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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1789 fasta sequence
[TCTCTCTCTCTCCAAAATTCCAAGGCGCTGCAGCAGCAGACAGAGGTTTGAGAGAGAGAGAAGAAAAAAAAAACGGACACCGAAACTGTCCGAGACGCGACACCAACCGGCTTTTCTCTCTCCCCTTCCACCGCCACCGCCAACCCCTTCTAGAATCTTCTGGAATCCAGTCGGTGGCGGAGGGCGGAGGCTTCTGGAAGGCAGCGCGGGGATCTCGGCGGCGCCGGAGGCGTCCATGGCGAGGCCGTGAAGCCCTCGCTCGCCCGGAGGCCACGCGACGCGCGGGTTAGGAGGAGGAGGAGGGATCCGGGTGGGTGGGGTGGGGGGGACGAGATCCCGCGAGATGCAGATCCGAGAGGGGGGCCCGCGGCGCGGGGCGGCGTCGGCGGCGAGGTCGCCGA-TGTCCGCCATGATGCTCGCCATGTTCGCCACCATGGCCTCCTTCTACGTCGCCGGCCGTCTGTGGCAGGATGCGCAGAGTAGGGTTTACCTGATTAAAGAGCTCGACAGGCGAACCGGCCAGGGCCATTCGACGATATCGGTGGATGATACCTTGAAGGTTGTCGCATGCAGGCAGCAAGGAAAGAGGCTGGCCTCACTTGAGATGGAGCTGGCTGCAGCAAAGCATGAAGGTTTCGTGGGGAAATATACCTATGAGACAAATGGAACTAACTCTAGAAAGAGGCCACTGATTGTTATTGGAATAATGACAAGCTTTGGGAGGAAAAACTACCGTGATGCTGTCAGGAAGTCATGGCTTCCGACAGGTTCAATGCTGAAGAAACTAGAAGAAGAAAAAGGCATTGTAGTGCGCTTCATAGTTGGAAGAAGTGT-GAACCGAGGAGATGCTTCAGACAGGGAGATTGATGAAGAAAATAGAAGTACAAAAGATTTCATGATCTTGGATGATCATACAGAGTCTGAAGAGGAGAGTCCTAAAAAGACAAAAAGTTTCTTTGCTAATGCTGCAGAGTCATTTGATGCTGAATTCTATGCTAAGGTCAATGATGATATATACATAAATGTTGACACTTTGAGTGCAATGCTCAAAGAACACTGGGACAAGCCTCGTGTCTACATTGGCTGTATGAAATCCGGCGAGGTCTTCTCTGAATCAACTCAT-AAGT-GGTATGAACCAGAATGGTGGAAATTT-GGTGATGGGAAAACGTACTTCCGCCATGCTTCTGGTGAAATGTTTGTCATCTCAAAGGCTGTAGCTCAATTCATCTCTATAAACAGGTCT-GTTC-TCCGGACATATGCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAAGCATGTAAA-TGAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTCAGCTCTGTGACAAGCAACACTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGAGATTATACGGAATGAAGCATACCATCTGCAGACAATGAGATCAAAACTGGCGTTTTGAAGATTTTGTTTTCTTCTGCCGTTTTCTGTGGCTCCCGTTGATCAAGCAGCACTAGTTCAAACTGAGCCATATATATCTTCTTTTTGCGAAGGAAAATCTTGTACTTTTTTTCCTGCAAGACCACACTGCTAAAATCAGGGATCCTAACTAAATTCCATCTGCAGATTGTATCTTGATTTTGCCTGTCGCTTGTAGATGTCCACCCTTACCATTCTTTTACTGATAGACACCA-TTGTTGGAGTGACAAAA---T-CT-AAT-AGCAAA-TCAGGAAATTATTTTACTCCATCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK069501 [TCTCTCTCTCTCCAAAATTCCAAGGCGCTGCAGCAGCAGACAGAGGTTTGAGAGAGAGAGAAGAAAAAAAAAACGGACACCGAAACTGTCCGAGACGCGACACCAACCGGCTTTTCTCTCTCCCCTTCCACCGCCACCGCCAACCCCTTCTAGAATCTTCTGGAATCCAGTCGGTGGCGGAGGGCGGAGGCTTCTGGAAGGCAGCGCGGGGATCTCGGCGGCGCCGGAGGCGTCCATGGCGAGGCCGTGAAGCCCTCGCTCGCCCGGAGGCCACGCGACGCGCGGGTTAGGAGGAGGAGGAGGGATCCGGGTGGGTGGGGTGGGGGGGACGAGATCCCGCGAGATGCAGATCCGAGAGGGGGGCCCGCGGCGCGGGGCGGCGTCGGCGGCGAGGTCGCCGA TGTCCGCCATGATGCTCGCCATGTTCGCCACCATGGCCTCCTTCTACGTCGCCGGCCGTCTGTGGCAGGATGCGCAGAGTAGGGTTTACCTGATTAAAGAGCTCGACAGGCGAACCGGCCAGGGCCATTCGACGATATCGGTGGATGATACCTTGAAGGTTGTCGCATGCAGGCAGCAAGGAAAGAGGCTGGCCTCACTTGAGATGGAGCTGGCTGCAGCAAAGCATGAAGGTTTCGTGGGGAAATATACCTATGAGACAAATGGAACTAACTCTAGAAAGAGGCCACTGGTTGTTATTGGAATAATGACAAGCTTTGGGAGGAAAAACTACCGTGATGCTGTCAGGAAGTCATGGCTTCCGACAGGTTCAATGCTGAAGAAACTAGAAGAAGAAAAAGGCATTGTAGTGCGCTTCATAGTTGGAAGAAGTGT GAACCGAGGAGATGCTTCAGACAGGGAGATTGATGAAGAAAATAGAAGTACAAAAGATTTCATGATCTTGGATGATCATACAGAGTCTGAAGAGGAGAGTCCTAAAAAGACAAAAAGTTTCTTTGCTAATGCTGCAGAGTCATTTGATGCTGAATTCTATGCTAAGGTCAATGATGATATATACATAAATGTTGACACTTTGAGTGCAATGCTCAAAGAACACTGGGACAAGCCTCGTGTCTACATTGGCTGTATGAAATCCGGCGAGGTCTTCTCTGAATCAACTCAT AAGT GGTATGAACCAGAATGGTGGAAATTT GGTGATGGGAAAACGTACTTCCGCCATGCTTCTGGTGAAATGTTTGTCATCTCAAAGGCTGTAGCTCAATTCATCTCTATAAACAGGTCT GTTC TCCGGACATATGCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAAGCATGTAAA TGAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTCAGCTCTGTGACAAGCAACACTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGAGATTATACGGAATGAAGCATACCATCTGCAGACAATGAGATCAAAACTGGCGTTTTGAAGATTTTGTTTTCTTCTGCCGTTTTCTGTGGCTCCCGTTGATCAAGCAGCACTAGTTCAAACTGAGCCATATATATCTTCTTTTTGCGAAGGAAAATCTTGTACTTTTTTTCCTGCAAGACCACACTGCTAAAATCAGGGATCCTAACTAAATTCCATCTGCAGATTGTATCTTGATTTTGCCTGTCGCTTGTAGATGTCCACCCTTACCATTCTTTTACTGATAGACACCA TTGTTGGAGTGACAAAA T CT AAT AGCAAA TCAGGAAATTATT ]
[+] EMBL AU093420 [ AGATCCCGCGAGATGCAGATCCGAGAGGGGGGCCCGCGGCGCGGGGCGGCGTCGGCGGCGAGGTCGCCGA TGTCCGCCATGATGCTCGCCATGTTCGCCACCATGGCCTCCTTCTACGTCGCCGGCCGTCTGTGGCAGGATGCGCAGAGTAGGGTTTACCTGATTAAAGAGCTCGACAGGCGAACCGGCCAGGGCCATTCGACGATATCGGTGGATGATACCTTGAAGGTTGTCGCATGCAGGCAGCAAGGAAAGAGGCTGGCCTCACTTGAGATGGAGCTGGCTGCAGCAAAGCATGAAGGTTTCGTGGGGAAATATACCTATGAGACAAATGGAACTAACTCTAGAAAGAGGCCACTGATTGTTATTGGAATAATGACAAGCTTTGGGAGGAAAAACTACCGTGATGCTG CAGGAAGTCATGGCTTCCGACAGGT ]
[+] EMBL C74877 [ GAGAGGGGGGCCCGCGGCGC GANCGGCGTCGGCGGCGANGTCG CGANTGTCCGCCATGATGCTCGCCATGTTCGCCACCATGGCCTCCTTCTACGTCGCCGGCCGTCTGTGGCAGGATGCGCAGAGTAGGGTTTACCTGATTAAAGAGCTCGACAGGCGAACCGGCCAGGGCCATTCGACGATATCGGTGGATGATACCTTGAAGGTTGTCGCATGCAGGCAGCAAGGAAAGAGGCTGGCCTCACTTGAGATGGAGCTGGCTGCAGCAAAGCATGAAGGTTTCGTGGGGAAATATACCTATGAGACAAATGGAACTAACTCTAGAAAGAGGCCACTGATTGTTATTGGAATAATGACAAGCTTTNGGAGG AAAACTACCGTGATGCTGTCAGGAAGTCATGGCTTCCGACAGGTTCAATGCTGAAG AACTAGAAGAGGAAAgg ]
[+] EMBL OSA506738 [ ATGATGCTCGCCATGTTCGCCACCATGGCCTCCTTCTACGTCGCCGGCCGTCTGTGGCAGGATGCGCAGAGTAGGGTTTACCTGATTAAAGAGCTCGACAGGCGAACCGGCCAGGGCCATTCGACGATATCGGTGGATGATACCTTGAAGGTTGTCGCATGCAGGCAGCAAGGAAAGAGGCTGGCCTCACTTGAGATGGAGCTGGCTGCAGCAAAGCATGAAGGTTTCGTGGGGAAATATACCTATGAGACAAATGGAACTAACTCTAGAAAGAGGCCACTGATTGTTATTGGAATAATGACAAGCTTTGGGAGGAAAAACTACCGTGATGCTGTCAGGAAGTCATGGCTTCCGACAGGTTCAATGCTGAAGAAACTAGAAGAAGAAAAAGGCATTGTAGTGCGCTTCATAGTTGGAAGAAGTGT GAACCGAGGAGATGCTTCAGACAGGGAGATTGATGAAGAAAATAGAAGTACAAAAGATTTCATGATCTTGGATGATCATACAGAGTCTGAAGAGGAGAGTCCTAAAAAGACAAAAAGTTTCTTTGCTAATGCTGCAGAGTCATTTGATGCTGAATTCTATGCTAAGGTCAATGATGATATATACATAAATGTTGACACTTTGAGTGCAATGCTCAAAGAACACTGGGACAAGCCTCGTGTCTACATTGGCTGTATGAAATCCGGCGAGGTCTTCTCTGAATCAACTCAT AAGT GGTATGAACCAGAATGGTGGAAATTT GGTGATGGGAAAACGTACTTCCGCCATGCTTCTGGTGAAATGTTTGTCATCTCAAAGGCTGTAGCTCAATTCATCTCTATAAACAGGTCT GTTC TCCGGACATATGCACATGATGATGTTAGTGTAGGACCATGGTTAATTGGTCTTGCTGTGAAGCATGTAAA TGAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGtaattatgc ]
[+] EMBL C26847 [ AAGGTTGTCGCATGCAGGCAGCAAGGAAAGAGGCTGGCCTCACTTGAGATGGAGCTGGCTGCAGCAAAGCATGAAGGTTTCGTGGGGAAATATACCTATGAGACAAATGGAACTAACTCTAGAAAGAGGCCACTGATTGTTATTGGAATAATGACAAGCTTTGGGAGGAAAAACTACCGTGATGCTGTCAGGAAGTCATGGCTTCCGACAGGTTCAATGCTGAAGAAACTAGAAGAAGAAAAAGGCATTGTAGTGCGCTTCATAGTTGGAAGAAGTNTNGACCCGAGGAGATGCTTCAGn ]
[-] EMBL CB670946 [ AAAATAGAAGTACAAAAGATTTCATGATCTTGGATGATCATACAGAGTCTGAAGAGGAGAGTCCTAAAAAGACAAAAAGTTTCTTTGCTAATGCTGCAGAGTCATTTGATGCTGAATTCTATGCTAAGGTCAATGATGATATATACATAAATGTTGACACTTTGAGTGCAATGCTCAAAGAACACTGGGACAAGCCTCGTGTCTACATTGGCTGTATGAAATCCGGCGAGGTCTTCTCTGAATCAACTCAT AAGT GGTATGAACCAGAATGGTGGAAATTT GGTGATGGGAAAACGTACTTCCGCCATGCTTCTGGTGAAATGTTTGTCATCTCAAAGGCTGTAGCTCAATTCATCTCTATAAACAGGTCT GTTC TCCGGACATATGCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAAGCATGTAAA TGAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTCAGCTCTGTGACAAGCAACACTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGAGATTATACGGAATGAAGCATACCATCTGCAGACAATGAGATCAAAACTGGCGTTTTGAAGATTTTGTTTTCTTCTGCCGTTTTCTGTGGCTCCCGTTGATCAAGCAGCACTAGTTCAAACTGAGCCATATATATCTTCTTTTTGCGAAGGAAAATCTTGTACTTTTTTTCCTGCAAGACCACACTGCTAAAATCAGGGATCCTAACTAAATTCCATCTGCAGATTGTATCTTGATTTTGCCTGTCGCTTGTAGATGTCCACCCTTACCATTCTTTTACTGATAGACACCA TTGT ]
[+] EMBL AU093421 [ actTCATAAAGTGGGTATGAACCAGAATGG GGAAATTTGGGTNATGGGAAAACGGACTTCCGCCATGCTTCTGGNGAAATGTTTGTCATCTCAAAGGCTG AGCTCAATTCATCTCTATAAACAGGTCT GTTC TCCGGACATATGCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAAGCATGTAAA TGAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTCAGCTCTGTGACAAGCAACACTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGAGATTATACGGAATGAAGCATACCATNTGCAGACAATGAGATCAAAACTGGCGTTTTGAAGATTTTGTTTTCTTCTGCCGTTTTCTGTGGCTCCCGTTGATCAAGCAGCACTAGTTCAAACTGAGCCATATATATCTTCTTTTTGCGAAGGAAAATCTTGTACTTTTTTTCCTGCAAGACCACACTGCTAAAATCAGGGATCCTAACTAAATTCCATCTGCAGATTGTATCTTGATTTTGCCTGTCGCTTGTANATGTCCACCCTTACCATTCTTTTACTGATAGACACCA TTGTTGGAGTGACAAAA T CT AAT AGCAAA TCAGGAAATTATTTTACTCCATCAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI796947 [ gAACAGGTCTGGTTCGTCCGGACATATGCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAAGCATGTAAACTGAA C AAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTCAGCTCTGTGACAAGC ACACTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGAGATTATACGGAATGAAGCATACCATCTCCAGAC ATGAGATC AAACTGGCGTTTTGAAGATTTTGTTTTCTTCTGCCGTTTTCTGTGGCTCCCGTTGATCAAGCAGCACTAGTTCAAACTGAGCCATATATATCTTCTTTTTGCGAAGGAAAATCTTGTACTTTTTTTCCTGCAAGACCACACTGCTAAAATCAGGGATCCTAACTAAATTCCATCTGCAGATTGTATCTTGATTTT CCTGTCGCTTGTAGATGTCCACCCTTACCATTCTTTTACTGATAGACACCATTTGTTGGAGTGACAAAAATTTCCTAAATAACCAAACTCCGGAAATTATTTTACTCCATCAAAAAAAAAA ]
[+] EMBL AU166758 [ CCTCAGGAGCTTTGTGTTAAGCTTTGTGANAAGCAACACTTTNGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGAGATTATACGGAATGAAGCATACCATCTGCAGACAATGAGATCAAAACTGGCGTTTTGAAGATTTTGTTTTCTTCTGCCGTTTTCTGTGGCTCCCGTTGATCAAGCAGCACTAGTTCAAACTGAGCCATATATATCTTCTTTTTGCGAAGGAAAATCTTGTACTTTTTTTCCTGCAAGACCACACTGCTAAAATCAGGGATCCTAACTAAATTCCATCTGCAGATTGTATCTTGATTTTGCCTGTCGCTTGTAGATGTCCACCCTTACCATTCTTTTACTGATAGACACCA TTGTTGGAGTGACAAAA T CT AAT AGCAAA TCAGGAAATTATTTTACTCCATCAGATTAAAAAAAAAAAAA ]
consensusID : consensus_13442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 754 fasta sequence
[AGTTTCTTTGCTAATGCTGCAGAGTCATTTGATGCTGAATTCTATGCTAAGGTCAATGATGATATATACATAAATGTTGACACTTTGAGTGCAATGCTCAAAGAACACTGGGACAAGCCTCGTGTCTACATTGGCTGTATGAAATCCGGCGAGGTCTTCTCTGAATCAACTCATAAGTGGTATGAACCAGAATGGTGGAAATTTGGTGATGGGAAAACGTACTTCCGCCATGCTTCTGGTGAAATGTTTGTCATCTCAAAGGCTGTAGCTCAATTCATCTCTATAAACAGGTCTGTTCTCCGGACATATGCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAAGCATGTAAATGAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTCAGCTCTGTGACAAGCAACACTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGAGATTATACGGAATGAAGCATCCCATCTGCAGACAATGTCCCCCCCACCCCACCCACCCGGATCCCTCCTCCTCCTCCTAACCCGCGCGTCGCGTGGCCTCCGGGCGAGCGAGGGCTTCACGGCCTCGCCATGGACGCCTCCGGCGCCGCCGAGATCCCCGCGCTGCCTTCCAGAAGCCTCCGCCCTCCGCCACCGACTGGATTCCAGAAGATTCTAGAAGGGGTTGGCGGTGGCGGTGGAAGGGGAGAGAGAAAAGCCGGTTGGTGTAGCGTCTCGG]
[-] EMBL CB670945 [AGTTTCTTTGCTAATGCTGCAGAGTCATTTGATGCTGAATTCTATGCTAAGGTCAATGATGATATATACATAAATGTTGACACTTTGAGTGCAATGCTCAAAGAACACTGGGACAAGCCTCGTGTCTACATTGGCTGTATGAAATCCGGCGAGGTCTTCTCTGAATCAACTCATAAGTGGTATGAACCAGAATGGTGGAAATTTGGTGATGGGAAAACGTACTTCCGCCATGCTTCTGGTGAAATGTTTGTCATCTCAAAGGCTGTAGCTCAATTCATCTCTATAAACAGGTCTGTTCTCCGGACATATGCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAAGCATGTAAATGAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTCAGCTCTGTGACAAGCAACACTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGAGATTATACGGAATGAAGCATCCCATCTGCAGACAATGTCCCCCCCACCCCACCCACCCGGATCCCTCCTCCTCCTCCTAACCCGCGCGTCGCGTGGCCTCCGGGCGAGCGAGGGCTTCACGGCCTCGCCATGGACGCCTCCGGCGCCGCCGAGATCCCCGCGCTGCCTTCCAGAAGCCTCCGCCCTCCGCCACCGACTGGATTCCAGAAGATTCTAGAAGGGGTTGGCGGTGGCGGTGGAAGGGGAGAGAGAAAAGCCGGTTGGTGTAGCGTCTCGG]
[+] EMBL CA999112 [ CTAAGGTCAATGATGATATATACATAAATGTTGACACTTTGAGTGCAATGCTCAAAGAACACTGGGACAAGCCTCGTGTCTACATTGGCTGTATGAAATCTGGCGAGGTCTTCTCTGAATCAACTCATAAGTGGTATGAACCAGAATGGTGGAAATTTGGTGATGGGAAAACGTACTTCCGCCATGCTTCTGGTGAAATGTTTGTCATCTCAAAGGCTGTAGCTCAATTCATCTCTATAAACAGGTCTGTTCTCCGGACATATGCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAA ]
consensusID : consensus_13442#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[GTGGTTTTACCCAGGATGGGGGAAATTTGGGGATGGGAAAAGGGACTTCCGCCGTGTTTTTGGTGAAAGGTTGGTTATTTCAAGAGGGCTGTGCCTCAATTTTTCTCTATAAACAGGTGTTTTTCCGGGCATATGCCCCTGATGATGTTAGGGTAGGATCATGGTTAATGGGTCTTCCTGTGAAGCACGTTAATGAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTTAGCTTTGTGCCAAGCAACCCTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGGGATTATACGGAATGAAGCATCCCATTTGCAGACAATGAGATCAAAACTGGCGTTTTGAAGATTTTGTTTTTTTTTGCCGTTTTCTGTGGCTCCCGTTGATCAACCAGCCCTAGTTCAAATTGAGCCATATATTTTTTTTTTTTGCGAAGGAAAATTTTGTACTTTTTTTCCTGCAAGACCCCCCTGCTAAAATCAGGGATCCTAACTAAATTCCATTTGCAGATTGTTTTTTGATTTTGCCTGTCGCTAGTAGATGTCCCCCCTTACCATTTTTTTATTGATAGACCCCATTGTTGGAGTGCCAAAATTTAATAGCAAATCAGGAAATTTTTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA763684 [GTGGTTTTACCCAGGATGGGGGAAATTTGGGGATGGGAAAAGGGACTTCCGCCGTGTTTTTGGTGAAAGGTTGGTTATTTCAAGAGGGCTGTGCCTCAATTTTTCTCTATAAACAGGTGTTTTTCCGGGCATATGCCCCTGATGATGTTAGGGTAGGATCATGGTTAATGGGTCTTCCTGTGAAGCACGTTAATGAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTTAGCTTTGTGCCAAGCAACCCTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGGGATTATACGGAATGAAGCATCCCATTTGCAGACAATGAGATCAAAACTGGCGTTTTGAAGATTTTGTTTTTTTTTGCCGTTTTCTGTGGCTCCCGTTGATCAACCAGCCCTAGTTCAAATTGAGCCATATATTTTTTTTTTTTGCGAAGGAAAATTTTGTACTTTTTTTCCTGCAAGACCCCCCTGCTAAAATCAGGGATCCTAACTAAATTCCATTTGCAGATTGTTTTTTGATTTTGCCTGTCGCTAGTAGATGTCCCCCCTTACCATTTTTTTATTGATAGACCCCATTGTTGGAGTGCCAAAATTTAATAGCAAATCAGGAAATTTTTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13442#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence
[ATCCCATTATAAGGGGCAGAAAGTACAATGCATGGGGCATGGGTTTTTGTAGCTGTCTATTTATAATATTAATCACTAGAATGTTCGGCACTCTAGTTCATAATCTGGACTCATAGGTGGCTGAATGAACATGGGGAATAAAATGTATTTCTGTTGCTGCATAATAAAGTGGCACCTTTTTTTTTGTTGACGGTTATCAGTTGATGTAAATAAAAATGAGTTGGCTTCATTTCATTGTTTTCCCGTCTTACTGTTGCATTAAAATGATGTCTGTTTTTTGGGTGATTTTAATTTTCTTCTCTGTACAGGTTCAATGCTGAAGAAACTAGAAGAAGAAAAAGGCATTGTAGTGCGCTTCATAGTTGGAAGAAGGTACCACAGGACTCCTTGCTAATAGAATGACTATATGAGGTCTAGATATCTGATAGTTCCTTATCCATGTAGTGTGAACCGAGGAGATGCTTCAGACAGGGAGATTGATGAAGAAAATAGAAGTACAAAAGATTTCATGATCTTGGTAAGCCTGATTGATCAATCAAACATGTGGTAGTACATATTTACAACATTGAATGTGTATATAAATATTTTTCATCATAATTGTTCACCTTATTCATGTTGATTACATGTTGCTTGAAAACCAGATAAACGATGTGTGTGCATA]
[+] EMBL CA764649 [ATCCCATTATAAGGGGCAGAAAGTACAATGCATGGGGCATGGGTTTTTGTAGCTGTCTATTTATAATATTAATCACTAGAATGTTCGGCACTCTAGTTCATAATCTGGACTCATAGGTGGCTGAATGAACATGGGGAATAAAATGTATTTCTGTTGCTGCATAATAAAGTGGCACCTTTTTTTTTGTTGACGGTTATCAGTTGATGTAAATAAAAATGAGTTGGCTTCATTTCATTGTTTTCCCGTCTTACTGTTGCATTAAAATGATGTCTGTTTTTTGGGTGATTTTAATTTTCTTCTCTGTACAGGTTCAATGCTGAAGAAACTAGAAGAAGAAAAAGGCATTGTAGTGCGCTTCATAGTTGGAAGAAGGTACCACAGGACTCCTTGCTAATAGAATGACTATATGAGGTCTAGATATCTGATAGTTCCTTATCCATGTAGTGTGAACCGAGGAGATGCTTCAGACAGGGAGATTGATGAAGAAAATAGAAGTACAAAAGATTTCATGATCTTGGTAAGCCTGATTGATCAATCAAACATGTGGTAGTACATATTTACAACATTGAATGTGTATATAAATATTTTTCATCATAATTGTTCACCTTATTCATGTTGATTACATGTTGCTTGAAAACCAGATAAACGATGTGTGTGCATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13442#0 TCTCTCTCTCTCCAAAATTCCAAGGCGCTGCAGCAGCAGACAGAGGTTTGAGAGAGAGAG 60
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 AAGAAAAAAAAAACGGACACCGAAACTGTCCGAGACGCGACACCAACCGGCTTTTCTCTC 120
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 TCCCCTTCCACCGCCACCGCCAACCCCTTCTAGAATCTTCTGGAATCCAGTCGGTGGCGG 180
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 AGGGCGGAGGCTTCTGGAAGGCAGCGCGGGGATCTCGGCGGCGCCGGAGGCGTCCATGGC 240
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 GAGGCCGTGAAGCCCTCGCTCGCCCGGAGGCCACGCGACGCGCGGGTTAGGAGGAGGAGG 300
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 AGGGATCCGGGTGGGTGGGGTGGGGGGGACGAGATCCCGCGAGATGCAGATCCGAGAGGG 360
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 GGGCCCGCGGCGCGGGGCGGCGTCGGCGGCGAGGTCGCCGATGTCCGCCATGATGCTCGC 420
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 CATGTTCGCCACCATGGCCTCCTTCTACGTCGCCGGCCGTCTGTGGCAGGATGCGCAGAG 480
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 TAGGGTTTACCTGATTAAAGAGCTCGACAGGCGAACCGGCCAGGGCCATTCGACGATATC 540
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 GGTGGATGATACCTTGAAGGTTGTCGCATGCAGGCAGCAAGGAAAGAGGCTGGCCTCACT 600
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 TGAGATGGAGCTGGCTGCAGCAAAGCATGAAGGTTTCGTGGGGAAATATACCTATGAGAC 660
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 AAATGGAACTAACTCTAGAAAGAGGCCACTGATTGTTATTGGAATAATGACAAGCTTTGG 720
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 GAGGAAAAACTACCGTGATGCTGTCAGGAAGTCATGGCTTCCGACAGGTTCAATGCTGAA 780
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 GAAACTAGAAGAAGAAAAAGGCATTGTAGTGCGCTTCATAGTTGGAAGAAGTGTGAACCG 840
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 AGGAGATGCTTCAGACAGGGAGATTGATGAAGAAAATAGAAGTACAAAAGATTTCATGAT 900
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 CTTGGATGATCATACAGAGTCTGAAGAGGAGAGTCCTAAAAAGACAAAAAGTTTCTTTGC 960
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 -------------------------------------------------AGTTTCTTTGC 11
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 TAATGCTGCAGAGTCATTTGATGCTGAATTCTATGCTAAGGTCAATGATGATATATACAT 1020
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 TAATGCTGCAGAGTCATTTGATGCTGAATTCTATGCTAAGGTCAATGATGATATATACAT 71
consensus_13442#3 ------------------------------------------------------------
consensus_13442#0 AAATGTTGACACTTTGAGTGCAATGCTCAAAGAACACTGGGACAAGCCTCGTGTCTACAT 1080
consensus_13442#2 ------------------------------------------------------------
consensus_13442#1 AAATGTTGACACTTTGAGTGCAATGCTCAAAGAACACTGGGACAAGCCTCGTGTCTACAT 131
consensus_13442#3 --ATCCCATTATAAGGGGCAGAAAGTACAATGCATGGGGCATGGGTTTTTGTAGCTGTCT 58
consensus_13442#0 TGGCTGTATGAAATCCGGCGAGGTCTTCTCTGAATCAACTCATAAGTGGTATGAACCAGA 1140
consensus_13442#2 ---------------------------------------------GTGGTTTTACCCAGG 15
consensus_13442#1 TGGCTGTATGAAATCCGGCGAGGTCTTCTCTGAATCAACTCATAAGTGGTATGAACCAGA 191
consensus_13442#3 ATTTATAATATTAATCACTAGAATGTTCGGCACTCTAGTTCATAA----TCTGGACTCAT 114
* * *
consensus_13442#0 ATGGTGGAAATTTGGTGATGGGAAAACGTACTTCCGCCATGCTTCTGGTGAAATGTTTGT 1200
consensus_13442#2 ATGGGGGAAATTTGGGGATGGGAAAAGGGACTTCCGCCGTGTTTTTGGTGAAAGGTTGGT 75
consensus_13442#1 ATGGTGGAAATTTGGTGATGGGAAAACGTACTTCCGCCATGCTTCTGGTGAAATGTTTGT 251
consensus_13442#3 A-GGTGGCTGAATGAACATGGGGAATAAAA-------TGTATTTCTGTTG------CTG- 159
* ** ** ** ***** ** * * ** ** ** *
consensus_13442#0 CATCTCAAA--GGCTGTAGCTCAATTCATCTCTATAAACAGGTCTGTTCTCCGGACATAT 1258
consensus_13442#2 TATTTCAAGAGGGCTGTGCCTCAATTTTTCTCTATAAACAGGTGT-TTTTCCGGGCATAT 134
consensus_13442#1 CATCTCAAA--GGCTGTAGCTCAATTCATCTCTATAAACAGGTCTGTTCTCCGGACATAT 309
consensus_13442#3 CATAATAAA------GTGGCACC-TTTTTTTTTGTTGACGG-----TTATCAGTTGATGT 207
** ** ** * * ** * * * * ** * ** ** * ** *
consensus_13442#0 GCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAAGCATGTAAAT 1318
consensus_13442#2 GCCCCTGATGATGTTAGGGTAGGATCATGGTTAATGGGTCTTCCTGTGAAGCACGTTAAT 194
consensus_13442#1 GCACATGATGATGTTAGTGTAGGATCATGGTTAATTGGTCTTGCTGTGAAGCATGTAAAT 369
consensus_13442#3 AAATAAAAATGAGTTGGCTTCATTTCATTGTTTTCCCGTCTTACTGTT--GCATTAAAAT 265
* *** * * **** *** ***** **** *** ***
consensus_13442#0 GAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTCAGCTCTGTGACAA 1378
consensus_13442#2 GAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTTAGCTTTGTGCCAA 254
consensus_13442#1 GAAGCAAAACTATGTTGTTCATCCTGGCCCTCAGGAGCTTTGTGTTCAGCTCTGTGACAA 429
consensus_13442#3 GATGTCTGTTT-TTTGGGTGATTTTAATTTTC-----TTCTCTGTACAGGTTCAATGCTG 319
** * * * * * * ** * ** * * *** ** * *
consensus_13442#0 GCAACACTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGAGATTATACGGAA 1438
consensus_13442#2 GCAACCCTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGGGATTATACGGAA 314
consensus_13442#1 GCAACACTTTCGAGGGGAAGAATTTTGTGAAAATTATGTTAGGATCGAGATTATACGGAA 489
consensus_13442#3 AAGAAACT----AGAAGAAGAA----AAAGGCATTGTAGTGCGCTTCATAGTTGGAAGAA 371
* ** ** ****** *** * * * * * * ***
consensus_13442#0 TGAAGCATACCATCTGCAGACAATGAGATCAAAACTGGCGTTTTGAAGATTTTGTTTTCT 1498
consensus_13442#2 TGAAGCATCCCATTTGCAGACAATGAGATCAAAACTGGCGTTTTGAAGATTTTGTTTTTT 374
consensus_13442#1 TGAAGCATCCCATCTGCAGACAATGTCCCCCCCACCCCACCCACCCGGATCCCTCCTCCT 549
consensus_13442#3 GGTACCACAGGACTCCTTGCTAATAGAATGACTATATGAGGTCTAGATATCTGATAGTTC 431
* * ** * * *** * **
consensus_13442#0 TCTGCCGTTTTCTGTGGCTCCCGTTGATCAAGCAGCACTAGTTCAAACTGAGCCAT-ATA 1557
consensus_13442#2 TTTGCCGTTTTCTGTGGCTCCCGTTGATCAACCAGCCCTAGTTCAAATTGAGCCAT-ATA 433
consensus_13442#1 CCTCCTAACCCGCGCGTCGCGTGGCCTCCGGGCGAGCGAGGGCTTCACGGCCTCGCCATG 609
consensus_13442#3 CTTA----TCCATGTAG----TGTGAACCGAGGAGA--TGCTTCAGACAGGGAGATTGAT 481
* * * * * *
consensus_13442#0 TATCTTCTTTTTGCGAAGGAAAATCTTGTACTTTTTTTCCTGCAAGACCACACTGCTAAA 1617
consensus_13442#2 TTTTTTTTTTTTGCGAAGGAAAATTTTGTACTTTTTTTCCTGCAAGACCCCCCTGCTAAA 493
consensus_13442#1 GACGCCTCCGGCGCCGCCGAGATCCCCGCGCTGCCTTCC-----AGAAGCCTCCGCC--- 661
consensus_13442#3 GAAGAAAATAGAAGTACAAAAGATTTCATGATCTTGGTAA-GCCTGATTGATCAATCAAA 540
* * ** *
consensus_13442#0 ATCAGGGATCCTAACTAAATTCCATCTGCAGATTGTATCTTGATTTTGCCTGTCGCTTGT 1677
consensus_13442#2 ATCAGGGATCCTAACTAAATTCCATTTGCAGATTGTTTTTTGATTTTGCCTGTCGCTAGT 553
consensus_13442#1 --CTCCGCCACCGACTGGATTCCA---GAAGATTCTAGAAGGGGTTGGC--GGTGGCGGT 714
consensus_13442#3 -CATGTGGTAGTACATATTTACAACATTGAATGTGTATATAAATATTTT----TCATCAT 595
* * * * * * * * * *
consensus_13442#0 AGATGTCCACCCTTACCATTCTTTTACTGATAGACACCATTGTTGGAGTGACAAAATCTA 1737
consensus_13442#2 AGATGTCCCCCCTTACCATTTTTTTATTGATAGACCCCATTGTTGGAGTGCCAAAATTTA 613
consensus_13442#1 GGAAGGGGAGAGAGAAAAGCCGGTTGGTGTAGCGTCTCGG-------------------- 754
consensus_13442#3 AATTGTTCACCTTATTCATGTTGATTACATGTTGCTTGAAAACCAGATAAACGATGTGTG 655
* * *
consensus_13442#0 ATAGCAAATCAGGAAATTATTTTACTCCATCAAAAAAAAAAAAAAAAAAAAA-------- 1789
consensus_13442#2 ATAGCAAATCAGGAAATTTTTTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 673
consensus_13442#1 ------------------------------------------------------------
consensus_13442#3 TGCATA------------------------------------------------------ 661
consensus_13442#0 ----
consensus_13442#2 AAAA 677
consensus_13442#1 ----
consensus_13442#3 ----
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||