cluster # 13423

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Oryza sativa
cluster # 13423 cluster # 13423 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13423#0 length = 2277 sequences # 12

consensus_13423#1 length = 192 sequences # 1

consensusID : consensus_13423#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 2277
fasta sequence

                              [CTTGTCGGCGACTCCTCCCACTCCCAGATCCCCACCTCGCTCTCACTCCCCCACTCTTCCCCCCTCGCCGCGGCGGCCAGATCCGGGCGGCGGAATGCTGGGCCGGGCGGGGGCGCTGTCCGCGGCGCGGTGGCGCGGCGGCGCCGGGACCGGGACCGGGATCGGGATCGACCTGCGCGCCGCGCTGCGCTCCGGGGGCAACCTCCTCTTCGCGCTCTTCGTGGCGGCCGTCCTCGCCTTCACCCTCCTCGCCGCGGTCCACAGCCCCGACGACCCGCTCCTCCACCCCTCATCGCACCAGCTCACCGCGTTCCTCACCTCCGCCACCTCCAACTCCACCTTCCTCGCCGACGACTCCGTCCTCCGCACCGGCGAGGACTTCGCCGCCGCCATCGGCGCCAACTCCTCCGATGCCGCCGCCGCCGCGGAGGCCACCGTCGTCGCCGAGGCCGTCCCGTTCATCAAGCTCGAGGACGTCGCGACCAAGGAGGAGTCGTCGGGGGCGGAGCGGGCCGTCACCGTTGACACCGACGCCAGCTCGGACGCGGGCGCCGCGGCGGAGGAGAACCCCATCGTCGAGGCGGTCTCCTGCGACACGGAGGCGCCGGTGGACTGCACGGGGGACAAGGATCTCTTCAACCTGCTCATGCGCACGGCGATCGAGAAGTTCTCCGACCTCCACTTCTACCGCTTCGGCCGCCCCGTCGCCGTGCCGGGGAGCCCCATGGAGTGCGACCTCGCATGGCGCTTCCGCCCCGCCGAGGACACCAACGGCCGCACCACCTACTACAAGGACTACCG-CCGCTTCACGCTCACCCGCGACGTCAACACCTGCAACCTCGTCGTCGGCAATGTGGGCGAGTACCACTCCGGCACCGGCGCCAAGCGCAGCGGCCGCCGCAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACCGGTCACCGACTTTGTGCCGGCCAAGACGCAGATGAG-GCTCGATGAGAACGCTGCCAATGCAGACACCACGGCCGCCTCCGAGCCGGAGCTAG-TTGTCG-GTGAAGCTGTCAATGACAATTTACC-GGTG-GTCGAATCTGAGTC-TGAATTCA-GCCGCGGAAAGTATC-TCATCTACATGGGCGGTGGTGAGAGATGCAAGAGCATGAACCACTACGTTTGGGGATTCTTGTGTGCACTTGGTGAGGCACAGTACTTGAACCGGACACTTGTTATGGACCTTAATGTGTGCCTCAATTCACGGTATACTTCAAGTGGCAAGGATGAAGAGAGAGATTTTAGGCTCTACTTTGATTTTGAGCACTTGAAGCAATCAGCATCGGTCATTGACCAGAGCCAGTTCTGGACAGATTGGGGGAAGTGGCACAAGAAGGATAGACTGAAGAATCACTACACTGAAGACATCAAGGTGACCCCGATGCAACTTCGTGACGTCAAGGACACACTGATCATGAGGAAGTTTGGGAATGTTGAGCCTGATAACTTCTGGTCTCGTGTATGTGAGGGTGAGACGGAGGCAGTGATCAAGCGCCCATGGTATTTATTGTGGAAATCGCGTCGATTGATGGAGATCGTGTCTGCCATTTCCTCCCGGATGGATTGGGACTTTGATTCAGTCCATGTTGTGAGGGGGGAGAAAGCCCAGAACAAACAGTTGTGGCCAAATCTTGATAGAGATACTTCTCCAGATAGTCTCCTTACGACACTTAATGATAAGGTCGGTGCTGGCCGGCATTTGTACATTGCAACCAATGAACCCGATAAATCATTCTTTGACCCAATGAAGGGTAAGTATCGAACACACTTCCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGTGGTACACTGAAACAAAGGAGCTGAGCAATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTTGACA-CTGAGGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTA-CTCGTGATTGCAAGAATGGTGTCAATACATGCCCTGCTTCCTCATGAACATCTCGTGAATTATGTGCGCTGAGTCTCAAATGTTGTGCTTGATATAATATTTTTGAACTACCGTGTATCTTAAGCACATATGGCTTTGTTGTAGCTAGCTAGTTCATATGAGTGTTTCTGCAGGACACTGTTGTTGTATTTTATCACCCAGAACACATTAGTTTGTTGAATTCATGCATCGGCACTTTGTAGTTTGTACTAATTGCTTAAACAAGAAATTTGCTCAATGTTACCATGTTAAGCCTCTATTCTGAAAAAGA]

[+] EMBL AK101916             [CTTGTCGGCGACTCCTCCCACTCCCAGATCCCCACCTCGCTCTCACTCCCCCACTCTTCCCCCCTCGCCGCGGCGGCCAGATCCGGGCGGCGGAATGCTGGGCCGGGCGGGGGCGCTGTCCGCGGCGCGGTGGCGCGGCGGCGCCGGGACCGGGACCGGGATCGGGATCGACCTGCGCGCCGCGCTGCGCTCCGGGGGCAACCTCCTCTTCGCGCTCTTCGTGGCGGCCGTCCTCGCCTTCACCCTCCTCGCCGCGGTCCACAGCCCCGACGACCCGCTCCTCCACCCCTCATCGCACCAGCTCACCGCGTTCCTCACCTCCGCCACCTCCAACTCCACCTTCCTCGCCGACGACTCCGTCCTCCGCACCGGCGAGGACTTCGCCGCCGCCATCGGCGCCAACTCCTCCGATGCCGCCGCCGCCGCGGAGGCCACCGTCGTCGCCGAGGCCGTCCCGTTCATCAAGCTCGAGGACGTCGCGACCAAGGAGGAGTCGTCGGGGGCGGAGCGGGCCGTCACCGTTGACACCGACGCCAGCTCGGACGCGGGCGCCGCGGCGGAGGAGAACCCCATCGTCGAGGCGGTCTCCTGCGACACGGAGGCGCCGGTGGACTGCACGGGGGACAAGGATCTCTTCAACCTGCTCATGCGCACGGCGATCGAGAAGTTCTCCGACCTCCACTTCTACCGCTTCGGCCGCCCCGTCGCCGTGCCGGGGAGCCCCATGGAGTGCGACCTCGCATGGCGCTTCCGCCCCGCCGAGGACACCAACGGCCGCACCACCTACTACAAGGACTACCG CCGCTTCACGCTCACCCGCGACGTCAACACCTGCAACCTCGTCGTCGGCAATGTGGGCGAGTACCACTCCGGCACCGGCGCCAAGCGCAGCGGCCGCCGCAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACCGGTCACCGACTTTGTGCCGGCCAAGACGCAGATGAG GCTCGATGAGAACGCTGCCAATGCAGACACCACGGCCGCCTCCGAGCCGGAGCTAG TTGTCG GTGAAGCTGTCAATGACAATTTACC GGTG GTCGAATCTGAGTC TGAATTCA GCCGCGGAAAGTATC TCATCTACATGGGCGGTGGTGAGAGATGCAAGAGCATGAACCACTACGTTTGGGGATTCTTGTGTGCACTTGGTGAGGCACAGTACTTGAACCGGACACTTGTTATGGACCTTAATGTGTGCCTCAATTCACGGTATACTTCAAGTGGCAAGGATGAAGAGAGAGATTTTAGGCTCTACTTTGATTTTGAGCACTTGAAGCAATCAGCATCGGTCATTGACCAGAGCCAGTTCTGGACAGATTGGGGGAAGTGGCACAAGAAGGATAGACTGAAGAATCACTACACTGAAGACATCAAGGTGACCCCGATGCAACTTCGTGACGTCAAGGACACACTGATCATGAGGAAGTTTGGGAATGTTGAGCCTGATAACTTCTGGTCTCGTGTATGTGAGGGTGAGACGGAGGCAGTGATCAAGCGCCCATGGTATTTATTGTGGAAATCGCGTCGATTGATGGAGATCGTGTCTGCCATTTCCTCCCGGATGGATTGGGACTTTGATTCAGTCCATGTTGTGAGGGGGGAGAAAGCCCAGAACAAACAGTTGTGGCCAAATCTTGATAGAGATACTTCTCCAGATAGTCTCCTTACGACACTTAATGATAAGGTCGGTGCTGGCCGGCATTTGTACATTGCAACCAATGAACCCGATAAATCATTCTTTGACCCAATGAAGGGTAAGTATCGAACACACTTCCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGTGGTACACTGAAACAAAGGAGCTGAGCAATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTTGACA CTGAGGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTA CTCGTGATTGCAAGAATGGTGTCAATACATGCCCTGCTTCCTCATGAACATCTCGTGAATTATGTGCGCTGAGTCTCAAATGTTGTGCTTGATATAATATTTTTGAACTACCGTGTATCTTAAGCACATATGGCTTTGTTGTAGCTAGCTAGTTCATATGAGTGTTTCTGCAGGACACTGTTGTTGTATTTTATCACCCAGAACACATTAGTTTGTTGAATTCATGCATCGGCACTTTGTAGTTTGTACTAATTGCTTAAACAAGAAATTTGCTCAATGTTACCATGTTAAGCCTCTATTCTGA      ]
[+] EMBL AK102067             [                                                            CCCCTCGCCGCGGCGGCCAGATCCGGGCGGCGGAATGCTGGGCCGGGCGGGGGCGCTGTCCGCGGCGCGGTGGCGCGGCGGCGCCGGGACCGGGACCGGGATCGGGATCGACCTGCGCGCCGCGCTGCGCTCCGGGGGCAACCTCCTCTTCGCGCTCTTCGTGGCGGCCGTCCTCGCCTTCACCCTCCTCGCCGCGGTCCACAGCCCCGACGACCCGCTCCTCCACCCCTCATCGCACCAGCTCACCGCGTTCCTCACCTCCGCCACCTCCAACTCCACCTTCCTCGCCGACGACTCCGTCCTCCGCACCGGCGAGGACTTCGCCGCCGCCATCGGCGCCAACTCCTCCGATGCCGCCGCCGCCGCGGAGGCCACCGTCGTCGCCGAGGCCGTCCCGTTCATCAAGCTCGAGGACGTCGCGACCAAGGAGGAGTCGTCGGGGGCGGAGCGGGCCGTCACCGTTGACACCGACGCCAGCTCGGACGCGGGCGCCGCGGCGGAGGAGAACCCCATCGTCGAGGCGGTCTCCTGCGACACGGAGGCGCCGGTGGACTGCACGGGGGACAAGGATCTCTTCAACCTGCTCATGCGCACGGCGATCGAGAAGTTCTCCGACCTCCACTTCTACCGCTTCGGCCGCCCCGTCGCCGTGCCGGGGAGCCCCATGGAGTGCGACCTCGCATGGCGCTTCCGCCCCGCCGAGGACACCAACGGCCGCACCACCTACTACAAGGACTACCG CCGCTTCACGCTCACCCGCGACGTCAACACCTGCAACCTCGTCGTCGGCAATGTGGGCGAGTACCACTCCGGCACCGGCGCCAAGCGCAGCGGCCGCCGCAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACCGGTCACCGACTTTGTGCCGGCCAAGACGCAGATGAG GCTCGATGAGAACGCTGCCAATGCAGACACCACGGCCGCCTCCGAGCCGGAGCTAG TTGTCG GTGAAGCTGTCAATGACAATTTACC GGTG GTCGAATCTGAGTC TGAATTCA GCCGCGGAAAGTATC TCATCTACATGGGCGGTGGTGAGAGATGCAAGAGCATGAACCACTACGTTTGGGGATTCTTGTGTACACTTGGTGAGGCACAGTACTTGAACCGGACACTTGTTATGGACCTTAATGTGTGCCTCAATTCACGGTATACTTCAAGTGGCAAGGATGAAGAGAGAGATTTTAGGCTCTACTTTGATTTTGAGCACTTGAAGCAATCAGCATCGGTCATTGACCAGAGCCAGTTCTGGACAGATTGGGGGAAGTGGCACAAGAAGGATAGACTGAAGAATCACTACACTGAAGACATCAAGGTGACCCCGATGCAACTTCGTGACGTCAAGGACACACTGATCATGAGGAAGTTTGGGAATGTTGAGCCTGATAACTTCTGGTCTCGTGTATGTGAGGGTGAGACGGAGGCAGTGATCAAGCGCCCATGGTATTTATTGTGGAAATCGCGTCGATTGATGGAGATCGTGTCTGCCATTTCCTCCCGGATGGATTGGGACTTTGATTCAGTCCATGTTGTGAGGGGGGAGAAAGCCCAGAACAAACAGTTGTGGCCAAATCTTGATAGAGATACTTCTCCAGATAGTCTCCTTACGACACTTAATGATAAGGTCGGTGCTGGCCGGCATTTGTACATTGCAACCAATGAACCCGATAAATCATTCTTTGACCCAATGAAGGGTAAGTATCGAACACACTTCCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGTGGTACACTGAAACAAAGGAGCTGAGCAATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTTGACA CTGAGGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTA CTCGTGATTGCAAGAATGGTGTCAATACATGCCCTGCTTCCTCATGAACATCTCGTGAATTATGTGCGCTGAGTCTCAAGTGTTGTGCTTGATATAATATTTTTGAACTACCGTGTATCTTAAGCACATATGGCTTTGTTGTAGCTAGCTAGTTCATATGAGTGTTTCTGCAGGACACTGTTGTTGTATTTTATCACCCAGAACACATTAGTTTGTTGAATTCATGCATCGGCACTTTGTAGTTTGTACTAATTGCTTAAACAAGAAATTTGCTCAATGTTACCATGTTAAGCCTCTATTCTGA      ]
[+] EMBL CB627990             [                                                                                                                                                                                                                                                                                                                                                                                                                AACTCCTCCGATGCCGCCGCCGCCGCGGAGGCCACCGTCGTCGCCGAGGCCGTCCCGTTCATCAAGCTCGAGGACGTCGCGACCAAGGAGGAGTCGTCGGGGGCGGAGCGGGCCGTCACCGTTGACACCGACGCCAGCTCGGACGCGGGCGCCGCGGCGGAGGAGAACCCCATCGTCGAGGCGGTCTCCTGCGACACGGAGGCGCCGGTGGACTGCACGGGGGACAAGGATCTCTTCAACCTTCTCATGCGCACGGCGATCGAGAAGTTCTCCGACCTCCACTTCTACCGCTTCGGCCGCCCCGTCGCCGTGCCGGGGAGCCCCATGGAGTGCGACCTCGCATGGCGCTTCCGCCCCGCCGAGGACACCAACGGCCGCACCACCTACTACAAGGACTACCG CCGCTTCACGCTCACCCGCGACGTCAACACCTGCAACCTCGTCGTCGGCAATGTGGGCGAGTACCACTCCGGCACCGGCGCCAAGCGCAGCGGCCGCCGCAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACCGGTCACCGACTTTGTGCCGGCCAAGACGCAGATGAG GCTCGATGAGAACGCTGCCAATGCAGACACCACGGCCGCCTCCGAGCCGGAGCTAG TTGTCG GTGAAGCTGTCAATGACAATTTACC GGTG GTCGAATCTGAGTC TGAATTCA GCCGCGGAAAGTATC TGATCTACATGGGCGGTGGTGAGAGATGCAAGAGCATGAACCACTACGTTTGGGGATTCTTGTGTGCACTTGGTGAGGCACAGTACTTGAACCGGACACTTTGTATGGACCTTAATGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB635632             [                                                                                                                                                                                                                                                                                                                                                                                                                AACTCCTCCGATGCCGCCGCCGCCGCGGAGGCCACCGTCGTCGCCGAGGCCGTCCCGTTCATCAAGCTCGAGGACGTCGCGACCAAGGAGGAGTCGTCGGGGGCGGAGCGGGCCGTCACCGTTGACACCGACGCCAGCTCGGACGCGGGCGCCGCGGCGGAGGAGAACCCCATCGTCGAGGCGGTCTCCTGCGACACGGAGGCGCCGGTGGACTGCACGGGGGACAAGGATCTCTTCAACCTTCTCATGCGCACGGCGATCGAGAAGTTCTCCGACCTCCACTTCTACCGCTTCGGCCGCCCCGTCGCCGTGCCGGGGAGCCCCATGGAGTGCGACCTCGCATGGCGCTTCCGCCCCGCCGAGGACACCAACGGCCGCACCACCTACTACAAGGACTACCG CCGCTTCACGCTCACCCGCGACGTCAACACCTGCAACCTCGTCGTCGGCAATGTGGGCGAGTACCACTCCGGCACCGGCGCCAAGCGCAGCGGCCGCCGCAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACCGGTCACCGACTTTGTGCCGGCCAAGACGCAGATGAG GCTCGATGAGAACGCTGCCAATGCAGACACCACGGCCGCCTCCGAGCCGGAGCTAG TTGTCG GTGAAGCTGTCAATGACAATTTACC GGTG GTCGAATCTGAGTC TGAATTCA GCCGCGGAAAGTATC TGATCTACATGGGCGGTGGTGAGAGATGCAAGAGCATGAACCACTACGTTTGGGGATTCTTGTGTGCACTTGGTGAGGCACAGTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU161890             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGGAGCGGGCCGTNACCGTTGACACCGACGCCAGNTCGGACGCGGGCGCCGCGGCGGAGGAGAACCCCATCGTCGAGGCGGTCTCCTGCGACACGGAGGCGCCGGTGGACTGCACGGGGGACAAGGATCTCTTCAACCTGCTCATGCGCACGGCGATCGAGAAGTTCTCCGACCTCCACTTCTACCGCTTCGGCCGCCCCGTCGCCGTGCCGGGGAGCCCCATGGAGTGCGACCTCGCATGGCGCTTCCGCCCCGCCGAGGACACCAACGGCCGCACCACCTACTACAAGGACTACCGNCCGCTTCACGCTCACCCGCGACGTCAACACCTGCAACCTCGTCGTCGGCAATGTGGGCGAGTACCACTCCGGCACCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BI810337             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTCACCGACTTTGTGCCGGCCAAGACGCAGATGAGTGCTCGATGAGAACGCTGCCAATGCAGACACCACTGGCG CTCCGA CCGGAGCTAGTTTGTCGTGTGAAGCTGTCAATGACAATTTACCTGGTGTGTCGAATCTGAGTCTTGAATTCACGCCGCGGAAAGTATCTTGATCTACATGGGCGtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL D43564               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AATTCA GCCGCGGAAAGTATC TCATCTACATGGGCGGTGGTGAGAGATGCAAGAGCATGAACCACTACGTTTGGGGATTCTTGTGTGCACTTGGTGAGGCACAGTACTTGAACCGGACACTTGTTATGGACCTTAATGTGTGCCTCAATTCACGGTATACTTCAAGTGGCAAGGATGAAGAGAGAGATTTTAGGCTCTACTTTGATTTTGAGCACTTGAAGCAATCAGCATCGGTCATTGACCAGAGCCAGTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB635633             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGAATGTTGAGCCTGATAACTTCTGGTCTCGTGTATGTGAGGGTGAGACGGAGGCAGTGATCAAGCGCCCATGGTATTTATTGTGGAAATCGCGTCGATTGATGGAGATCGTGTCTGCCATTTCCTCCCGGATGGATTGGGACTTTGATTCAGTCCATGTTGTGAGGGGGGAGAAAGCCCAGAACAAACAGTTGTGGCCAAATCTTGATAGAGATACTTCTCCAGATAGTCTCCTTACGACACTTAATGATAAGGTCGGTGCTGGCCGGCATTTGTACATTGCAACCAATGAACCCGATAAATCATTCTTTGACCCAATGAAGGGTAAGTATCGAACACACTTCCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGTGGTACACTGAAACAAAGGAGCTGAGCAATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTTGACA CTGAGGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTA CTCGTGATTGCAAGAATGGTGTCAATACATGCCCTGCTTCCTCATGAACATCTCGTGAATTATGTGCGCTGAGTCTCAAATGTTGTGCTTGATATAATATTTTTGAACTACCGTGTATCTTAAGCACATATGGCTTTGTTGTAGCTAGCTAGTTCATATGAGTGTTTCTGCAGGACACTGTTGTTGTATTTTATCACCCAGAACACATTAGTTTGTTGAATTCATGCATCGGCACTTTGTAGTTTGTACTAATTGCTTAAACAAGAAGTTTGCTCAATGTTACCATGTTAAGCCTCAAAAAAAAAAAAGA]
[-] EMBL CB627991             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGTTGAGCCTGATAACTTCTGGTCTCGTGTATGTGAGGGTGAGACGGAGGCAGTGATCAAGCGCCCATGGTATTTATTGTGGAAATCGCGTCGATTGATGGAGATCGTGTCTGCCATTTCCTCCCGGATGGATTGGGACTTTGATTCAGTCCATGTTGTGAGGGGGGAGAAAGCCCAGAACAAACAGTTGTGGCCAAATCTTGATAGAGATACTTCTCCAGATAGTCTCCTTACGACACTTAATGATAAGGTCGGTGCTGGCCGGCATTTGTACATTGCAACCAATGAACCCGATAAATCATTCTTTGACCCAATGAAGGGTAAGTATCGAACACACTTCCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGTGGTACACTGAAACAAAGGAGCTGAGCAATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTTGACA CTGAGGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTA CTCGTGATTGCAAGAATGGTGTCAATACATGCCCTGCTTCCTCATGAACATCTCGTGAATTATGTGCGCTGAGTCTCAAATGTTGTGCTTGATATAATATTTTTGAACTACCGTGTATCTTAAGCACATATGGCTTTGTTGTAGCTAGCTAGTTCATATGAGTGTTTCTGCAGGACACTGTTGTTGTATTTTATCACCCAGAACACATTAGTTTGTTGAATTCATGCATCGGCACTTTGTAGTTTGTACTAATTGCTTAAACAAGAAATTTGCTCAATGTTACCATG                       ]
[+] EMBL BI813351             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ccgaTCAGTCCATGTTTTGA GGGGGAGAAA CCCAGAACAAACAG TGT GCC AATCTTGATAGAGATACTTCTCCAGATAGTCTCCTTACGACACTTAATGATAAGGTCGGTGCGTGCCGGCATTTGTACCTTGCAACC ATGAACCCGATAAATCATTCTTTGACCC ATGAAGGGTAAGTATCGAACACACTTCCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGTGGTACACTGAAAC AAGGAGCTGAGC ATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTTGACACCTGAGGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTACCTCGTGATTGCAAGAATGGTGTC ATACATGCCCTGCTTCCTCATGAACATCTCGTGAATTATGTGCGCTGAGTCTCAAATGTTGTGCTTGATATAATATTTTTGAACTACCGTGTATCTTAAGCACATATGGCTTTGTTGTAGCTAGCTAGTTCATATGAGTGTTTCTGCAGGACACTGTTGTTGTATTTTATCACCCAGAACACATTAGTTTGTTGAATTCATGCATCGGCACTTTGTAGTTTGTACTAAaaaaa                                                     ]
[+] EMBL C98237               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              cgCCGATAAATCATTCTTTGACCCAATGAAGGGTAAGTATCGAACACACTTCCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGTGGTACACTGAAACAAAGGAGCTGAGCAATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTTGACA CTGAGGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTA CTCGTGATTGCAAGAATGGTGTCAATACATGCCCTGCTTCCTCATGAACATCTCGTGAATTATGTGCGCTGAGTCTCAAATGTTGTGCTTGATATAATATTTTTGAACTACCGTGTATCTTAAGCACATATGGCTTTGTTGTAGCTAGCTAGTTCATATGAGTGTTTCTGCAGGACACTGTTGTTGTATTTTATCACCCAGAACACATTAGTTTGTTGAATTCATGCATCGGCACTTTGTAGTTTGTACTAATTGCTTAAACAAGAAATTTGCTCAATGTTACCAaaaaa                    ]
[+] EMBL OS1286A              [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CATTCTTTGACCCAATGAAGGGTAAGTATCGAACACACTTCCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGTGGTACACTGAAACAAAGGAGCTGAGCAATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTTGACA CTGAGGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTA CTCGTGATTGCAAGAATGGTGTCAATACATGCCCTGCTTCCTCATGAACATCTCGTGAATTATGTGCGCTGAGTCTCAAATGTTGTGCTTGATATAATATTTTTGAACTACCGTGTATCTTAAGCACATATGGCTTTGTTGTAGCTAGCTAGT                                                                                                                                                             ]




>consensus_13423#0
CTTGTCGGCGACTCCTCCCACTCCCAGATCCCCACCTCGCTCTCACTCCCCCACTCTTCC
CCCCTCGCCGCGGCGGCCAGATCCGGGCGGCGGAATGCTGGGCCGGGCGGGGGCGCTGTC
CGCGGCGCGGTGGCGCGGCGGCGCCGGGACCGGGACCGGGATCGGGATCGACCTGCGCGC
CGCGCTGCGCTCCGGGGGCAACCTCCTCTTCGCGCTCTTCGTGGCGGCCGTCCTCGCCTT
CACCCTCCTCGCCGCGGTCCACAGCCCCGACGACCCGCTCCTCCACCCCTCATCGCACCA
GCTCACCGCGTTCCTCACCTCCGCCACCTCCAACTCCACCTTCCTCGCCGACGACTCCGT
CCTCCGCACCGGCGAGGACTTCGCCGCCGCCATCGGCGCCAACTCCTCCGATGCCGCCGC
CGCCGCGGAGGCCACCGTCGTCGCCGAGGCCGTCCCGTTCATCAAGCTCGAGGACGTCGC
GACCAAGGAGGAGTCGTCGGGGGCGGAGCGGGCCGTCACCGTTGACACCGACGCCAGCTC
GGACGCGGGCGCCGCGGCGGAGGAGAACCCCATCGTCGAGGCGGTCTCCTGCGACACGGA
GGCGCCGGTGGACTGCACGGGGGACAAGGATCTCTTCAACCTGCTCATGCGCACGGCGAT
CGAGAAGTTCTCCGACCTCCACTTCTACCGCTTCGGCCGCCCCGTCGCCGTGCCGGGGAG
CCCCATGGAGTGCGACCTCGCATGGCGCTTCCGCCCCGCCGAGGACACCAACGGCCGCAC
CACCTACTACAAGGACTACCGCCGCTTCACGCTCACCCGCGACGTCAACACCTGCAACCT
CGTCGTCGGCAATGTGGGCGAGTACCACTCCGGCACCGGCGCCAAGCGCAGCGGCCGCCG
CAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACCGGTCACCGACTTTGTGCCGGC
CAAGACGCAGATGAGGCTCGATGAGAACGCTGCCAATGCAGACACCACGGCCGCCTCCGA
GCCGGAGCTAGTTGTCGGTGAAGCTGTCAATGACAATTTACCGGTGGTCGAATCTGAGTC
TGAATTCAGCCGCGGAAAGTATCTCATCTACATGGGCGGTGGTGAGAGATGCAAGAGCAT
GAACCACTACGTTTGGGGATTCTTGTGTGCACTTGGTGAGGCACAGTACTTGAACCGGAC
ACTTGTTATGGACCTTAATGTGTGCCTCAATTCACGGTATACTTCAAGTGGCAAGGATGA
AGAGAGAGATTTTAGGCTCTACTTTGATTTTGAGCACTTGAAGCAATCAGCATCGGTCAT
TGACCAGAGCCAGTTCTGGACAGATTGGGGGAAGTGGCACAAGAAGGATAGACTGAAGAA
TCACTACACTGAAGACATCAAGGTGACCCCGATGCAACTTCGTGACGTCAAGGACACACT
GATCATGAGGAAGTTTGGGAATGTTGAGCCTGATAACTTCTGGTCTCGTGTATGTGAGGG
TGAGACGGAGGCAGTGATCAAGCGCCCATGGTATTTATTGTGGAAATCGCGTCGATTGAT
GGAGATCGTGTCTGCCATTTCCTCCCGGATGGATTGGGACTTTGATTCAGTCCATGTTGT
GAGGGGGGAGAAAGCCCAGAACAAACAGTTGTGGCCAAATCTTGATAGAGATACTTCTCC
AGATAGTCTCCTTACGACACTTAATGATAAGGTCGGTGCTGGCCGGCATTTGTACATTGC
AACCAATGAACCCGATAAATCATTCTTTGACCCAATGAAGGGTAAGTATCGAACACACTT
CCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGTGGTACACTGAAACAAAGGA
GCTGAGCAATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTTGACACTGA
GGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTACTCGTGATTGCAA
GAATGGTGTCAATACATGCCCTGCTTCCTCATGAACATCTCGTGAATTATGTGCGCTGAG
TCTCAAATGTTGTGCTTGATATAATATTTTTGAACTACCGTGTATCTTAAGCACATATGG
CTTTGTTGTAGCTAGCTAGTTCATATGAGTGTTTCTGCAGGACACTGTTGTTGTATTTTA
TCACCCAGAACACATTAGTTTGTTGAATTCATGCATCGGCACTTTGTAGTTTGTACTAAT
TGCTTAAACAAGAAATTTGCTCAATGTTACCATGTTAAGCCTCTATTCTGAAAAAGA

consensusID : consensus_13423#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence

                              [GGAATAAGCTTGCGGCCGCCGCAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACCGGTCACCGACTTTGTGCCGGCCAAGACGCAGATGAGGCTCGATGAGAACGCTGCCAATGCAGACACCACGGCCGCCTCCGAGCCGGAGCTAGTTGTCGGTGAAGCTGTCAATGACAATTTACCGGTGGTCGA]

[+] EMBL BI305509             [GGAATAAGCTTGCGGCCGCCGCAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACCGGTCACCGACTTTGTGCCGGCCAAGACGCAGATGAGGCTCGATGAGAACGCTGCCAATGCAGACACCACGGCCGCCTCCGAGCCGGAGCTAGTTGTCGGTGAAGCTGTCAATGACAATTTACCGGTGGTCGA]




>consensus_13423#1
GGAATAAGCTTGCGGCCGCCGCAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACC
GGTCACCGACTTTGTGCCGGCCAAGACGCAGATGAGGCTCGATGAGAACGCTGCCAATGC
AGACACCACGGCCGCCTCCGAGCCGGAGCTAGTTGTCGGTGAAGCTGTCAATGACAATTT
ACCGGTGGTCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13423#0      CTTGTCGGCGACTCCTCCCACTCCCAGATCCCCACCTCGCTCTCACTCCCCCACTCTTCC 60
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CCCCTCGCCGCGGCGGCCAGATCCGGGCGGCGGAATGCTGGGCCGGGCGGGGGCGCTGTC 120
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CGCGGCGCGGTGGCGCGGCGGCGCCGGGACCGGGACCGGGATCGGGATCGACCTGCGCGC 180
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CGCGCTGCGCTCCGGGGGCAACCTCCTCTTCGCGCTCTTCGTGGCGGCCGTCCTCGCCTT 240
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CACCCTCCTCGCCGCGGTCCACAGCCCCGACGACCCGCTCCTCCACCCCTCATCGCACCA 300
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      GCTCACCGCGTTCCTCACCTCCGCCACCTCCAACTCCACCTTCCTCGCCGACGACTCCGT 360
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CCTCCGCACCGGCGAGGACTTCGCCGCCGCCATCGGCGCCAACTCCTCCGATGCCGCCGC 420
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CGCCGCGGAGGCCACCGTCGTCGCCGAGGCCGTCCCGTTCATCAAGCTCGAGGACGTCGC 480
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      GACCAAGGAGGAGTCGTCGGGGGCGGAGCGGGCCGTCACCGTTGACACCGACGCCAGCTC 540
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      GGACGCGGGCGCCGCGGCGGAGGAGAACCCCATCGTCGAGGCGGTCTCCTGCGACACGGA 600
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      GGCGCCGGTGGACTGCACGGGGGACAAGGATCTCTTCAACCTGCTCATGCGCACGGCGAT 660
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CGAGAAGTTCTCCGACCTCCACTTCTACCGCTTCGGCCGCCCCGTCGCCGTGCCGGGGAG 720
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CCCCATGGAGTGCGACCTCGCATGGCGCTTCCGCCCCGCCGAGGACACCAACGGCCGCAC 780
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CACCTACTACAAGGACTACCGCCGCTTCACGCTCACCCGCGACGTCAACACCTGCAACCT 840
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CGTCGTCGGCAATGTGGGCGAGTACCACTCCGGCACCGGCGCCAAGCGCAGCGGCCGCCG 900
consensus_13423#1      --------------------------------------GGAATAAGC-TTGCGGCCGCCG 21
                                                             *    ****   **********

consensus_13423#0      CAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACCGGTCACCGACTTTGTGCCGGC 960
consensus_13423#1      CAAGGGCAAGAAGGGGAAGAAGGGCAAGCGCGAGGCACCGGTCACCGACTTTGTGCCGGC 81
                       ************************************************************

consensus_13423#0      CAAGACGCAGATGAGGCTCGATGAGAACGCTGCCAATGCAGACACCACGGCCGCCTCCGA 1020
consensus_13423#1      CAAGACGCAGATGAGGCTCGATGAGAACGCTGCCAATGCAGACACCACGGCCGCCTCCGA 141
                       ************************************************************

consensus_13423#0      GCCGGAGCTAGTTGTCGGTGAAGCTGTCAATGACAATTTACCGGTGGTCGAATCTGAGTC 1080
consensus_13423#1      GCCGGAGCTAGTTGTCGGTGAAGCTGTCAATGACAATTTACCGGTGGTCGA--------- 192
                       ***************************************************         

consensus_13423#0      TGAATTCAGCCGCGGAAAGTATCTCATCTACATGGGCGGTGGTGAGAGATGCAAGAGCAT 1140
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      GAACCACTACGTTTGGGGATTCTTGTGTGCACTTGGTGAGGCACAGTACTTGAACCGGAC 1200
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      ACTTGTTATGGACCTTAATGTGTGCCTCAATTCACGGTATACTTCAAGTGGCAAGGATGA 1260
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      AGAGAGAGATTTTAGGCTCTACTTTGATTTTGAGCACTTGAAGCAATCAGCATCGGTCAT 1320
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      TGACCAGAGCCAGTTCTGGACAGATTGGGGGAAGTGGCACAAGAAGGATAGACTGAAGAA 1380
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      TCACTACACTGAAGACATCAAGGTGACCCCGATGCAACTTCGTGACGTCAAGGACACACT 1440
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      GATCATGAGGAAGTTTGGGAATGTTGAGCCTGATAACTTCTGGTCTCGTGTATGTGAGGG 1500
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      TGAGACGGAGGCAGTGATCAAGCGCCCATGGTATTTATTGTGGAAATCGCGTCGATTGAT 1560
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      GGAGATCGTGTCTGCCATTTCCTCCCGGATGGATTGGGACTTTGATTCAGTCCATGTTGT 1620
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      GAGGGGGGAGAAAGCCCAGAACAAACAGTTGTGGCCAAATCTTGATAGAGATACTTCTCC 1680
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      AGATAGTCTCCTTACGACACTTAATGATAAGGTCGGTGCTGGCCGGCATTTGTACATTGC 1740
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      AACCAATGAACCCGATAAATCATTCTTTGACCCAATGAAGGGTAAGTATCGAACACACTT 1800
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CCTGGATGACTTCAAGGATTTATGGGATGAGAACAGCGAGTGGTACACTGAAACAAAGGA 1860
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      GCTGAGCAATGGTAATGCTGTTGAATTCGATGGATACATGAGGGTTGCAGTTGACACTGA 1920
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      GGTGTTCCTTCGGGGGAAGAGGAAATTGGAGACATTCAGTGATCTTACTCGTGATTGCAA 1980
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      GAATGGTGTCAATACATGCCCTGCTTCCTCATGAACATCTCGTGAATTATGTGCGCTGAG 2040
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      TCTCAAATGTTGTGCTTGATATAATATTTTTGAACTACCGTGTATCTTAAGCACATATGG 2100
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      CTTTGTTGTAGCTAGCTAGTTCATATGAGTGTTTCTGCAGGACACTGTTGTTGTATTTTA 2160
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      TCACCCAGAACACATTAGTTTGTTGAATTCATGCATCGGCACTTTGTAGTTTGTACTAAT 2220
consensus_13423#1      ------------------------------------------------------------
                                                                                   

consensus_13423#0      TGCTTAAACAAGAAATTTGCTCAATGTTACCATGTTAAGCCTCTATTCTGAAAAAGA 2277
consensus_13423#1      ---------------------------------------------------------