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Oryza sativa
cluster # 13438 cluster # 13438       Sequences # 13       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13438#0 length = 1032 sequences # 4  
consensus_13438#1 length = 807 sequences # 4  
consensus_13438#2 length = 773 sequences # 2  
consensus_13438#3 length = 562 sequences # 2  
consensus_13438#4 length = 431 sequences # 1  

consensusID : consensus_13438#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1032
fasta sequence
                              [AGAGCTACCCCCACCAACCGGAGTATCGGACTCCGGAAGCCGGAAGNGACGGCGCCGCCCGATATGGAGGCGGAGTCGGCGGCGGCGAGGCAGGCGAAGGAGTCGCTGGAGCTGGCGTTCCAGATGTCTCAGATCCTCGACACCGGCCTCGACCGCCACACGCTGTCGCTGCTCATGGCGCTCTGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCCGCGGCTCCTCCGACCACCGCCGCCGCCGCACCCAGCCCCGCGTCCAACGCCACCGCGGCGCCGTCCGCAAAAGCCGCGTCGCTTTTCCCCTCCGGTCTTCGCAAACCCTAGGGTCGGGGCCAGCGAAGATGAGGGCGGAGGCGAGGTGCACAGCGGTGGCCGGAGATGTCGCAGAAGCGGCAGCTGGAGGAGAGCAGCGGTAGCAGAGCGGAGGCATGGGGGCCCCTGGCCCAGCCAAATCTGGGGCTGGGAGCTCGTCGCCGCCCCACCGCTACGGGGAGCCCAAGCATCAGATGGTCCCTGCCCTCCGCGAGATGATCACGGAGGTGATGCAGAAAAGCAGCATTGAAAAGTTGTTCATGGCTATTGAGCCCCTCATCCGAAGAATGGTGAAAGAAGAAATCGAGTCAGCGTTTGCAAATCATGCCATTATGATGGCAAGCTCCAAGATTGAAGGAGAGAGCTCCTTAAGCATAACTATTGCTCTAGTTGACACTGTTACCAGAGAAGTTGTAGCATCAGGCGATGAGTCCCTGATGAAAGTTGAAATAGTAGTTTTAGAGGGGGATTTTGAAGGTGGAGAAGGCGATGACTGGACAGCTCAGGAGTTTAACAATAACATTATTAGAGCAAGGGAAGGCAAATGAACCTTGCTTCTGGGGACATTTTTGTTGGCCTTACTAACGGCATCAGTACAATGGGGGAACTATCATTCACACATAATTCCAGTTGGACATGCAGCCATGATAGTGCTATTCAGCAAAATATATGGATATATTGGCCCTCTTAATC]

[+] EMBL OSR17551A            [AGAGCTACCCCCACCAACCGGAGTATCGGACTCCGGAAGCCGGAAGNGACGGCGCCGCCCGATATGGAGGCGGAGTCGGCGGCGGCGAGGCAGGCGAAGGAGTCGCTGGAGCTGGCGTTCCAGATGTCTCAGATCCTCGACACCGGCCTCGACCGCCACACGCTGTCGCTGCTCATGGCGCTCTGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCNAGCTCTCCTCCGCGGCTCCTCCGACCACCGCCGCCGNCGCACCCAGCCCCGCGTCCAACGGCACCGNGGCGCCGTCCGAAAAAGCCGNGTCGGTTTT TCCTTCGGTCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU176422             [           CACCAACCGGAGTATCGGACTCCGGAAGCCGGAAGCGACGGCGCCGCCCGATATGGAGGCGGAGTCGGCGGCGGCGAGGCAGGCGAAGGAGTCGCTGGAGCTGGCGTTCCAGATGTCTCAGATCCTCGACACCGGCCTCGACCGCCACACGCTGTCGCTGCTCATGGCGCTCTGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCCGCGGCTCCTCCGACCACCGCCGCCGCCGCACCCAGCCCCGCGTCCAACGCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB671452             [                                                                                                                                                                                                             AGGCCCCCCCCGCCCTCGTCCGCGAGCTCTCCTCCGCGGCTCCTCCGACCACCGCCGCCGCCGCACCCAGCCCCGCGTCCAACGCCACCGCGGCGCCGTCCGCAAAAGCCGCGTCGCTTTTCCCCTCCGGTCTTCGCAAACCCTAGGGTCGGGGCCAGCGAAGATGAGGGCGGAGGCGAGGTGCACAGCGGTGGCCGGAGATGTCGCAGAAGCGGCAGCTGGAGGAGAGCAGCGGTAGCAGAGCGGAGGCATGGGGGCCCCTGGCCCAGCCAAATCTGGGGCTGGGAGCTCGTCGCCGCCCCACCGCTACGGGGAGCCCAAGCATCAGATGGTCCCTGCCCTCCGCGAGATGATCACGGAGGTGATGCAGAAAAGCAGCATTGAAAAGTTGTTCATGGCTATTGAGCCCCTCATCCGAAGAATGGTGAAAGAAGAAATCGAGTCAGCGTTTGCAAATCATGCCATTATGATGGCAAGCTCCAAGATTGAAGGAGAGAGCTCCTTAAGCATAACTATTGCTCTAGTTGACACTGTTACCAGAGAAGTTGTAGCATCAGGCGATGAGTCCCTGATGAAAGTTGAAATAGTAGTTTTAGAGGGGGATTTTGAAGGTGGAGAAGGCGATGACTGGACAGCTCAGGAGTTTAACAATAACATTATTAGAGCAAGGGAAGGCAAATGAACCTTGCTTCTGGGGACATTTTTGTTGGCCTTACTAACGGCATCAGTACAATGGGGGAACTATCATTCACACATAATTCCAGTTGGACATGCAGCCATGATAGTGCTATTCAGCAAAATATATGGATATATTGGCCCTCTTAATC]
[+] EMBL CB671454             [                                                                                                                                                                                                             AGGCCCCCTCCGCCCTCGTCCGCGAGCTCTCCTCCGCGGCTCCTCCGACCACCGCCGCCGCCGCACCCAGCCCCGCGTCCAACGCCACCGCGGCGCCGTCCGCAAAAGCCGCGTCGCTTGTCCCCTCCGGTCTTCGCAAACCCTACGGTCAGGGCCAGCGAATATGAGGGCGGAGGCGAGGTGCACAGCGGTGGACGGAGATGTCGCACAAGCGGCAGCTGGAGGAGAGCAGCGGTAGCAGAGCGGAGGCATGGGGGCCCCTGGCCCAGCCAAATCTGGGGCTGGGAGCTCGTCGCCGCCCCACCGCTACGGGGAGCCCAAGCATCAGATGGTCCCTGCCCTCCGCGAGATGATCACGGAGGTGATGCACAAAAGCAGCATTGAAAAGTTGTTCATGGCTATTGAGCCCCTCATCCGAAGAATGGTGAAAGAAGAAATCGAGTCAGCGTTTGCAAATCATGCCATTATGATGGCAAGCTCCAAGATTGAAGGAGAGAGCTCCTTAAGCATAACTATTGCTCTAGTTGACACTGGTACCAGAGAAGTTGTAGCATCAGGCGATGAGTCCCTGATGAAAGTTGAAATAGTAGTTTTAGAGGGGGATTTTGAAGGTGGAGAAGGCGATGACTGGACAGCTCACGAGTTTAACAATAACATTATTACAGCAAGGGAAGGCAAATGAACCTTGCTTCTGGGGACATTTTTGTTGGCCTTACTAGCGGCATCAGTACAATGGGGGAACTATCATTCACACATAATTCCAGTTGGACATGCAGCCATGATAGTGCTATTCAGCAAAATA                         ]


>consensus_13438#0 AGAGCTACCCCCACCAACCGGAGTATCGGACTCCGGAAGCCGGAAGNGACGGCGCCGCCC GATATGGAGGCGGAGTCGGCGGCGGCGAGGCAGGCGAAGGAGTCGCTGGAGCTGGCGTTC CAGATGTCTCAGATCCTCGACACCGGCCTCGACCGCCACACGCTGTCGCTGCTCATGGCG CTCTGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCC GCGGCTCCTCCGACCACCGCCGCCGCCGCACCCAGCCCCGCGTCCAACGCCACCGCGGCG CCGTCCGCAAAAGCCGCGTCGCTTTTCCCCTCCGGTCTTCGCAAACCCTAGGGTCGGGGC CAGCGAAGATGAGGGCGGAGGCGAGGTGCACAGCGGTGGCCGGAGATGTCGCAGAAGCGG CAGCTGGAGGAGAGCAGCGGTAGCAGAGCGGAGGCATGGGGGCCCCTGGCCCAGCCAAAT CTGGGGCTGGGAGCTCGTCGCCGCCCCACCGCTACGGGGAGCCCAAGCATCAGATGGTCC CTGCCCTCCGCGAGATGATCACGGAGGTGATGCAGAAAAGCAGCATTGAAAAGTTGTTCA TGGCTATTGAGCCCCTCATCCGAAGAATGGTGAAAGAAGAAATCGAGTCAGCGTTTGCAA ATCATGCCATTATGATGGCAAGCTCCAAGATTGAAGGAGAGAGCTCCTTAAGCATAACTA TTGCTCTAGTTGACACTGTTACCAGAGAAGTTGTAGCATCAGGCGATGAGTCCCTGATGA AAGTTGAAATAGTAGTTTTAGAGGGGGATTTTGAAGGTGGAGAAGGCGATGACTGGACAG CTCAGGAGTTTAACAATAACATTATTAGAGCAAGGGAAGGCAAATGAACCTTGCTTCTGG GGACATTTTTGTTGGCCTTACTAACGGCATCAGTACAATGGGGGAACTATCATTCACACA TAATTCCAGTTGGACATGCAGCCATGATAGTGCTATTCAGCAAAATATATGGATATATTG GCCCTCTTAATC



consensusID : consensus_13438#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 807
fasta sequence
                              [AGGTTGGCCGCGCCACCCTCAACTGCGACGGCAACCTTGTCTTCCTCCTCTACCGCGAAGGTCCAGGCCCACCACCCACCGGAGGCCGGAGGTGATCGATGGCGCCGCACGAGACG-GAGACGGGGACGG-AGTCTGCGGCGGCAAGGCAGGCGAAGGAG-TCGCTGGAGCTGGCGTT-CCAGATGTCCCAGATCCTGGACACCGGCCTCGACCGCCACACGCTCTCGCTGCTCATGGCGCTCTGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCGGCGGCTCCTCCGACCGCCGCAACTACTCCCGCGTCCACCGCCACCGCCGTGCCGTCAACAAAAGCCGCCTCGCTTTTCCCCTCCGGTCTTCGCCAACCCTAGGGTAGTGAAAACCGGTGGAACCAATTTGCTTGATCGGTAGAGCAGACTCGAGATTTGATTGCTGGAAGAAAGGTATTGTCAAACTTAAGGAAGATGCTAAATCTTGCTGTAGAATGCATTTCTGATGCTGTGGTGGCCTGTTTCCCCAAGGAAGGTGTGGTTCATGGAACGCTGCGTGATTTGCTTGAGTTGTGGAAGATAAGAGTTTAGTAATCGTGGGAACGTTGCCTTTCCTATTTCCAATAGCCAATTTTGCCTATTATTAATTATCCTCTCTTGACCTAGAAGTCCTTTGCTTTGTCATGTGCTTATCCAAGAAGGGATCTGTCATCGCCATTGGTCGAACTCTCATTTTCAGATAATAATTGAAAGCAATGAGTGATATCTCTAAAAAACCTGGTTCAAAAAA]

[+] EMBL AK107787             [AGGTTGGCCGCGCCACCCTCAACTGCGACGGCAACCTTGTCTTCCTCCTCTACCGCGAAGGTCCAGGCCCACCACCCACCGGAGGCCGGAGGTGATCGATGGCGCCGCACGAGACG GAGACGGGGACGG AGTCTGCGGCGGCAAGGCAGGCGAAGGAG TCGCTGGAGCTGGCGTT CCAGATGTCCCAGATCCTGGACACCGGCCTCGACCGCCACACGCTCTCGCTGCTCATGGCGCTCTGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCGGCGGCTCCTCCGACCGCCGCAACTACTCCCGCGTCCACCGCCACCGCCGTGCCGTCAACAAAAGCCGCCTCGCTTTTCCCCTCCGGTCTTCGCCAACCCTAGGGTAGTGAAAACCGGTGGAACCAATTTGCTTGATCGGTAGAGCAGACTCGAGATTTGATTGCTGGAAGAAAGGTATTGTCAAACTTAAGGAAGATGCTAAATCTTGCTGTAGAATGCATTTCTGATGCTGTGGTGGCCTGTTTCCCCGAGGAAGGTGTGGTTCATGGAACGCTGCGTGATTTGCTTGAGTTGTGGAAGATAAGAGTTTAGTAATCGTGGGAACGTTGCCTTTCCTATTTCCAATAGCCAATTgta                                                                                                                                                          ]
[+] EMBL C73366               [                                                          AGGTCCAGGCCCACCACCCACCGGAGGCCGGAGGTGATCGATGGCGCCGCACGANACG GAGACGGGGACGG AGTCTGCGGCGGCAAGGCAGGCGAAGGAG TCGCTGGAGCTGGCGTT CCANATGTCCCANATCCTGGACACCGGCCTCGACCGCCACANGCTCTCGCTGCTCATGGCGCTCTG NACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCAAGCTCTCCTCGGCGGCTCCTCCGACCGCCGCAACTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU094282             [                                                                                                               AGACGNAAGACGGGGACGGAAGTTTGCGNCGGCAAGGCAGCCGAAGGAGTTCGCTGAAGCTGGCGTTCCCAGATGTCCCAGATCCTGGACACCGGCTTCGACCGCCACACGCTCTCGCTGCTCATGGCGCTCTGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCGGCGGCTCCTCCGACCGCCGCAACTACTCCCGCGTCCACCGCCACCGCCGTGCCGTCAACAAAAGCCGCCTCGCTTTTCCCCTCCGGTCTTCGCCAACCCTAGGGTAGTGAAAACCGGTGGAACCAATTTGCTTGATCGGTAGAGCAGACTCGAGATTTGATTGCTGGAAGAAAGGTATTGTCAAACTTAAGGAAGATGCTAAATCTTGCTGTAGAATGCATTTCTGATGCTGTGGTGGCCTGTTTCCCCAAGGAAGGTGTGGTTCATGGAACGCTGCGTGATTTGCTTGAGTTGTGGAAGATAAGAGTTTAGTAATCGTGGGAACGTTGCCTTTCCTATTTCCAATAGCCAATTTTGCCTATTATTAATTATCCTCTCTTGACCTAGAAGTCCTTTGCTTTGTCATGTGCTTATCCAAGAAGGGATCTGTCATCGCCATTGGTCGAACTCTCATTTTCAGATAATAATTGAAAGCAATGAGTGATATCTCTAAAAAA              ]
[+] EMBL AU166760             [                                                                                                                                                                                                                                                                                                                                                                                   GCTTTTCCCCTCCGGTCTTCGCCAACCCTAGGGTAGTGAAAACCGGTGGAACCAATTTGCTTGATCGGTAGAGCAGACTCGAGATTTGATTGCTGGAAGAAAGGTATTGTCAAACTTAAGGAAGATGCTAAATCTTGCTGTAGAATGCATTTCTGATGCTGTGGTGGCCTGTTTCCCCAAGGAAGGTGTGGTTCATGGAACGCTGCGTGATTTGCTTGAGTTGTGGAAGATAAGAGTTTAGTAATCGTGGGAACGTTGCCTTTCCTATTTCCAATAGCCAATTTTGCCTATTATTAATTATCCTCTCTTGACCTAGAAGTCCTTTGCTTTGTCATGTGCTTATCCAAGAAGGGATCTGTCATCGCCATTGGTCGAACTCTCATTTTCAGATAATAATTGAAAGCAATGAGTGATATCTCTATTCCACCTGGTTCAAAAAA]


>consensus_13438#1 AGGTTGGCCGCGCCACCCTCAACTGCGACGGCAACCTTGTCTTCCTCCTCTACCGCGAAG GTCCAGGCCCACCACCCACCGGAGGCCGGAGGTGATCGATGGCGCCGCACGAGACGGAGA CGGGGACGGAGTCTGCGGCGGCAAGGCAGGCGAAGGAGTCGCTGGAGCTGGCGTTCCAGA TGTCCCAGATCCTGGACACCGGCCTCGACCGCCACACGCTCTCGCTGCTCATGGCGCTCT GCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCGGCGG CTCCTCCGACCGCCGCAACTACTCCCGCGTCCACCGCCACCGCCGTGCCGTCAACAAAAG CCGCCTCGCTTTTCCCCTCCGGTCTTCGCCAACCCTAGGGTAGTGAAAACCGGTGGAACC AATTTGCTTGATCGGTAGAGCAGACTCGAGATTTGATTGCTGGAAGAAAGGTATTGTCAA ACTTAAGGAAGATGCTAAATCTTGCTGTAGAATGCATTTCTGATGCTGTGGTGGCCTGTT TCCCCAAGGAAGGTGTGGTTCATGGAACGCTGCGTGATTTGCTTGAGTTGTGGAAGATAA GAGTTTAGTAATCGTGGGAACGTTGCCTTTCCTATTTCCAATAGCCAATTTTGCCTATTA TTAATTATCCTCTCTTGACCTAGAAGTCCTTTGCTTTGTCATGTGCTTATCCAAGAAGGG ATCTGTCATCGCCATTGGTCGAACTCTCATTTTCAGATAATAATTGAAAGCAATGAGTGA TATCTCTAAAAAACCTGGTTCAAAAAA



consensusID : consensus_13438#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 773
fasta sequence
                              [GAGCTTACCCACCAGGCGCTTTGCGGCCAGCGACGACGAGGACGGAGGCGAGGCGCGCGCCGCGGCCGGAGATGTCGCAGAAGCGGCAGCCGGAGGAGAGCAGCGGCGGCGTCGGCGGAGGCATGGGACCCCCCGTCCCGGCCGAATCCGGGGCCGGGAGTTCCTCGCCGCCCCACCGCCGCGGGGAGCCCAAGCGCCAGAGGGTCCCCGCCCTCCGCGAGGTGATCACGGAGGTGATGCGGAAGAGCAGCATCGAAAAGTTGTTCACGGCTATCGAGCCCCTCATCCGAAGAGTGGTGAAAGAAGAAATCGAGTCAGCGTTTGCAAATCATGCCACTATGATGGCAAGAACTGTCATGGATGTTGTTCCATCTTCATCGAAAAATTTCCAGCTACAGTTCATGACTAAGCTTTCACTTCCAATTTTCACTGGCTCCAAGATTGAAGGGGAGAGCTCCTTAAGTATAACTATTGCTCTAGTTGACACTGTTACCAGAGAAGTTGTAGCATCAGGCGATGAGTCCCTGATGAAAGTTGAAATAGTAGTTTTAGAGGGGGATTTTGAAGGTGGAGAAGGCGATGACTGGACAGCTCAAGAGTTNCACAATAACATTATTAGAGCAAGGGAAGGTAAACGACCCTTGCTTTCTGGAGACATTTTTGTTGGCCTTATTAAAGGCATTGGTGCAGTGGGGGAACTATCATTCACAGATAATTCCAGTTGGACACGCAGCCGTAAGTTCAGGCTAGGTGCAAAAACTGAGGATGGTTCT]

[+] EMBL CB663586             [GAGCTTACCCACCAGGCGCTTTGCGGCCAGCGACGACGAGGACGGAGGCGAGGCGCGCGCCGCGGCCGGAGATGTCGCAGAAGCGGCAGCCGGAGGAGAGCAGCGGCGGCGTCGGCGGAGGCATGGGACCCCCCGTCCCGGCCGAATCCGGGGCCGGGAGTTCCTCGCCGCCCCACCGCCGCGGGGAGCCCAAGCGCCAGAGGGTCCCCGCCCTCCGCGAGGTGATCACGGAGGTGATGCGGAAGAGCAGCATCGAAAAGTTGTTCACGGCTATCGAGCCCCTCATCCGAAGAGTGGTGAAAGAAGAAATCGAGTCAGCGTTTGCAAATCATGCCACTATGATGGCAAGAACTGTCATGGATGTTGTTCCATCTTCATCGAAAAATTTCCAGCTACAGTTCATGACTAAGCTTTCACTTCCAATTTTCACTGGCTCCAAGATTGAAGGGGAGAGCTCCTTAAGTATAACTATTGCTCTAGTTGACACTGTTACCAGAGAAGTTGTAGCATCAGGCGATGAGTCCCTGATGAAAGTTGAAATAGTAGTTTTAGAGGGGGATTTTGAAGGTGGAGAAGGCGATGACTGGACAGCTCAAGAGTTNCACAATAACATTATTAGAGCAAGGGAAGGTAAACGACCCTTGCTTTCTGGAGACATTTTT                                                                                                               ]
[+] EMBL CB628368             [   CTTACCCACCAGGCGCTTTGCGGCCAGCGACGACGAGGACGGAGGCGAGGCGCGCGCCGCGGCCGGAGATGTCGCAGAAGCGGCAGCCGGAGGAGAGCAGCGGCGGCGTCGGCGGAGGCATGGGACCCCCCGTCCCGGCCGAATCCGGGGCCGGGAGTTCCTCGCCGCCCCACCGCCGCGGGGAGCCCAAGCGCCAGAGGGTCCCCGCCCTCCGCGAGGTGATCACGGAGGTGATGCGGAAGAGCAGCATCGAAAAGTTGTTCACGGCTATCGAGCCCCTCATCCGAAGAGTGGTGAAAGAAGAAATCGAGTCAGCGTTTGCAAATCATGCCACTATGATGGCAAGAACTGTCATGGATGTTGTTCCATCTTCATCGAAAAATTTCCAGCTACAGTTCATGACTAAGCTTTCACTTCCAATTTTCACTGGCTCCAAGATTGAAGGGGAGAGCTCCTTAAGTGTAACTATTGCTCTAGTTGACACTGTTACCAGAGAAGTTGTAGCATCAGGCGATGAGTCCCTGATGAAAGTTGAAATAGTAGTTTTAGAGGGGGATTTTGAAGGTGGAGAAGGCGATGACTGGACAGCTCAAGAGTTCAACAATAACATTATTAGAGCAAGGGAAGGTAAACGACCCTTGCTTTCTGGAGACATTTTTGTTGGCCTTATTAAAGGCATTGGTGCAGTGGGGGAACTATCATTCACAGATAATTCCAGTTGGACACGCAGCCGTAAGTTCAGGCTAGGTGCAAAAACTGAGGATGGTTCT]


>consensus_13438#2 GAGCTTACCCACCAGGCGCTTTGCGGCCAGCGACGACGAGGACGGAGGCGAGGCGCGCGC CGCGGCCGGAGATGTCGCAGAAGCGGCAGCCGGAGGAGAGCAGCGGCGGCGTCGGCGGAG GCATGGGACCCCCCGTCCCGGCCGAATCCGGGGCCGGGAGTTCCTCGCCGCCCCACCGCC GCGGGGAGCCCAAGCGCCAGAGGGTCCCCGCCCTCCGCGAGGTGATCACGGAGGTGATGC GGAAGAGCAGCATCGAAAAGTTGTTCACGGCTATCGAGCCCCTCATCCGAAGAGTGGTGA AAGAAGAAATCGAGTCAGCGTTTGCAAATCATGCCACTATGATGGCAAGAACTGTCATGG ATGTTGTTCCATCTTCATCGAAAAATTTCCAGCTACAGTTCATGACTAAGCTTTCACTTC CAATTTTCACTGGCTCCAAGATTGAAGGGGAGAGCTCCTTAAGTATAACTATTGCTCTAG TTGACACTGTTACCAGAGAAGTTGTAGCATCAGGCGATGAGTCCCTGATGAAAGTTGAAA TAGTAGTTTTAGAGGGGGATTTTGAAGGTGGAGAAGGCGATGACTGGACAGCTCAAGAGT TNCACAATAACATTATTAGAGCAAGGGAAGGTAAACGACCCTTGCTTTCTGGAGACATTT TTGTTGGCCTTATTAAAGGCATTGGTGCAGTGGGGGAACTATCATTCACAGATAATTCCA GTTGGACACGCAGCCGTAAGTTCAGGCTAGGTGCAAAAACTGAGGATGGTTCT



consensusID : consensus_13438#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 562
fasta sequence
                              [GGAAGCGACGGCGCCGCCCGATATGGAGGCGGAGTCGGCGGCGGCGAGGCAGGCGAAGGAGTCGCTGGAGCTGGCGTTCCAGATGTCTCAGATCCTCGACACCGGCCTCGACCGCCACACGCTGTCGCTGCTCATGGCGCTCTGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCCGCGGCTCCTCCGACCACCGCCGCCGCCGCACCCAGCCCCGCGTCCAACGCCACCGCGGCGCCGTCCGCAAAAGCCGCGTCGCTTTTCCCCTCCGGTCTTCGCAAACCCTAGGGTTCGTGCCCCCTTCTCTCAGACGAGATCACACTATCACTTGATCCTACATTACGTTGTCTTAGAATGTAAACTAGCGGATCGTTCTGCTCTGTAGATTCGTTTTAGCCGCAACACCTTCCTGGCTTGTATCCTCAAGAGATTATGCACAATTTTTCTATCAGAACTCCTTAATTTTAGGAGATCGTGACATGGATCCGTTCAGAGATATGGGGATATCGGTATGACATGAATATTTGATTGCGGAGACAC]

[+] EMBL AK111129             [GGAAGCGACGGCGCCGCCCGATATGGAGGCGGAGTCGGCGGCGGCGAGGCAGGCGAAGGAGTCGCTGGAGCTGGCGTTCCAGATGTCTCAGATCCTCGACACCGGCCTCGACCGCCACACGCTGTCGCTGCTCATGGCGCTCTGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCCGCGGCTCCTCCGACCACCGCCGCCGCCGCACCCAGCCCCGCGTCCAACGCCACCGCGGCGCCGTCCGCAAAAGCCGCGTCGCTTTTCCCCTCCGGTCTTCGCAAACCCTAGGGTTCGTGCCCCCTTCTCTCAGACGAGATCACACTATCACTTGATCCTACATTACGTTGTCTTAGAATGTAAACTAGCGGATCGTTCTGCTCTGTAGATTCGTTTTAGCCGCAACACCTTCCTGGCTTGTATCCTCAAGAGATTATGCACAATTTTTCTATCAGAACTCCTTAATTTTAGGAGATCGTGACATGGATCCGTTCAGAGATATGGGGATATCGGTATGACATGAATATTTGATTGCGGAGACAC]
[+] EMBL BI801498             [                                                                                                                                                           CCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCCGCGGCTCCTCCGACCACCGCCGCCGCCGCACCCAGCCCCGCGTCCAACGCCACCGCGGC CCGTCCGCAAAA CCGC TCGCTTTTCCCCTCCGGTCTTC C AACCCTAGGGTTCGTGCCCCCTTCTCTCATACGAGATCACACTATCACTTGATCCTACATTACGTTGTCTTAGAATGTAAACTAGCGGATCGTTCTGCTCTGTAGATTCGTTTTAGCCGCAACACCTTCCTGGCTTGTATCCTCAAGAGATTATGCAC ATTTTTCTATCAGAACTCCTTAATTTTAGGAGATCGTGACATGGATCCGTTCGGAGATATGGGGATATCGGTATGACATGAATAaaaaaaaaa        ]


>consensus_13438#3 GGAAGCGACGGCGCCGCCCGATATGGAGGCGGAGTCGGCGGCGGCGAGGCAGGCGAAGGA GTCGCTGGAGCTGGCGTTCCAGATGTCTCAGATCCTCGACACCGGCCTCGACCGCCACAC GCTGTCGCTGCTCATGGCGCTCTGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCT CGTCCGCGAGCTCTCCTCCGCGGCTCCTCCGACCACCGCCGCCGCCGCACCCAGCCCCGC GTCCAACGCCACCGCGGCGCCGTCCGCAAAAGCCGCGTCGCTTTTCCCCTCCGGTCTTCG CAAACCCTAGGGTTCGTGCCCCCTTCTCTCAGACGAGATCACACTATCACTTGATCCTAC ATTACGTTGTCTTAGAATGTAAACTAGCGGATCGTTCTGCTCTGTAGATTCGTTTTAGCC GCAACACCTTCCTGGCTTGTATCCTCAAGAGATTATGCACAATTTTTCTATCAGAACTCC TTAATTTTAGGAGATCGTGACATGGATCCGTTCAGAGATATGGGGATATCGGTATGACAT GAATATTTGATTGCGGAGACAC



consensusID : consensus_13438#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence
                              [CGTGCCGAACCCGGCCGAAGGCGATGACTGGACAGCTCAGGAGTTTAACAATAACATTATTAGAGCAAGGGAAGGCAAATGAACCTTGCTTCTGGGGACATTTTTGTTGGCCTTACTAACGGCATCAGTACAATGGGGGAACTATCATTCACACATAATTCCAGTTGGACATGCAGCCATGATAGTGCTATTCAGCAAAATATATGGATATATTGGCCCTCTTATTCTCAAACCATGCAGATATTGGGCAGTGGTATGTCAACAAAGATGTGGGAGGTCACAGTTGANCATTCAAAAACTTGTATTCTCACTGACAAGGTGCATTTGTACTATCCACACAGCCTAATCAAAACAGCTGTCGTGTTCAATGTTGTTGGAGAANTGAGAAGGCTAATATCTGANAANTTCGTTTGTGCTGATGATCTTATGGA]

[+] EMBL AA751956             [CGTGCCGAACCCGGCCGAAGGCGATGACTGGACAGCTCAGGAGTTTAACAATAACATTATTAGAGCAAGGGAAGGCAAATGAACCTTGCTTCTGGGGACATTTTTGTTGGCCTTACTAACGGCATCAGTACAATGGGGGAACTATCATTCACACATAATTCCAGTTGGACATGCAGCCATGATAGTGCTATTCAGCAAAATATATGGATATATTGGCCCTCTTATTCTCAAACCATGCAGATATTGGGCAGTGGTATGTCAACAAAGATGTGGGAGGTCACAGTTGANCATTCAAAAACTTGTATTCTCACTGACAAGGTGCATTTGTACTATCCACACAGCCTAATCAAAACAGCTGTCGTGTTCAATGTTGTTGGAGAANTGAGAAGGCTAATATCTGANAANTTCGTTTGTGCTGATGATCTTATGGA]


>consensus_13438#4 CGTGCCGAACCCGGCCGAAGGCGATGACTGGACAGCTCAGGAGTTTAACAATAACATTAT TAGAGCAAGGGAAGGCAAATGAACCTTGCTTCTGGGGACATTTTTGTTGGCCTTACTAAC GGCATCAGTACAATGGGGGAACTATCATTCACACATAATTCCAGTTGGACATGCAGCCAT GATAGTGCTATTCAGCAAAATATATGGATATATTGGCCCTCTTATTCTCAAACCATGCAG ATATTGGGCAGTGGTATGTCAACAAAGATGTGGGAGGTCACAGTTGANCATTCAAAAACT TGTATTCTCACTGACAAGGTGCATTTGTACTATCCACACAGCCTAATCAAAACAGCTGTC GTGTTCAATGTTGTTGGAGAANTGAGAAGGCTAATATCTGANAANTTCGTTTGTGCTGAT GATCTTATGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13438#2      ------------------------------------------------------------
consensus_13438#4      ------------------------------------------------------------
consensus_13438#0      AGAGCTACCCCCACCAACCGGAGTATCGGACTCCGGAAGCCGGAAGNGACGGCGCCGCCC 60
consensus_13438#1      ------------------------------------------------------------
consensus_13438#3      ------------------------------------------------------------
                                                                                   

consensus_13438#2      ------------------------------------------------------------
consensus_13438#4      ------------------------------------------------------------
consensus_13438#0      GATATGGAGGCGGAGTCGGCGGCGGCGAGGCAGGCGAAGGAGTCGCTGGAGCTGGCGTTC 120
consensus_13438#1      ------------------------------------------------------------
consensus_13438#3      ------------------------------------------------------------
                                                                                   

consensus_13438#2      ------------------------------------------------------------
consensus_13438#4      ------------------------------------------------------------
consensus_13438#0      CAGATGTCTCAGATCCTCGACACCGGCCTCGACCGCCACACGCTGTCGCTGCTCATGGCG 180
consensus_13438#1      ------------------------------------------------------------
consensus_13438#3      ------------------------------------------------------------
                                                                                   

consensus_13438#2      ------------------------------------------------------------
consensus_13438#4      ------------------------------------------------------------
consensus_13438#0      CTCTGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCCGCGAGCTCTCCTCC 240
consensus_13438#1      ------------------------------------------------------------
consensus_13438#3      ------------------------------------------------------------
                                                                                   

consensus_13438#2      ------------------------------------------------------------
consensus_13438#4      ------------------------------------------------------------
consensus_13438#0      GCGGCTCCTCCGACCACCGCCGCCGCCGCACCCAGCCCCGCGTCCAACGCCACCGCGGCG 300
consensus_13438#1      ------------------------------------------------------------
consensus_13438#3      ------------------------------------------------------------
                                                                                   

consensus_13438#2      ---------------------------------GAGCTTACCCACCAGGCGCTTTGCGGC 27
consensus_13438#4      ------------------------------------------------------------
consensus_13438#0      CCGTCCGCAAAAGCCGCGTCGCTTTTCCCCTCCGGTCTTCGCAAACCCTAGGGTCGGGGC 360
consensus_13438#1      -AGGTTGGCCGCGCCACCCTCAACTGCGACGGCAACCTTGTCTTCCTCCTCTACCGCGAA 59
consensus_13438#3      ------------------------------------------------------------
                                                                                   

consensus_13438#2      CAGCGACGACGAGGACGGAGGCGAGGCGCGC-GCCGCGGCCGGAGATGTCGCAGAAG--C 84
consensus_13438#4      ---------------------CGTGCCGAAC-CCGGCCGAAGGCGATGACTGGACAGCTC 38
consensus_13438#0      CAGCGAAGATGAGGGCGGAGGCGAGGTGCACAGCGGTGGCCGGAGATGTCGCAGAAG--C 418
consensus_13438#1      GGTCCAGGCCCACCACCCACCGGAGGCCGGAGGTGATCGATGGCGCCGCACGAGACGGAG 119
consensus_13438#3      --------------------------------GGAAGCGACGGCGCCGCCCGATATGGAG 28
                                                             *  ** *  *        *   

consensus_13438#2      GGCAGCCGGAGGAGAGCAGCGGCGGCGTCGGCGGAGG---CATGGGACCCCCCGTCCCGG 141
consensus_13438#4      AGGAGTTTAACAATAACATTATTAGAGCAAGGGAAGG---CAAATGAACCTTGCTTCTGG 95
consensus_13438#0      GGCAGCTGGAGGAGAGCAGCGGTAGCA-GAGCGGAGG---CATGGGGGCCCCTGGCCCAG 474
consensus_13438#1      ACGGGGACGGAGTCTGCGGCGGCAAGGCAGGCGAAGGAGTCGCTGGAGCTGGCGTTCCAG 179
consensus_13438#3      ------GCGGAGTCGGCGGCGGCGAGGCAGGCGAAGGAGTCGCTGGAGCTGGCGTTCCAG 82
                                       *             * * ***   *    *  *       *  *

consensus_13438#2      CCGAATCCGGGGCCGGGAGTTCCTCGCCGCCCCACCGCCGCGGGGAGCCCA--AGCGCCA 199
consensus_13438#4      GGACATTTTTGTT--GGCCTTACTAACGGCATCAGTACAATGGGGGAACTATCATTCACA 153
consensus_13438#0      CCAAATCTGGGGCTGGGAGCTCGTCGCCGCCCCACCGCTACGGGGAGCCCA--AGCATCA 532
consensus_13438#1      ATGTCCCAGATCCTGGACACCGGCCTCGACCGCCACACGCTCTCGCTGCTCATGGCGCTC 239
consensus_13438#3      ATGTCTCAGATCCTCGACACCGGCCTCGACCGCCACACGCTGTCGCTGCTCATGGCGCTC 142
                                      *          *  *  *    *      *   *           

consensus_13438#2      GAGGGTCCC--CGCCCTCCGCGAGGTGATCACGGAGGTGATGCGGAAGAGCAGCATCGAA 257
consensus_13438#4      CATAATTCC--AGTTGGACATGCAGCCATGATAGTGCT-ATTCAGCAAAATA-TATGGAT 209
consensus_13438#0      GATGGTCCC--TGCCCTCCGCGAGATGATCACGGAGGTGATGCAGAAAAGCAGCATTGAA 590
consensus_13438#1      TGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCC-GCGAGCTCTCCTCGGC 298
consensus_13438#3      TGCGACCGCGGCGCCAACCCCGAGGCCCTCGCCGCCCTCGTCC-GCGAGCTCTCCTCCGC 201
                               *   *     *  *      *    *   *  * * *          *    

consensus_13438#2      AAGTTGTTCACGG--------CTATCGAGCCCCTCATCCGAAGAGTGGTGAAAGAAGAAA 309
consensus_13438#4      ATATTGGCC-CTC--------TTATTCT-CAAACCATGCAGATATTGG-GCAGTGGTATG 258
consensus_13438#0      AAGTTGTTCATGG--------CTATTGAGCCCCTCATCCGAAGAATGGTGAAAGAAGAAA 642
consensus_13438#1      GGCTCCTCCGACC---------GCCGCAACTACTCCCGCGTCCACCGCCACCGCCGTGCC 349
consensus_13438#3      GGCTCCTCCGACCACCGCCGCCGCCGCACCCAGCCCCGCGTCCAACGCCACCGCGGCGCC 261
                          *    *                    *    *   *    *  *             

consensus_13438#2      TCGAGTCAGCGTTTGCAAATCATGCCACTATGATGGCAAGAACTGTCATGGATGTTGTTC 369
consensus_13438#4      TCAACAAAGATGTGGGAGGTCACAGTTGANCATT--CAAAAACTTGTATTCTCACTGACA 316
consensus_13438#0      TCGAGTCAGCGTTTGCAAATCATGCCATTATGATGGCAA--------------------- 681
consensus_13438#1      GTCAACAAAAGCCGCCTCGCTTTTCCCCTCCGGTCTTCGCCAACCCTAGGGTAGTGAAAA 409
consensus_13438#3      GTCCGCAAAAGCCGCGTCGCTTTTCCCCTCCGGTCTTCGCAAACCCTAGGGTT------- 314
                              *                         *                          

consensus_13438#2      CATCTTCATCGAAAAATTTCCAGCTACAGTTCATGACTAAGCTTTCACTTCCAATTTTCA 429
consensus_13438#4      AGGTGCATTTGTACTATCCACACAGCCTAATCAAAAC--AGCTGTCGTGTTCAATGTT-- 372
consensus_13438#0      ------------------------------------------------------------
consensus_13438#1      CCGGTGGAACCAATTTGCTTGATCGGTAGAGCAGACTCGAGATTTGATTGCTGGAAGAAA 469
consensus_13438#3      ----CGTGCCCCCTTCTCTCAGACG--AGATCACACT-ATCACTTGAT--CCTACATTAC 365
                                                                                   

consensus_13438#2      CTGGCTCCAAGAT-TGAAGGGGAGAGCTCCTTAAGTATAACTATTGCTCTAGTTGACACT 488
consensus_13438#4      ---GTTGGAGAAN-TGAGAAGGCTAATATCTGANAANT-----TCGTTTGTGCTGATGAT 423
consensus_13438#0      ---GCTCCAAGAT-TGAAGGAGAGAGCTCCTTAAGCATAACTATTGCTCTAGTTGACACT 737
consensus_13438#1      GGTATTGTCAAACTTAAGGAAGATGCTAAATCT-TGCTGTAGAATGCATTTC----TGAT 524
consensus_13438#3      GTTGTCTTAGAATGTAAACTAGCGGATCGTTCTGCTCTGTAGATTCGTTTTAGCCGCAAC 425
                                  *  * *    *        *      *                      

consensus_13438#2      GTTACCAGAGAAGTTGTAGCATCAGGCGATGAGTCCCTGATGAAAGTTGAAATAGTAGTT 548
consensus_13438#4      CTTATGGA---------------------------------------------------- 431
consensus_13438#0      GTTACCAGAGAAGTTGTAGCATCAGGCGATGAGTCCCTGATGAAAGTTGAAATAGTAGTT 797
consensus_13438#1      GCTGTGGTGG--CCTGTTTCCCCAAGGAAG---GTGTGGTTCATGGAACG---CTGCGTG 576
consensus_13438#3      ACCTTCCTGG--CTTGTATCCTCAAGAGATTATGCACAATTTTTCTATCAGAACTCCTTA 483
                                                                                   

consensus_13438#2      TTAGAGGGGGATTTTGAAGGTGGAGAAGGCGATGACTGGACAGCTCAAGAGTTNCACAAT 608
consensus_13438#4      ------------------------------------------------------------
consensus_13438#0      TTAGAGGGGGATTTTGAAGGTGGAGAAGGCGATGACTGGACAGCTCAGGAGTTTAACAAT 857
consensus_13438#1      ATTTGCTTGAGTTGTGGAAGATAAGAGTTTAGTAATCGTGGGAACGTTGCCTTTCCTATT 636
consensus_13438#3      ATTTTAGGAGATCGTGACATGGATCCGTTCAGAGAT-ATGGGGATATCGG----TATGAC 538
                                                                                   

consensus_13438#2      AACATTATTAGAGCAAGG-GAAGGTAAACGACCCTTGCTTTCTGGAGACATTTTTGTTGG 667
consensus_13438#4      ------------------------------------------------------------
consensus_13438#0      AACATTATTAGAGCAAGG-GAAGGCAAATGAACCTTGCTT-CTGGGGACATTTTTGTTGG 915
consensus_13438#1      TCCAATAGCCAATTTTGCCTATTATTAATTATCCTCTCTTGACCTAGAAGTCCTTTGCTT 696
consensus_13438#3      ATGAATATTTGATTGCGGAGACAC------------------------------------ 562
                                                                                   

consensus_13438#2      CCTTATTAAAGGCATTGGTGCAGTGGGGGAACTATCATTCACAGATAATTCCAGTTGGAC 727
consensus_13438#4      ------------------------------------------------------------
consensus_13438#0      CCTTACTAACGGCATCAGTACAATGGGGGAACTATCATTCACACATAATTCCAGTTGGAC 975
consensus_13438#1      TGTCATGTGCTTATCCAAGAAGGGATCTGTCATCGCCATTGGTCGAACTCTCATTTTCAG 756
consensus_13438#3      ------------------------------------------------------------
                                                                                   

consensus_13438#2      ACGCAGCCGTAAGTTCAGGCTAGGTGCAAAAACTGAGGATGGTTCT----------- 773
consensus_13438#4      ---------------------------------------------------------
consensus_13438#0      ATGCAGCCATGATAGTGCTATTCAGCAAAATATATGGATATATTGGCCCTCTTAATC 1032
consensus_13438#1      ATAATAATTGAAAGCAATGAGTGATATCTCTAAAAAACCTGGTTCAAAAAA------ 807
consensus_13438#3      ---------------------------------------------------------
                                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)