGGGGATGCCAATCACCATCGTCTATCCAGGATTCATGTATGGTCCTGGAAAACTTACAGCAGGAAATCTTGTTTCTCGCATCTTGATCGAGAGGTTCAATGGGCGTTTACCTGGTTACGTCGGGCATGGCCATGATCGAGAATCATTCTGCCATGTCGACGATGTTGTTGCTGGACATGTAGCAGCAATGGAGAAAGGCAGAGAAGGTGAAAGATACCTCCTCACCGGAGAGAACACGTCGCTGGTTCAGATCTTCGACATGGCCTCCAGGATCACGAACACA AAGGCGCCC AGATTCCACGTACCCCTCTGG TTGCTTGAAATTTACGGGTGGA TTTCAGTTCTTGTTTCAAGAATCACCGGGAAGCTCCCGTTCATCAGCTACCCTGCAGTGCGTGTTCTTAGGCATCAATGGGCATACTCATGTGAGAAGGCCAAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAAGGTCTATCAGAGACGCTCTTATGGCTCAAGGACAGCGAAATGATCAGATTTTAGTGTTCTACATTTCACTCATGTAAACATATCAGCATTGCTGTAACTGCATAAATAGTTAAATCAAAGAA AACATGTGGTTTGAAATTTGAAAAAAAAAggaa                                         ]
[-] EMBL CB667894             [                                                                              AGTTTATACGTCATCATTCTTTGCCATTGGCCCAACTGATGGATATGTTGCAGATGAGACACAGATGCATCAAGGAAAAACATTTTGCACGGAGTATGAGAAATCAAAGGTTCTTGCAGACCAGATCGCATTGCAGGCAGCAGCAGAGGGGATGCCAATCACCATCGTCTATCCAGGATTCATGTATGGTCCTGGAAAACTTACAGCAGGAAATCTTGTTTCTCGCATCTTGATCGAGAGGTTCAATGGGCGTTTACCTGGTTACGTCGGGCATGGCCATGATCGAGAATCATTCTGCCATGTCGACGATGTTGTTGCTGGACATGTAGCAGCAATGGAGAAAGGCAGAGAAGGTGAAAGATACCTCCTCACCGGAGAGAACACGTCGCTGGTTCAGATCTTCGACATGGCCTCCAGGATCACGAACACA AAGGCGCCC AGATTCCACGTACCCCTCTGG TTGCTTGAAATTTACGGGTGGA TTTCAGTTCTTGTTTCAAGAATCACCGGGAAGCTCCCGTTCATCAGCTACCCTGCAGTGCGTGTTCTTAGGCATCAATGGGCATACTCATGTGAGAAGGCCAAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAAGGTCTATCAGAGACGCTCTTATGGCTCAAGGACAGCGAAATGATCAGATTTTAGTGTTCTACATTTCACTCATGTAAACATATCAGCATTGCTGTAACTGCATAAATAGTTAAAAGGAAGAA AACATGTGGTTTGAAATTTGAAAAACCTAAAAgg                                        ]
[-] EMBL CB661272             [                                                                              AGTTTATACGTCATCATTCTTTGCCATTGGCCCAACTGATGGATATGTTGCAGATGAGACACAGATGCATCAAGGAAAAACATTTTGCACGGAGTATGAGAAATCAAAGGTTCTTGCAGACCAGATCGCATTGCAGGCAGCAGCAGAGGGGATGCCAATCACCATCGTCTATCCAGGATTCATGTATGGTCCTGGAAAACTTACAGCAGGAAATCTTGTTTCTCGCATCTTGATCGAGAGGTTCAATGGGCGTTTACCTGGTTACGTCGGGCATGGCCATGATCGAGAATCATTCTGCCATGTCGACGATGTTGTTGCTGGACATGTAGCAGCAATGGAGAAAGGCAGAGAAGGTGAAAGATACCTCCTCACCGGAGAGAACACGTCGCTGGTTCAGATCTTCGACATGGCCTCCAGGATCACGAACACA AAGGCGCCC AGATTCCACGTACCCCTCTGG TTGCTTGAAATTTACGGGTGGA TTTCAGTTCTTGTTTCAAGAATCACCGGGAAGCTCCCGTTCATCAGCTACCCTGCAGTGCGTGTTTTTAGGCATCAATGGGCATACTCATGTGAGAAGGCCAAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAAGGTCTATCAGAGACGCTCTTATGGCTCAAGGACAGCGAAATGATCAGATTTTAGTGTTCTACATTTCACTCATGTAAACATATCAGCATTGCTGTAACTGCATAAATAGTTAAATCAAAGAA AACATGTGGTT                                                               ]
[-] EMBL CB662198             [                                                                                                                ACTGATGGATATGTTGCAGATGAGACACAGATGCATCAAGGAAAAACATTTTGCACGGAGTATGAGAAATCAAAGGTTCTTGCAGACCAGATCGCATTGCAGGCAGCAGCAGAGGGGATGCCAATCACCATCGTCTATCCAGGATTCATGTATGGTCCTGGAAAACTTACAGCAGGAAATCTTGTTTCTCGCATCTTGATCGAGAGGTTCAATGGGCGTTTACCTGGTTACGTCGGGCATGGCCATGATCGAGAATCATTCTGCCATGTCGACGATGTTGTTGCTGGACATGTAGCAGCAATGGAGAAAGGCAGAGAAGGTGAAAGATACCTCCTCACCGGAGAGAACACGTCGCTGGTTCAGATCTTCGACATGGCCTCCAGGATCACGAACACA AAGGCGCCC AGATTCCACGTACCCCTCTGG TTGCTTGAAATTTACGGGTGGA TTTCAGTTCTTGTTTCAAGAATCACCGGGAAGCTCCCGTTCATCAGCTACCCTGCAGTGCGTGTTTTTAGGCATCAATGGGCATACTCATGTGAGAAGGCCAAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAAGGTCTATCAGAGACGCTCTTATGGCTCAAGGACAGCGAAATGATCAGATTTTAGTGTTTTACATTTCACTCATGTAAACATATCAGCATTGCTGTAACTGCATAAATAAGGAAATCAAAGAA AACATGTGGTTTGTCATTgca                                                     ]
[+] EMBL BI809079             [                                                                                                                                                                                                                                                                                                     TTGTTTCTCGCATCTTGATCGAGA GTTCAATGGGCGTTTACCTGGTTAC TC GGCATGGCCATGATCGAGAATCATTCTGCCATGTCGACGATGTTGTTGCTGGACATGTA CAGCAATGGAGAAAGGCAGAGAAGGTGAAAGATACCTCCTCACCGGAGAGAACACGTCGCTGGTTCAGATCTTCGACATGGCCTCCAGGATCACGAACACC AAGGCGCCC AGATTCCACGTACCCCTCTGG TTGCTTGAAATTTACGGGTGGA TTTCAGTTCTTGTTTCAAGAATCACCGGGAAGCTCCCGTTCATCAGCTACCCTGCAGTGCGTGTTCTTAGGCATCAATGGGCATACTCATGTGAGAAGGCCCAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAAGGTCTATCAGAGACGCTCTTATGGCTCAAGGACAGCGAAATGATCAGATTTTAGTGTTCTACATTTCACTCATGTAAACATATCAGCCTTGCTGTAACTGCATAAATAGTTAAATC AAGAA AACATGTGGTTTGAAATTTGAAAAA                                                 ]
[+] EMBL BI811383             [                                                                                                                                                                                                                                                                                                                        CGAGAGGTTCAAT GGC TTTACCTGGTTAC TCGGGCAT GCCATGATCGAGAATCATTCTGCCATGTCGACGATGTTGTTGCTGGACATGTAGCAGCAATGGAGAAAGGCAGAGAAGGTGAAAGATACCTCCTCACCGGAGAGAACACGTCGCTGGTTCAGATCTTCGACATGGCCTCCAGGATCACGAACACACAAGGCGCCC AGATTCCACGTACCCCTCTGG TTGCTTGAAATTTACGGGTGGA TTTCAGTTCTTGTTTCAAGAATCACCGGGAAGCTCCCGTTCATCAGCTACCCTGCAGTGCGTGTTCTTAGGCATCAATGGGCATACTCATGTGAGAAGGCCAAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAAGGTCTATCAGAGACGCTCTTATGGCTCAAGGACAGCGAAATGATCAGATTTTAGTGTTCTACATTTCACTCATGTAAACATATCAGCATTGCTGTAACTGCATAAATAGTTAAATC AAGAA AACATGTGGTTTGAAATTTGAAAAAAA                                               ]
[+] EMBL BM419958             [                                                                                                                                                                                                                                                                                                                            AGGTTCAATGGGCGTTTACCTGGTTAC TCGGGCATGGCCATGATCGAGAATCATTCTGCCATGTCGACGATGTTGTTGCTGGACATGTAGCAGCAATGGAGAAAGGCAGAGAAGGTGAAAGATACCTCCTCACCGGAGAGAACACGTCGCTGGTTCAGATCTTCGACATGGCCTCCAGGATCACGAACAC  AAGGCGCCC AGATTCCACGTACCCCTCTGG TTGCTTGAAATTTACGGGTGGA TTTCAGTTCTTGTTTCAAGAATCACCGGGAAGCTCCCGTTCATCAGCTACCCTGCAGTGCGTGTTCTTAGGCATCAATGGGCATACTCATGTGAGAAGGCCAAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAAGGTCTATCAGAGACGCTCTTATGGCTCAAGGACAGCGAAATGATCAGATTTTAGTGTTCTACATTTCACTCATGTAAACATATCAGCATTGCTGTAACTGCATAAATAGTTAAATC AAGAACAACATGTGGTTTGAAATTTGAAAAAAAA                                              ]
[+] EMBL BI809543             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      tcaAGATCTTCGACAT GCCTCCAGGATCACGAACACA AAGGCGCCCAAGATTCCACGTACCCCTCTGGTTTGCTTGAAATTTACGGGTGGATTTTCAGTTCTTGTTTCAAGAATCACCGGGAAGCTCCCGTTCATCAGCTACCCTGCAGTGCGTGTTCTTAGGCATCAATGGGCATACTCATGTGAGAAGGCCAAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAAGGTCTATCAGAGACGCTCTTATGGCTCAAGGACAGCGAAATGATCAGATTTTAGTGTTCTACATTTCACTCATGTAAACATATCAGC TTGCTGTAACTGCATAAATAGTTAAATCCAAGAA AACATGTGGTTTGAAATTTGAAAAAAAAA                                             ]
[+] EMBL AU165155             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGTACCCCTCTGG TTGCTTGAAATTTACGGGTGGA TTTCAGTTCTTGTTTCAAGAATCACCGGGAAGCTCCCGTTCATCAGCTACCCTGCAGTGCGTGTTCTTAGGCATCAATGGGCATACTCATGTGAGAAGGCCAAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAAGGTCTATCAGAGACGCTCTTATGGCTCAAGGACAGCGAAATGATCAGATTTTAGTGTTCTACATTTCACTCATGTAAACATATCAGCATTGCTGTAACTGCATAAATAGTTAAATCAAAGAA AACATGTGGTTTGAAATTTGAAAAA                                                 ]
[+] EMBL CA754387             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGTAAACATATCAGCATTGCTGTAACTGCATAAATAGTTAAATCAAAGAA AACATGTGGTTTGAAATTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_13418#1 CATCTTCATCACGGTCAATGTGGGAGGGCTCGAGAATGTTTTGAAAGCTGCCAGGAGGAC ACCAACAGTAAAGAAAATAGTTTATACGTCATCATTCTTTGCCATTGGCCCAACTGATGG ATATGTTGCAGATGAGACACAGATGCATCAAGGAAAAACATTTTGCACGGAGTATGAGAA ATCAAAGGTTCTTGCAGACCAGATCGCATTGCAGGCAGCAGCAGAGGGGATGCCAATCAC CATCGTCTATCCAGGATTCATGTATGGTCCTGGAAAACTTACAGCAGGAAATCTTGTTTC TCGCATCTTGATCGAGAGGTTCAATGGGCGTTTACCTGGTTACGTCGGGCATGGCCATGA TCGAGAATCATTCTGCCATGTCGACGATGTTGTTGCTGGACATGTAGCAGCAATGGAGAA AGGCAGAGAAGGTGAAAGATACCTCCTCACCGGAGAGAACACGTCGCTGGTTCAGATCTT CGACATGGCCTCCAGGATCACGAACACAAAGGCGCCCAGATTCCACGTACCCCTCTGGTT GCTTGAAATTTACGGGTGGATTTCAGTTCTTGTTTCAAGAATCACCGGGAAGCTCCCGTT CATCAGCTACCCTGCAGTGCGTGTTCTTAGGCATCAATGGGCATACTCATGTGAGAAGGC CAAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAAGGTCTATCAGAGACGCTCTT ATGGCTCAAGGACAGCGAAATGATCAGATTTTAGTGTTCTACATTTCACTCATGTAAACA TATCAGCATTGCTGTAACTGCATAAATAGTTAAATCAAAGAAAACATGTGGTTTGAAATT TGAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13418#0      CGGAAGGCTTGGAAGCCCGCGTTGACTAGTGGCGGTTGGATTGGCGGCGGCGGCGGCGAC 60
consensus_13418#1      ------------------------------------------------------------
                                                                                   

consensus_13418#0      TCGACGATGGGCGGCGGCATGAGGGTGGTGGTGACGGGCGCGACGGGGTACCTCGGCGGC 120
consensus_13418#1      ------------------------------------------------------------
                                                                                   

consensus_13418#0      CGCCTGTGCGCGGCGCTGGCGGCCGCCGGCCACGCCGTGCGCGCGTTCGCCCGCCGCTCC 180
consensus_13418#1      ------------------------------------------------------------
                                                                                   

consensus_13418#0      AGCGACGCCTCCGGGCTCCCGGCATCCGTCGAGCTGGCCTACGGGGACGTCACCGACGAG 240
consensus_13418#1      ------------------------------------------------------------
                                                                                   

consensus_13418#0      GGGTCCCTCGCCACCGCCTTCGACGGGTGCGACGCGGTCTTCCACGTCGCCGCCGCCGTC 300
consensus_13418#1      ------------------------------------------------------------
                                                                                   

consensus_13418#0      GAGCCGTGGCTCCCCGACCCCTCGGTTTTCACCACCGTACGCGTGCTGATTCATTTCTGA 360
consensus_13418#1      ------------------------------------------------------------
                                                                                   

consensus_13418#0      TGTTTTCCTGTGGCAAGTAGAGGGTAACTATATTCATTCAAATCAAAGTGGGGAGTACTA 420
consensus_13418#1      ------------------------------------------------------------
                                                                                   

consensus_13418#0      TAGAACGCTAGATGAACCTAGACATTCTGCCTATTGTGCGATGCTGTTTAGGGTCTTTGA 480
consensus_13418#1      ------------------------------------------------------------
                                                                                   

consensus_13418#0      AAATTATGGCTCCAAGTCCAACAATAATTGATTTTCCGTTTGCTGTTCTGTTCATGAAAC 540
consensus_13418#1      ------------------------------------------------------------
                                                                                   

consensus_13418#0      TAAAATGCATGCAAATTCGGTTTGGCTTGGTGTAAGAAATGGCACTTGAGCATGCGCGTT 600
consensus_13418#1      ------------------------------------------------------------
                                                                                   

consensus_13418#0      CTGTGCTATGATTACAGGTCAATGTGAGAGGACTCGAGAATGTGTTGAAGGCTGCTAAGA 660
consensus_13418#1      ---CATCTTCATCAC-GGTCAATGTGGGAGGGCTCGAGAATGTTTTGAAAGCTGCCAGGA 56
                               * ** ** ********** **** *********** ***** ***** * **

consensus_13418#0      GAACACCGACCGTAAAGAAGATAATTTACACATCTTCATTCTTTGCAATTGGCCCAACTG 720
consensus_13418#1      GGACACCAACAGTAAAGAAAATAGTTTATACGTCATCATTCTTTGCCATTGGCCCAACTG 116
                       * ***** ** ******** *** **** ** ** *********** *************

consensus_13418#0      ATGGTTATGTTGCAGATGAGACACAGAGACATCAAGAGAAAACATTTTGCTCAGAGTACG 780
consensus_13418#1      ATGGATATGTTGCAGATGAGACACAGATGCATCAAGGAAAAACATTTTGCACGGAGTATG 176
                       **** **********************  *******  ************ * ***** *

consensus_13418#0      AGAAATCCAAGGTTCTTGCAGACCGAATTGCATTGCAGGCAGCAGCAGAAGGGGTGCCAA 840
consensus_13418#1      AGAAATCAAAGGTTCTTGCAGACCAGATCGCATTGCAGGCAGCAGCAGAGGGGATGCCAA 236
                       ******* ****************  ** ******************** *** ******

consensus_13418#0      TCACCATTCTCTACCCTGGAGTTATCTACGGGCCTGGAAAACTAACTACTGGAAATATTG 900
consensus_13418#1      TCACCATCGTCTATCCAGGATTCATGTATGGTCCTGGAAAACTTACAGCAGGAAATCTTG 296
                       *******  **** ** *** * ** ** ** *********** **  * ****** ***

consensus_13418#0      TTTCCCGTATTGTGAGAGAATTTCTTACTCATGGCTATGTCAAATATGTAGTTATTTATT 960
consensus_13418#1      TTTCTCGCATC------------------------------------------------- 307
                       **** ** **                                                  

consensus_13418#0      ATCGTATATTTGTTTCAATTTTAAAATATAACATTTCCTGAAAGATAGCCATGACCAGAA 1020
consensus_13418#1      ------------------------------------------------------------
                                                                                   

consensus_13418#0      GAAATTAAACTGTTGTGATTCTTGCAGTTAATTGAACGGTTTAATTGGCGCCTACCTGGT 1080
consensus_13418#1      ---------------------------TTGATCGAGAGGTTCAATGGGCGTTTACCTGGT 340
                                                  ** ** **  **** *** ****  ********

consensus_13418#0      TACATAGGAGATGGGTATGATAGGGAATCGTTTTGCCATGTTGACGACGTTGTTAATGGG 1140
consensus_13418#1      TACGTCGGGCATGGCCATGATCGAGAATCATTCTGCCATGTCGACGATGTTGTTGCTGGA 400
                       *** * **  ****  ***** * ***** ** ******** ***** ******  *** 

consensus_13418#0      CACATAGCAGCAATGGAGAAGGGCAGACCGGGGGAAAGATATCTCCTTACTGGAGAAAAC 1200
consensus_13418#1      CATGTAGCAGCAATGGAGAAAGGCAGAGAAGGTGAAAGATACCTCCTCACCGGAGAGAAC 460
                       **  **************** ******   ** ******** ***** ** ***** ***

consensus_13418#0      TTATCATTCAAACAGATTTTCGATATGGCTGCTAACATTACAAATACGAAGGCACCCCTA 1260
consensus_13418#1      ACGTCGCTGGTTCAGATCTTCGACATGGCCTCCAGGATCACGAACACAAAGGCGCCCAGA 520
                          **  *    ***** ***** *****  * *  ** ** ** ** ***** ***  *

consensus_13418#0      TTCCATGTACCTCTCTGGTTGATTGAAAT--ATGGGTGGATTTCAGTTTTTATTTCTCAC 1318
consensus_13418#1      TTCCACGTACCCCTCTGGTTGCTTGAAATTTACGGGTGGATTTCAGTTCTTGTTTCAAGA 580
                       ***** ***** ********* *******  * *************** ** ****    

consensus_13418#0      ATCACTGGAAATCTCACACTTATCAGTTACCCTACAGTACGTGTTCTTAGACATCAATGG 1378
consensus_13418#1      ATCACCGGGAAGCTCCCGTTCATCAGCTACCCTGCAGTGCGTGTTCTTAGGCATCAATGG 640
                       ***** ** ** *** *  * ***** ****** **** *********** *********

consensus_13418#0      GCATATTCATGTGATAAAGCCAAGAGGGAGCTGGGCTACAGTCCAAGAAACTTAACTGAA 1438
consensus_13418#1      GCATACTCATGTGAGAAGGCCAAGAAGGAGCTAGGGTACAGTCCTAGGAGCTTGACTGAA 700
                       ***** ******** ** ******* ****** ** ******** ** * *** ******

consensus_13418#0      GGTCTATCAGAGATGCTCTTATGGCTCAAGGATGAAAAATTGATCAAGTTTTAGCACTCA 1498
consensus_13418#1      GGTCTATCAGAGACGCTCTTATGGCTCAAGGACAGCGAAATGATCAGATTTTAG------ 754
                       ************* ******************     ** ******  ******      

consensus_13418#0      CCCCTTGTGCTAACTTGTGCTGCATTCCACACCATGTAAAC---TGAGATCTGATTTAAA 1555
consensus_13418#1      ---------------TGTTCTACATTTCAC-TCATGTAAACATATCAGCATTGCTGTAAC 798
                                      *** ** **** ***  *********   * **   ** * *** 

consensus_13418#0      CCTATTAACTGTAAGATGTACATGTTTGGTGTGGTGTTAATGTTGTATCATATCAGTAAT 1615
consensus_13418#1      TGCATAAATAGTTAAAT-CAAAGAAAACATGTGGTTTGAAATTTGAAAAAAAAAAAAAGA 857
                          ** **  ** * **  * *       ****** * **  *** *  * *  *  *  

consensus_13418#0      AACTTGAGATGTAACATGGTAGTACTGGTTCCATGGAAGAAAGGAAAAACATGTTCTTCG 1675
consensus_13418#1      AAAAAAAAAAAAAAAAAAAAAAAA----------AAAAAAAAAAAAAAA----------- 896
                       **    * *   ** *    *  *            ** ***  *****           

consensus_13418#0      ATTGAAAAAANAAANAN 1692
consensus_13418#1      -----------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)