cluster # 13441

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Oryza sativa
cluster # 13441 cluster # 13441 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13441#0 length = 1833 sequences # 12

consensus_13441#1 length = 558 sequences # 1

consensusID : consensus_13441#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1833
fasta sequence

                              [CTCCCCACGCCCGAATCGACGAGGCACCGAAAAAAAGAAAAAAAAACACACAAAAAATAAAGAAGGGAGAACGAAGCCGACCACCCCCATCGGTTCCCCTTCCTCCTCGCAGATCTCCGACGCCGGCCGGCCACCGCCATGAACTCCTACTCCGGCGACCGCTCCTCCTCCTCCTCCTCCTCCCGCCCCACCACCACCTCCTTCGACTCCTACCAGTTCGACTTCGGCGTCAACTCGTCCCGCTCCTCTGCGTCCCGCCCCCTCAGACCGGGGCCCGGGGCCACCGCGGGGGGCGC-TGCCGCCGGCGGTGTAGGCGTCGGC-GGCAGCGCGTGGACGCACCAGCCGGCTAAGACGACGTCGTGGACCCACCAGCCGTCGCCCGCCTCCGCGGCGGCGGGGGCTGGATCCGGGCCCACGTCCATGGTCGGCGACATCTTCGGCCGGAGCTGGTCCTCCGCCGCGCCGTCCTCCGGCCTCGGCATCCCGCAGGCCAACAACCCCGGCCTCTTCAGCGACCTCCTCGGCTCCGCGCTCGGGTCGTCCTCCCGCGGCCAGCCCAACGCGCCGCTCAGATCTTCGGCGCCGCAGACCTACAAGCCGGCCAACGCCAACCCAAACCCTAGCGGCTCTCCGTTCTCGATGGGCGGCATGGCGAGCACGCTCCCGAAGACGACCACCGGGTCGCCGATGTCCTCCGGTGGTGGCGGGTATGGTGTTGGTGGCCGTCCGATGAAGCCGGCGGGCATGGCGTCGGCGGCCGCGGCACAGCCGATGATGGGGCAGAAGAAGGATCCGTTCGGTTCAATAGACCCCTTCGCTGCGAAGCCCGGTTCTATGAATGCTGCAAAGAAGGCTAATCCCGTCAAGCCGGATCAAGGTTTTGGGGCGTTCCAAGGCGTGAATTCAGGTGGCATTGCAGGATTATCGGGCTTCCAGACCGCTGACAGTGGATTTGGTAGCTTCCAGAGTTCCGGTGCTGTGAAACCTTCCAGCTTTACTCCACTGGCACCAGCTCCAGCGCCTGCTCCTGCGGCTGCTGCAGCGAACTCCGGTGTAGATCACTTGGACTCGCTGTTTGCTTCGACAACAGCTGCTCCGACTGCGGTGAGTAATGGTGGTGGGGGGGGTGACATGTTTGGTGAGATGGATGGCTGGGTGGATGTGGAGGCAGATTTTGGTAGTGGTGACAGCGGTGGCGCAACCACAGAGTTGGAGGGACTCCCACCGCCACCGTCTGGGTTGACAGCATCTGCTGCTAAGTCCAAAGGGATGGATAATTACAAGGGTGGGCAGTATGCTGATGCGATCAAGTGGCTGTCATGGGCCGTTGTACTCATTGAGAAGTCTGGGAAGTATGCTGACATTGTAGAGGTGCTGTCATCAAGGGCTTCATCTTACAAGGAGGTTGGGGAGTACAAGAAGGCAATTGCCGACTGTTCGAAGGTACTAGAGAAAGATAAGGATAATGTTTCGGTGCTTGTCCAACGTGCCCTTCTATATGAGAGCTCTGAGAAATACAGGCTTGGTGCAGAGGACCTCCGTTTGGTTCTGAAAATTGACCCAGGGAATAGGCTTGCGAGGAGTATGATCCATCGCCTGAACAAGATGGCTGACTAGAGGTGTTTTGCTAGTGCATTGTGTACAACCACTGTAATCCACCTTGACACGAGAACTGTGAGTTATTTTGAATTGATTTACTATACTTGTGCCTTTGGGGGAATAATTTGCCGATGTGTTGTTATAAA-CCGTGGGATTACATCTTTACCTACAGTATATTCTTTTATTTGTATAATCATATAATGTATCAAGCTTGCTTTAAGAATTAAGTACTTT]

[+] EMBL AK100470             [CTCCCCACGCCCGAATCGACGAGGCACCGAAAAAAAGAAAAAAAAACACACAAAAAATAAAGAAGGGAGAACGAAGCCGACCACCCCCATCGGTTCCCCTTCCTCCTCGCAGATCTCCGACGCCGGCCGGCCACCGCCATGAACTCCTACTCCGGCGACCGCTCCTCCTCCTCCTCCTCCTCCCGCCCCACCACCACCTCCTTCGACTCCTACCAGTTCGACTTCGGCGTCAACTCGTCCCGCTCCTCTGCGTCCCGCCCCCTCAGACCGGGGCCCGGGGCCACCGCGGGGGGCGC TGCCGCCGGCGGTGTAGGCGTCGGC GGCAGCGCGTGGACGCACCAGCCGGCTAAGACGACGTCGTGGACCCACCAGCCGTCGCCCGCCTCCGCGGCGGCGGGGGCTGGATCCGGGCCCACGTCCATGGTCGGCGACATCTTCGGCCGGAGCTGGTCCTCCGCCGCGCCGTCCTCCGGCCTCGGCATCCCGCAGGCCAACAACCCCGGCCTCTTCAGCGACCTCCTCGGCTCCGCGCTCGGGTCGTCCTCCCGCGGCCAGCCCAACGCGCCGCTCAGATCTTCGGCGCCGCAGACCTACAAGCCGGCCAACGCCAACCCAAACCCTAGCGGCTCTCCGTTCTCGATGGGCGGCATGGCGAGCACGCTCCCGAAGACGACCACCGGGTCGCCGATGTCCTCCGGTGGTGGCGGGTATGGTGTTGGTGGCCGTCCGATGAAGCCGGCGGGCATGGCGTCGGCGGCCGCGGCACAGCCGATGATGGGGCAGAAGAAGGATCCGTTCGGTTCAATAGACCCCTTCGCTGCGAAGCCCGGTTCTATGAATGCTGCAAAGAAGGCTAATCCCGTCAAGCCGGATCAAGGTTTTGGGGCGTTCCAAGGCGTGAATTCAGGTGGCATTGCAGGATTATCGGGCTTCCAGACCGCTGACAGTGGATTTGGTAGCTTCCAGAGTTCCGGTGCTGTGAAACCTTCCAGCTTTACTCCACTGGCACCAGCTCCAGCGCCTGCTCCTGCGGCTGCTGCAGCGAACTCCGGTGTAGATCACTTGGACTCGCTGTTTGCTTCGACAACAGCTGCTCCGACTGCGGTGAGTAATGGTGGTGGGGGGGGTGACATGTTTGGTGAGATGGATGGCTGGGTGGATGTGGAGGCAGATTTTGGTAGTGGTGACAGCGGTGGCGCAACCACAGAGTTGGAGGGACTCCCACCGCCACCGTCTGGGTTGACAGCATCTGCTGCTAAGTCCAAAGGGATGGATAATTACAAGGGTGGGCAGTATGCTGATGCGATCAAGTGGCTGTCATGGGCCGTTGTACTCATTGAGAAGTCTGGGAAGTATGCTGACATTGTAGAGGTGCTGTCATCAAGGGCTTCATCTTACAAGGAGGTTGGGGAGTACAAGAAGGCAATTGCCGACTGTTCGAAGGTACTAGAGAAAGATAAGGATAATGTTTCGGTGCTTGTCCAACGTGCCCTTCTATATGAGAGCTCTGAGAAATACAGGCTTGGTGCAGAGGACCTCCGTTTGGTTCTGAAAATTGACCCAGGGAATAGGCTTGCGAGGAGTATGATCCATCGCCTGAACAAGATGGCTGACTAGAGGTGTTTTGCTAGTGCATTGTGTACAACCACTGTAATCCACCTTGACACGAGAACTGTGAGTTATTTTGAATTGATTTACTATACTTGTGCCTTTGGGGGAATAATTTGCCGATGTGTTGTTATAAA CCGTGGGATTACATCTTTACCTACAGTATATTCTTTTATTTGTATAATCATATAATGTATCAAGCTTGC                   ]
[+] EMBL AU101033             [                                     AAAAAAAAACACACAAAAAATAAAGAAGGGAGAACGAAGCCGACCACCCCCATCGGTTCCCCTTCCTCCTCGCAGATCTCCGACGCCGGCCGGCCACCGCCATGAACTCCTACTCCGGCGACCGCTCCTCCTCCTCCTCCTCCTCCCGCCCCACCACCACCTCCTTCGACTCCTACCAGTTCGACTTCGGCGTCAACTCGTCCCGCTCCTCTGCGTCCCGCCCCCTCAGACCGGGGCCCGGGGCCACCGCGGGGGGCGC TGNCG CGGCGGTGTAGGCGTCGGC GGCAGCGCGTGGACGCACCAGCCGGCTAAGACGACGTCGTGGACCCACCAGCCGTCGCCCG CTCCGCGGCGGCGGGGGCTGGATCCGGGCCCACGT CATGGTCGGCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL D43138               [                                                     AAAATAAAGAAGGGAGAACGAAGCCGACCACCCCCATCGGTTCCCCTTCCTCCTCGCAGATCTCCGACGCCGGCCGGCCACCGCCATGAACTCCTACTCCGGCGACCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSC4971              [                                                     AAAATAAAGAAGGGAGAACGAAGCCGACCACCCCCATCGGTTCCCCTTCCTCCTCGCAGATCTCCGACGCCGGCCGGCCACCGCCATGAACTCCTACTCCGGCGACCGCTCCTCCTCCTCCTCCTCCTCCCGCCCCACCACCACCTCCTTCGACTCCTACCAGTTCGACTTCGGCGTCAACTCGTCCCGCTCCTCTGCGTCCCGNCCCCTCAGACCGGGGCCCGGGGCCACCGCGGGGGGNGCTTGCCGCCGGGGGTGTAGGCGTCGGCGGGCAG NCGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU101034             [                                                                                                                                                                                            CACCACCACCTCCTTCGACTCCTACCAGTTCGACTTCGGCGTCAACTCGTCCCGCTCCTCTGCGTCCCGCCCCCTCAGACCGGGGCCCGGGGCCACCGCGGGGGGCGC TGCCGCCGGCGGTGTAGGCGTCGGC GGCAGCGCGTGGACGCACCAGCCGGCTAAGACGACGTCGTGGACCCACCAGCCGTCGCCCGCCTCCGCGGCGGCGGGGGCTGGATCCGGGCCCACGTCCATGGTCGGCGACATCTTCGGCCGGAGCTGGTCCTCCGCCGCGCCGTCCTCCGGCCTCGGCATCCCGCAGGCCAACAACCCCGGCCTCTTCAGCGACCTCCTCGGCTCCGCGCTCGGGTCGTCCTCCCGCGGCCAGCCCAACGCGCCGCTCAGATCTTCGGCGCCGCAGACCTACAAGCCGGCCAACGCCAACCCAAACCCTAGCGGCTCTCCGTTCTCGATGGGCGGCATGGCGAGCACGCTCCCGAAGACGACCACCGGGTCGCCGATGTCCTCCGGTGGTGGCGGGTATGGTGTTGGTGGCCGTCCGATGAAGCCGGCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU093484             [                                                                                                                                                                                                                                                                                                                                                                                  CCAGCCGTCGCCCGCCTCCGCGGCGGCGGGGGCTGGATCCGGGCCCACGTCCATGGTCGGCGACATCTTCGGCCGGAGCTGGTCCTCCGCCGCGCCGTCCTCCGGCCTCGGCATCCCGCAGGCCAACAACCCCGGCCTCTTCAGCGACCTCCTCGGCTCCGCGCTCGGGTCGTCCTCCCGCGGNCANCCCAANGCGCCGCTCAGATCTTCGGCGCCGCAGACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AU108766             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATGATGGGGCAGAAGAAGGATCCGTTCGGTTCAATAGACCCCTTCGCTGCGAA CCCGGTTCTATGAATGCTGCAAAGAAGGCTAATCCCGTCAAGCCGGATCAAGGTTTTGGGGCGTTCCAAGGCGTGAATTCAGGTGGCATTGCAGGATTATCGGGCTTCCAGACCGCTGACAGTGGATTTGATAGCTTCCAGAGTTCCGGTGCTGTGAAACCTTCCAGCTTTACTCCACTGGCACCAGCTCCAGCGCCTGCTCCTGCGGCTGCTGCAGCGAACTCCGGTGTAGATCACTTGGACTCGCTGTTTGCTTCGACAACAGCTGCTCCGACTGCGGTGAGTAATGGTGGTGGGGGGGGTGACATGTTTGGTGAGATGGATGGCTGGGTGGATGTGGAGGCAGATTTTGGTAGTGGTGACAGCGGTGGCGCAACCACAGAGTTGGAGGGACTCCCACCGCCACCGTCTGGGTTGACAGCATCTGCTGCTAAGTCCAAAGGGATGGATAATTACAAGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL D43419               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGCCGGATCAAGGTTTTGGGGCGTTCCAAGGCGTGATTTCAGGTGGCATTGCAGGATTATCGGGCTTCCAGACCGCTGACAGTGGATTTGGTAGCTTCCAGAGTTCCGGTGCTGTGAAACCTTCCAGCTTTACTCCACTGGCACCAGCTCCAGCGCCTGCTCCTGCGGCTGCTGCAGCGAACTCCGGTGTAGATCACTTGGACTCGCTGTTTGCTTCGACAACAGCTGCTCCGACTGCGGTGAGTAATGGTGGTGGGGGGGGTGACATGTTTGGTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB685569             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ACTTGGACTCGCTGTTTGCTTCGACAACAGCTGCTCCGACTGCGGTGAGTAATGGTGGTGGGGGGGGTGACATGTTTGGTGAGATGGATGGCTGGGTGGATGTGGAGGCAGATTTTGGTAGTGGTGACAGCGGTGGCGCAACCACAGAGTTGGAGGGACTCCCACCGCCACCGTCTGGGTTGACAGCATCTGCTGCTAAGTCCAAAGGGATGGATAATTACAAGGGTGGGCAGTATGCTGATGCGATCAAGTGGCTGTCATGGGCCGTTGTACTCATTGAGAAGTCTGGGAAGTATGCTGACATTGTAGAGGTGCTGTCATCAAGGGCTTCATCTTACAAGGAGGTTGGGGAGTACAAGAAGGCAATTGCCGACTGTTCGAAGGTACTAGAGAAAGATAAGGATAATGTTTCGGTGCTTGTCCAACGTGCCCTTCTATATGAGAGCTCTGAGAAATACAGGCTTGGTGCAGAGGACCTCCGTTTGGTTCTGAAAATTGACCCAGGGAATAGGCTTGCGAGGAGTATGATCCATCGCCTGAACAAGATGGCTGACTAGAGGTGTTTTGCTAGTGCATTGTGTACAACCACTGTAATCCACCTTGACACGAGAACTGTGAGTTATTTTGAATTGATTTACTATACTTGTGCCTTTGGGGGAATAATTTGCCGATGTGTTGTTATAAACCCGTGGGATTACATCTTTACCTACAGTATATTCTTTTATTTGTATAATCATATAAAGGATCAAGCTTGCTTTAAGAATTA        ]
[+] EMBL CA766357             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CACCGCCACCGTCTGGGTTGACAGCATCTGCTGCTAAGTCCAAAGGGATGGATAATTACAAGGGTGGGCAGTATGCTGATGCGATCAAGTGGCTGTCATGGGCCGTTGTACTCATTGAGAAGTCTGGGAAGGATGCCGACATTGTAGAGGTGCTGTCATCAAGGGCTTCATCTTACAAGGAGGTTGGGGAGTACAAGAAGGCAATTGCTGACTGTTCGAAGGTACTAGAGAAAGATAAGGATAATGTTTCGGTGCTTGTCCAACGTGCCCTTCTATATGAGAGCTCTGAGAAATACAGGCTTGGTGCAGAGGACCTCCGTTTGGTTCCGAAAATTGACCCAGGGAATAGGCTTGCGAGGAGTATGATCCATCGCCTGAACAAGATGGCTGACTAGAGGTGTTTTGCTAGTGCATTGTGTACAACCACTGTAATCCACCTTGACACGAGAACTGTGAGTTATTTTGAATTGATTTACTATACTTGTGCCTTTGGGGGAATAATTTGCCGATGTGTTGTTATAAA CCGTGGGATTACATCTTTACCTACAGTATATTCTTTTATTTGTATAATCATATAATGTATCAAGCTTGCTTTAAGAATTAAGTACTTT]
[+] EMBL AU093483             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGGTGCTGTCATCAAGGGCTTCATCTTACAAGGAGGTTGGGGAGTACAAGAAGGCAATTGCCGACTGTTCGAAGGTACTAGAGAAAGATAAGGATAATGTTTCGGTGCTTGTCCAACGTGCCCTTCTATATGAGAGCTCTGAGAAATACAGGCTTGGTGCAGAGGACCTCCGTTTGGTTCTGAAAATTGACCCAGGGAATAGGCTTGCGAGGAGTATGATCCATCGCCTGAACAAGATGGCTGACTAGAGGTGTTTTGCTAGTGCATTGTGTACAACCACTGTAATCCACCTTGACACGAGAACTGTGAGTTATTTTGAATTGATTTACTATACTTGTGCCTTTGGGGGAATAATTTGCCGATGTGTTGTTATAAA CCGTGGGATTACATCTTTACCTACAGTATATTCTTTTATTTGTATAATCATATAATGTATCAAGCTTGCTTTAAAAAaaaaaaa    ]
[-] EMBL C27097               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCCTCATCTTA AAGGAGGTTGGGAAGTACAAG AGGCAATTGCCGACTG TCGAAGGTACNAGAGAAAGATAAGGATAATGTTTCGGTGCTTGTCCAACGTGCCCTTCTATATGAGAGCTCTGAGAAATACAGGCTTGGTGCAGAGGACCTCCGTTTGGTTCTGAAAATTGACCCAGGGAATAGGCTTGCGAGGAGTATGATCCATCGCCTGAACAAGATGGCTGACTAGAGGTGTTTTGCTAGTGCATTGTGTACAACCACTGTAATCCACCTTGACACGAGAACTGTGAGTTATTTTGAATTGATTTACTATACTTGTGCCTTTGGGGGAATAATTTGCCGATGTGTTGTTATAAA CCGTGGGATTACATCTTTACCTACAGTATATTCTTTTATTTGTATAATCATATAATGTATCAAGCTTGCTTTAAGAA           ]




>consensus_13441#0
CTCCCCACGCCCGAATCGACGAGGCACCGAAAAAAAGAAAAAAAAACACACAAAAAATAA
AGAAGGGAGAACGAAGCCGACCACCCCCATCGGTTCCCCTTCCTCCTCGCAGATCTCCGA
CGCCGGCCGGCCACCGCCATGAACTCCTACTCCGGCGACCGCTCCTCCTCCTCCTCCTCC
TCCCGCCCCACCACCACCTCCTTCGACTCCTACCAGTTCGACTTCGGCGTCAACTCGTCC
CGCTCCTCTGCGTCCCGCCCCCTCAGACCGGGGCCCGGGGCCACCGCGGGGGGCGCTGCC
GCCGGCGGTGTAGGCGTCGGCGGCAGCGCGTGGACGCACCAGCCGGCTAAGACGACGTCG
TGGACCCACCAGCCGTCGCCCGCCTCCGCGGCGGCGGGGGCTGGATCCGGGCCCACGTCC
ATGGTCGGCGACATCTTCGGCCGGAGCTGGTCCTCCGCCGCGCCGTCCTCCGGCCTCGGC
ATCCCGCAGGCCAACAACCCCGGCCTCTTCAGCGACCTCCTCGGCTCCGCGCTCGGGTCG
TCCTCCCGCGGCCAGCCCAACGCGCCGCTCAGATCTTCGGCGCCGCAGACCTACAAGCCG
GCCAACGCCAACCCAAACCCTAGCGGCTCTCCGTTCTCGATGGGCGGCATGGCGAGCACG
CTCCCGAAGACGACCACCGGGTCGCCGATGTCCTCCGGTGGTGGCGGGTATGGTGTTGGT
GGCCGTCCGATGAAGCCGGCGGGCATGGCGTCGGCGGCCGCGGCACAGCCGATGATGGGG
CAGAAGAAGGATCCGTTCGGTTCAATAGACCCCTTCGCTGCGAAGCCCGGTTCTATGAAT
GCTGCAAAGAAGGCTAATCCCGTCAAGCCGGATCAAGGTTTTGGGGCGTTCCAAGGCGTG
AATTCAGGTGGCATTGCAGGATTATCGGGCTTCCAGACCGCTGACAGTGGATTTGGTAGC
TTCCAGAGTTCCGGTGCTGTGAAACCTTCCAGCTTTACTCCACTGGCACCAGCTCCAGCG
CCTGCTCCTGCGGCTGCTGCAGCGAACTCCGGTGTAGATCACTTGGACTCGCTGTTTGCT
TCGACAACAGCTGCTCCGACTGCGGTGAGTAATGGTGGTGGGGGGGGTGACATGTTTGGT
GAGATGGATGGCTGGGTGGATGTGGAGGCAGATTTTGGTAGTGGTGACAGCGGTGGCGCA
ACCACAGAGTTGGAGGGACTCCCACCGCCACCGTCTGGGTTGACAGCATCTGCTGCTAAG
TCCAAAGGGATGGATAATTACAAGGGTGGGCAGTATGCTGATGCGATCAAGTGGCTGTCA
TGGGCCGTTGTACTCATTGAGAAGTCTGGGAAGTATGCTGACATTGTAGAGGTGCTGTCA
TCAAGGGCTTCATCTTACAAGGAGGTTGGGGAGTACAAGAAGGCAATTGCCGACTGTTCG
AAGGTACTAGAGAAAGATAAGGATAATGTTTCGGTGCTTGTCCAACGTGCCCTTCTATAT
GAGAGCTCTGAGAAATACAGGCTTGGTGCAGAGGACCTCCGTTTGGTTCTGAAAATTGAC
CCAGGGAATAGGCTTGCGAGGAGTATGATCCATCGCCTGAACAAGATGGCTGACTAGAGG
TGTTTTGCTAGTGCATTGTGTACAACCACTGTAATCCACCTTGACACGAGAACTGTGAGT
TATTTTGAATTGATTTACTATACTTGTGCCTTTGGGGGAATAATTTGCCGATGTGTTGTT
ATAAACCGTGGGATTACATCTTTACCTACAGTATATTCTTTTATTTGTATAATCATATAA
TGTATCAAGCTTGCTTTAAGAATTAAGTACTTT

consensusID : consensus_13441#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [GGTGGTGGGGGGGGTGACATGTTTGGTGAGATGGATGGCTGGGTGGATGTGGAGGCAGATTTTGGTAGTGGTGACAGCGGTGGCGCAACCACAGAGTTGGAGGGACTCCCACCGCCACCGTCTGGGTTGACAGCATCTGCTGCTAAGTCCAAAGGGATGGATAATTACAAGGGTGGGCAGTATGCTGATGCGATCAAGTGGCTGTCATGGGCCGTTGTACTCATTGAGAAGTCTGGGAAGTATGCTGACATTGTAGAGGTGCTGTCATCAAGGGCTTCATCTTACAAGGAGGTTGGGGAGTACAAGAAGGCAATTGCCGACTGTTCGAAGGTACTAGAGAAAGATAAGGATAATGTTTCGGTGCTTGTCCAACGTGCCCTTCTATATGAGAGCTCTGAGAAATACAGGCTTGGTGCAGAGGACCTCCGTTTGGTTCTGAAAATTGACCCAGGGAATAGGCTTGCGAGGAGTATGATCCACCCCCCGCGCAGGACGCGGGCCCCGATGTGAGGGGGTAGGGCACAGAGGACCGCCACGATAATCCGCCGGACTCGGAGA]

[-] EMBL CB685568             [GGTGGTGGGGGGGGTGACATGTTTGGTGAGATGGATGGCTGGGTGGATGTGGAGGCAGATTTTGGTAGTGGTGACAGCGGTGGCGCAACCACAGAGTTGGAGGGACTCCCACCGCCACCGTCTGGGTTGACAGCATCTGCTGCTAAGTCCAAAGGGATGGATAATTACAAGGGTGGGCAGTATGCTGATGCGATCAAGTGGCTGTCATGGGCCGTTGTACTCATTGAGAAGTCTGGGAAGTATGCTGACATTGTAGAGGTGCTGTCATCAAGGGCTTCATCTTACAAGGAGGTTGGGGAGTACAAGAAGGCAATTGCCGACTGTTCGAAGGTACTAGAGAAAGATAAGGATAATGTTTCGGTGCTTGTCCAACGTGCCCTTCTATATGAGAGCTCTGAGAAATACAGGCTTGGTGCAGAGGACCTCCGTTTGGTTCTGAAAATTGACCCAGGGAATAGGCTTGCGAGGAGTATGATCCACCCCCCGCGCAGGACGCGGGCCCCGATGTGAGGGGGTAGGGCACAGAGGACCGCCACGATAATCCGCCGGACTCGGAGA]




>consensus_13441#1
GGTGGTGGGGGGGGTGACATGTTTGGTGAGATGGATGGCTGGGTGGATGTGGAGGCAGAT
TTTGGTAGTGGTGACAGCGGTGGCGCAACCACAGAGTTGGAGGGACTCCCACCGCCACCG
TCTGGGTTGACAGCATCTGCTGCTAAGTCCAAAGGGATGGATAATTACAAGGGTGGGCAG
TATGCTGATGCGATCAAGTGGCTGTCATGGGCCGTTGTACTCATTGAGAAGTCTGGGAAG
TATGCTGACATTGTAGAGGTGCTGTCATCAAGGGCTTCATCTTACAAGGAGGTTGGGGAG
TACAAGAAGGCAATTGCCGACTGTTCGAAGGTACTAGAGAAAGATAAGGATAATGTTTCG
GTGCTTGTCCAACGTGCCCTTCTATATGAGAGCTCTGAGAAATACAGGCTTGGTGCAGAG
GACCTCCGTTTGGTTCTGAAAATTGACCCAGGGAATAGGCTTGCGAGGAGTATGATCCAC
CCCCCGCGCAGGACGCGGGCCCCGATGTGAGGGGGTAGGGCACAGAGGACCGCCACGATA
ATCCGCCGGACTCGGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13441#0      CTCCCCACGCCCGAATCGACGAGGCACCGAAAAAAAGAAAAAAAAACACACAAAAAATAA 60
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      AGAAGGGAGAACGAAGCCGACCACCCCCATCGGTTCCCCTTCCTCCTCGCAGATCTCCGA 120
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      CGCCGGCCGGCCACCGCCATGAACTCCTACTCCGGCGACCGCTCCTCCTCCTCCTCCTCC 180
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      TCCCGCCCCACCACCACCTCCTTCGACTCCTACCAGTTCGACTTCGGCGTCAACTCGTCC 240
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      CGCTCCTCTGCGTCCCGCCCCCTCAGACCGGGGCCCGGGGCCACCGCGGGGGGCGCTGCC 300
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      GCCGGCGGTGTAGGCGTCGGCGGCAGCGCGTGGACGCACCAGCCGGCTAAGACGACGTCG 360
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      TGGACCCACCAGCCGTCGCCCGCCTCCGCGGCGGCGGGGGCTGGATCCGGGCCCACGTCC 420
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      ATGGTCGGCGACATCTTCGGCCGGAGCTGGTCCTCCGCCGCGCCGTCCTCCGGCCTCGGC 480
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      ATCCCGCAGGCCAACAACCCCGGCCTCTTCAGCGACCTCCTCGGCTCCGCGCTCGGGTCG 540
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      TCCTCCCGCGGCCAGCCCAACGCGCCGCTCAGATCTTCGGCGCCGCAGACCTACAAGCCG 600
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      GCCAACGCCAACCCAAACCCTAGCGGCTCTCCGTTCTCGATGGGCGGCATGGCGAGCACG 660
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      CTCCCGAAGACGACCACCGGGTCGCCGATGTCCTCCGGTGGTGGCGGGTATGGTGTTGGT 720
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      GGCCGTCCGATGAAGCCGGCGGGCATGGCGTCGGCGGCCGCGGCACAGCCGATGATGGGG 780
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      CAGAAGAAGGATCCGTTCGGTTCAATAGACCCCTTCGCTGCGAAGCCCGGTTCTATGAAT 840
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      GCTGCAAAGAAGGCTAATCCCGTCAAGCCGGATCAAGGTTTTGGGGCGTTCCAAGGCGTG 900
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      AATTCAGGTGGCATTGCAGGATTATCGGGCTTCCAGACCGCTGACAGTGGATTTGGTAGC 960
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      TTCCAGAGTTCCGGTGCTGTGAAACCTTCCAGCTTTACTCCACTGGCACCAGCTCCAGCG 1020
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      CCTGCTCCTGCGGCTGCTGCAGCGAACTCCGGTGTAGATCACTTGGACTCGCTGTTTGCT 1080
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      TCGACAACAGCTGCTCCGACTGCGGTGAGTAATGGTGGTGGGGGGGGTGACATGTTTGGT 1140
consensus_13441#1      ---------------------------------GGTGGTGGGGGGGGTGACATGTTTGGT 27
                                                        ***************************

consensus_13441#0      GAGATGGATGGCTGGGTGGATGTGGAGGCAGATTTTGGTAGTGGTGACAGCGGTGGCGCA 1200
consensus_13441#1      GAGATGGATGGCTGGGTGGATGTGGAGGCAGATTTTGGTAGTGGTGACAGCGGTGGCGCA 87
                       ************************************************************

consensus_13441#0      ACCACAGAGTTGGAGGGACTCCCACCGCCACCGTCTGGGTTGACAGCATCTGCTGCTAAG 1260
consensus_13441#1      ACCACAGAGTTGGAGGGACTCCCACCGCCACCGTCTGGGTTGACAGCATCTGCTGCTAAG 147
                       ************************************************************

consensus_13441#0      TCCAAAGGGATGGATAATTACAAGGGTGGGCAGTATGCTGATGCGATCAAGTGGCTGTCA 1320
consensus_13441#1      TCCAAAGGGATGGATAATTACAAGGGTGGGCAGTATGCTGATGCGATCAAGTGGCTGTCA 207
                       ************************************************************

consensus_13441#0      TGGGCCGTTGTACTCATTGAGAAGTCTGGGAAGTATGCTGACATTGTAGAGGTGCTGTCA 1380
consensus_13441#1      TGGGCCGTTGTACTCATTGAGAAGTCTGGGAAGTATGCTGACATTGTAGAGGTGCTGTCA 267
                       ************************************************************

consensus_13441#0      TCAAGGGCTTCATCTTACAAGGAGGTTGGGGAGTACAAGAAGGCAATTGCCGACTGTTCG 1440
consensus_13441#1      TCAAGGGCTTCATCTTACAAGGAGGTTGGGGAGTACAAGAAGGCAATTGCCGACTGTTCG 327
                       ************************************************************

consensus_13441#0      AAGGTACTAGAGAAAGATAAGGATAATGTTTCGGTGCTTGTCCAACGTGCCCTTCTATAT 1500
consensus_13441#1      AAGGTACTAGAGAAAGATAAGGATAATGTTTCGGTGCTTGTCCAACGTGCCCTTCTATAT 387
                       ************************************************************

consensus_13441#0      GAGAGCTCTGAGAAATACAGGCTTGGTGCAGAGGACCTCCGTTTGGTTCTGAAAATTGAC 1560
consensus_13441#1      GAGAGCTCTGAGAAATACAGGCTTGGTGCAGAGGACCTCCGTTTGGTTCTGAAAATTGAC 447
                       ************************************************************

consensus_13441#0      CCAGGGAATAGGCTTGCGAGGAGTATGATCCATCGCCTGAACAAGATGGCTGACTAGAGG 1620
consensus_13441#1      CCAGGGAATAGGCTTGCGAGGAGTATGATCCACCCCCCGCGCAGGACGCGGGCCCCGATG 507
                       ******************************** * ** *  ** ** *   * *  ** *

consensus_13441#0      TGTTTTGCTAGTGCATTGTGTACAACCACTGTAATCCACCTTGACACGAGAACTGTGAGT 1680
consensus_13441#1      TGAGGGGGTAGGGCACAGAGGACCGCCACGATAATCCGCCG-GACTCGGAGA-------- 558
                       **    * *** ***  * * **  ****  ****** **  *** **   *        

consensus_13441#0      TATTTTGAATTGATTTACTATACTTGTGCCTTTGGGGGAATAATTTGCCGATGTGTTGTT 1740
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      ATAAACCGTGGGATTACATCTTTACCTACAGTATATTCTTTTATTTGTATAATCATATAA 1800
consensus_13441#1      ------------------------------------------------------------
                                                                                   

consensus_13441#0      TGTATCAAGCTTGCTTTAAGAATTAAGTACTTT 1833
consensus_13441#1      ---------------------------------